Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016609 Carpinus fangiana HOM05D004140 ORTHO05D006116 2.3e-243 845.1 428 100.0
Haze_19613 Corylus avellana HOM05D004140 ORTHO05D006116 1.6e-236 822.4 427 97.7
CiPaw.09G014200 Carya illinoinensis HOM05D004140 ORTHO05D006116 2.9e-193 678.7 429 79.7
QL07p038742 Quercus lobata HOM05D004140 ORTHO05D006116 3.7e-188 661.8 434 78.6
QL07p038993 Quercus lobata HOM05D004140 ORTHO05D006116 4.8e-188 661.4 434 78.8
TWI77G1027 Tripterygium wilfordii HOM05D004140 ORTHO05D006116 7.4e-181 637.5 436 76.1
CANSAT80G0330 Cannabis sativa HOM05D004140 ORTHO05D006116 2.8e-180 635.6 428 75.9
Manes.08G025400 Manihot esculenta HOM05D004140 ORTHO05D006116 6.9e-179 630.9 435 74.9
MELO3C009474.2 Cucumis melo HOM05D004140 ORTHO05D006116 3.2e-176 622.1 432 74.3
Sed0020948 Sechium edule HOM05D004140 ORTHO05D006116 4.6e-175 618.2 432 74.3
Eucgr.K02037 Eucalyptus grandis HOM05D004140 ORTHO05D006116 3.9e-174 615.1 437 73.2
CsaV3_3G037290 Cucumis sativus L. HOM05D004140 ORTHO05D006116