Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016610 Carpinus fangiana HOM05D006980 ORTHO05D008704 4.2e-127 459.1 337 100.0
CiPaw.09G014400 Carya illinoinensis HOM05D006980 ORTHO05D008704 7.4e-84 315.5 227 69.2
QL07p038724 Quercus lobata HOM05D006980 ORTHO05D008704 7.9e-78 295.4 223 72.6
Prupe.7G109800 Prunus persica HOM05D006980 ORTHO05D008704 1.4e-77 294.7 335 72.8
QL07p038975 Quercus lobata HOM05D006980 ORTHO05D008704 1.1e-71 275.0 223 69.1
CANSAT64G1568 Cannabis sativa HOM05D006980 ORTHO05D008704 1.9e-71 274.2 219 63.0
RcHm_v2.0_Chr3g0473791 Rosa chinensis HOM05D006980 ORTHO05D008704 3.2e-71 273.5 224 59.8
Manes.09G055100 Manihot esculenta HOM05D006980 ORTHO05D008704 1.5e-68 264.6 173 68.2
FAN05G0999 Fragaria x ananassa HOM05D006980 ORTHO05D008704 2.0e-68 264.2 225 58.2
Dinv21206 Davidia involucrata HOM05D006980 ORTHO05D008704 7.0e-66 255.8 221 57.9
Lj1g0023344 Lotus japonicus HOM05D006980 ORTHO05D008704 2.9e-64 250.4 221 57.5
Potri.006G068700 Populus trichocarpa HOM05D006980 ORTHO05D008704 2.9e-64 250.4 175 65.7
PGR142G3286 Punica granatum HOM05D006980 ORTHO05D008704 5.0e-64 249.6 229 59.8
CsaV3_6G007180 Cucumis sativus L. HOM05D006980 ORTHO05D008704 1.5e-63 248.1 219 59.8
arahy.Tifrunner.gnm1.ann1.IK7M5W Arachis hypogaea HOM05D006980 ORTHO05D008704 3.2e-63 246.9 226 60.6
EL10Ac6g13708 Beta vulgaris HOM05D006980 ORTHO05D008704 3.2e-63 246.9 177 65.5
Eucgr.G00971 Eucalyptus grandis HOM05D006980 ORTHO05D008704 4.2e-63 246.5 214 58.9
arahy.Tifrunner.gnm1.ann1.3P0NFT Arachis hypogaea HOM05D006980 ORTHO05D008704 9.4e-63 245.4 224 60.7
Actinidia05428 Actinidia chinensis HOM05D006980 ORTHO05D008704 1.8e-61 241.1 209 59.3
Sc02g0000270 Simmondsia chinensis HOM05D006980 ORTHO05D008704 1.8e-61 241.1 211 57.3
Ah.02g130100 Amaranthus hybridus HOM05D006980 ORTHO05D008704 2.3e-61 240.7 222 57.2
PSO541G2622 Papaver somniferum HOM05D006980 ORTHO05D008704 2.3e-61 240.7 222 55.9
TAR633G1277 Trochodendron aralioides HOM05D006980 ORTHO05D008704 6.8e-61 239.2 222 56.8
Rhsim03G0075000 Rhododendron simsii HOM05D006980 ORTHO05D008704 8.8e-61 238.8 235 59.6
CSS0041599 Camellia sinensis var. sinensis HOM05D006980 ORTHO05D008704 1.2e-60 238.4 237 56.5
Sed0006527 Sechium edule HOM05D006980 ORTHO05D008704 2.6e-60 237.3 216 56.9
MELO3C022409.2 Cucumis melo HOM05D006980 ORTHO05D008704 7.5e-60 235.7 219 57.5
PSO675G7214 Papaver somniferum HOM05D006980 ORTHO05D008704 1.4e-58 231.5 221 53.4
SHI12421 Sapria himalayana HOM05D006980 ORTHO05D008704 1.8e-58 231.1 174 60.9
TWI77G0642 Tripterygium wilfordii HOM05D006980 ORTHO05D008704 1.8e-58 231.1 216 53.7
Atru.chr8.1533 Acer truncatum HOM05D006980 ORTHO05D008704 2.4e-58 230.7 326 70.2
Medtr7g104640 Medicago truncatula HOM05D006980 ORTHO05D008704 4.1e-58 229.9 173 58.4
AUR62014076 Chenopodium quinoa HOM05D006980 ORTHO05D008704 7.0e-58 229.2 220 54.5
AUR62005415 Chenopodium quinoa HOM05D006980 ORTHO05D008704 3.5e-57 226.9 220 54.1
Aqoxy2G01180 Aquilegia oxysepala HOM05D006980 ORTHO05D008704 4.5e-57 226.5 222 54.1
Cc02_g28460 Coffea canephora HOM05D006980 ORTHO05D008704 5.9e-57 226.1 209 53.1
CAN.G2030.1 Capsicum annuum HOM05D006980 ORTHO05D008704 7.7e-57 225.7 172 59.3
ClCG06G001250 Citrullus lanatus HOM05D006980 ORTHO05D008704 1.0e-56 225.3 142 73.2
TPR.G19555 Trifolium pratense HOM05D006980 ORTHO05D008704 1.0e-56 225.3 219 55.3
CAN.G137.42 Capsicum annuum HOM05D006980 ORTHO05D008704 1.7e-56 224.6 163 61.3
COL.COLO4_29731 Corchorus olitorius HOM05D006980 ORTHO05D008704 3.8e-56 223.4 228 53.9
Peaxi162Scf00045g00156 Petunia axillaris HOM05D006980 ORTHO05D008704 3.8e-56 223.4 172 57.6
Thecc.05G089500 Theobroma cacao HOM05D006980 ORTHO05D008704 3.8e-56 223.4 227 53.3
Lalb_Chr20g0111701 Lupinus albus HOM05D006980 ORTHO05D008704 8.5e-56 222.2 202 57.9
Cpa.g.sc166.4 Carica papaya HOM05D006980 ORTHO05D008704 1.9e-55 221.1 173 57.2
Lsat_1_v5_gn_5_164841 Lactuca sativa HOM05D006980 ORTHO05D008704 1.9e-55 221.1 335 64.8
Nitab4.5_0000025g0100 Nicotiana tabacum HOM05D006980 ORTHO05D008704 7.2e-55 219.2 172 58.1
Nitab4.5_0003259g0020 Nicotiana tabacum HOM05D006980 ORTHO05D008704 1.6e-54 218.0 172 57.6
PGSC0003DMG401009543 Solanum tuberosum HOM05D006980 ORTHO05D008704 1.6e-54 218.0 172 57.0
Sopen08g002140 Solanum pennellii HOM05D006980 ORTHO05D008704 2.1e-54 217.6 285 61.8
Ciclev10011570m.g Citrus clementina HOM05D006980 ORTHO05D008704 2.7e-54 217.2 228 52.2
Solyc08g006170.1 Solanum lycopersicum HOM05D006980 ORTHO05D008704 2.7e-54 217.2 172 57.0
Haze_19614 Corylus avellana HOM05D006980 ORTHO05D008704 6.1e-54 216.1 108 96.3
Lj2P137T25 Lonicera japonica HOM05D006980 ORTHO05D008704 1.4e-53 214.9 148 64.2
Oeu056884.1 Olea europaea HOM05D006980 ORTHO05D008704 1.4e-53 214.9 175 58.3
THA.LOC104804920 Tarenaya hassleriana HOM05D006980 ORTHO05D008704 6.8e-53 212.6 216 50.9
MSTRG.19261 Avicennia marina HOM05D006980 ORTHO05D008704 7.5e-52 209.1 224 50.4
ECA248G2176 Erigeron canadensis HOM05D006980 ORTHO05D008704 7.5e-52 209.1 224 50.4
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 6.3e-51 206.1 172 56.4
SalBow3G1904 Salvia bowleyana HOM05D006980 ORTHO05D008704 8.3e-51 205.7 226 47.3
CARHR130480 Cardamine hirsuta HOM05D006980 ORTHO05D008704 1.4e-50 204.9 209 49.8
SGA_v2.0_scaffold13G06715 Striga asiatica HOM05D006980 ORTHO05D008704 7.0e-50 202.6 222 50.0
ATR0051G062 Amborella trichopoda HOM05D006980 ORTHO05D008704 1.2e-49 201.8 166 52.4
AL4G32340 Arabidopsis lyrata HOM05D006980 ORTHO05D008704 1.6e-49 201.4 207 48.8
HanXRQChr02g0032651 Helianthus annuus HOM05D006980 ORTHO05D008704 1.6e-49 201.4 177 53.7
Nn6g34894 Nelumbo nucifera HOM05D006980 ORTHO05D008704 1.6e-49 201.4 191 56.0
GSVIVG01029738001 Vitis vinifera HOM05D006980 ORTHO05D008704 3.5e-49 200.3 215 52.6
Migut.J01034 Erythranthe guttata HOM05D006980 ORTHO05D008704 5.9e-49 199.5 210 49.5
BcaB02g09370 Brassica carinata HOM05D006980 ORTHO05D008704 1.0e-48 198.7 218 48.6
AT2G36240 Arabidopsis thaliana HOM05D006980 ORTHO05D008704 5.0e-48 196.4 207 48.3
Sp4g18460 Schrenkiella parvula HOM05D006980 ORTHO05D008704 1.5e-47 194.9 216 46.3
Aa31LG5G21360 Aethionema arabicum HOM05D006980 ORTHO05D008704 1.9e-47 194.5 214 47.2
BcaC02g11732 Brassica carinata HOM05D006980 ORTHO05D008704 7.2e-47 192.6 221 46.2
BolC4t22838H Brassica oleracea HOM05D006980 ORTHO05D008704 7.2e-47 192.6 221 46.2
Glyma.03G196000 Glycine max HOM05D006980 ORTHO05D008704 9.5e-47 192.2 175 52.6
Duzib106G0372 Durio zibethinus HOM05D006980 ORTHO05D008704 2.8e-46 190.7 227 48.5
BcaC02g11726 Brassica carinata HOM05D006980 ORTHO05D008704 3.6e-46 190.3 215 46.0
BcaC02g11728 Brassica carinata HOM05D006980 ORTHO05D008704 3.6e-46 190.3 215 46.0
Eucgr.G00972 Eucalyptus grandis HOM05D006980 ORTHO05D008704 6.1e-46 189.5 206 51.5
Phvul.001G190300 Phaseolus vulgaris HOM05D006980 ORTHO05D008704 8.0e-46 189.1 195 48.2
Gorai.009G402600 Gossypium raimondii HOM05D006980 ORTHO05D008704 1.8e-45 188.0 227 47.6
VMungo1383G3509 Vigna mungo HOM05D006980 ORTHO05D008704 5.2e-45 186.4 195 49.2
GSVIVG01015930001 Vitis vinifera HOM05D006980 ORTHO05D008704 8.9e-45 185.7 220 50.5
BcaB02g09372 Brassica carinata HOM05D006980 ORTHO05D008704 1.5e-44 184.9 227 46.7
C04p11900 Brassica napus HOM05D006980 ORTHO05D008704 4.4e-44 183.3 219 51.6
BraA05t19913Z Brassica rapa HOM05D006980 ORTHO05D008704 9.8e-44 182.2 213 48.8
A05p09600 Brassica napus HOM05D006980 ORTHO05D008704 1.3e-43 181.8 215 48.4
Cc00_g27900 Coffea canephora HOM05D006980 ORTHO05D008704 8.3e-43 179.1 223 46.6
BcaC02g11731 Brassica carinata HOM05D006980 ORTHO05D008704 5.4e-42 176.4 229 41.9
SEGI_13947 Sequoiadendron giganteum HOM05D006980 ORTHO05D008704 1.7e-40 171.4 167 50.9
SEGI_40503 Sequoiadendron giganteum HOM05D006980 ORTHO05D008704 1.7e-40 171.4 167 50.9
HPP92_011900 Vanilla planifolia HOM05D006980 ORTHO05D008704 4.3e-39 166.8 176 47.7
arahy.Tifrunner.gnm1.ann1.FQN2WV Arachis hypogaea HOM05D006980 ORTHO05D008704 3.7e-35 153.7 103 67.0
Sabra06G0051200 Salix brachista HOM05D006980 ORTHO05D008704 3.7e-35 153.7 107 61.7
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 3.7e-35 153.7 193 44.6
FAN02G3599 Fragaria x ananassa HOM05D006980 ORTHO05D008704 4.9e-35 153.3 109 62.4
Thhalv10016603m.g Eutrema salsugineum HOM05D006980 ORTHO05D008704 6.6e-32 142.9 226 36.7
Ca_09007_v3 Cicer arietinum L. HOM05D006980 ORTHO05D008704 1.6e-30 138.3 107 55.1
Eucgr.G00976 Eucalyptus grandis HOM05D006980 ORTHO05D008704 1.3e-27 128.6 216 38.9
DCAR_013476 Daucus carota HOM05D006980 ORTHO05D008704 7.1e-26 122.9 88 59.1
Psat3g033240 Pisum sativum HOM05D006980 ORTHO05D008704 9.2e-26 122.5 107 51.4
SEGI_09666 Sequoiadendron giganteum HOM05D007402 ORTHO05D003673 1.2e-09 68.9 176 27.3
Ciclev10028524m.g Citrus clementina HOM05D007402 ORTHO05D003673 1.3e-08 65.5 129 29.5
Manes.07G071796 Manihot esculenta HOM05D006980 ORTHO05D008704 2.3e-08 64.7 45 57.8
FvH4_6g18780 Fragaria vesca HOM05D006980 ORTHO05D008704 6.6e-08 63.2 45 60.0
FAN14G4048 Fragaria x ananassa HOM05D006980 ORTHO05D008704 6.6e-08 63.2 45 60.0
Haze_07107 Corylus avellana HOM05D005764 ORTHO05D006600 1.9e-07 61.6 139 28.8
Carub.0004s1800 Capsella rubella HOM05D006980 ORTHO05D008704 4.3e-07 60.5 53 45.3
AUR62011538 Chenopodium quinoa HOM05D006819 ORTHO05D008763 1.6e-06 58.5 78 43.6
FAN05G0477 Fragaria x ananassa HOM05D006980 ORTHO05D008704 2.1e-06 58.2 45 55.6
AUR62016357 Chenopodium quinoa HOM05D006819 ORTHO05D008763 2.8e-06 57.8 78 42.3
Zm00001eb118400 Zea mays HOM05D002453 ORTHO05D002107 4.8e-06 57.0 125 32.8
MBI06_g43058_MAGBIO Magnolia biondii HOM05D007402 ORTHO05D003673 8.1e-06 56.2 200 28.0


User provided reference genes

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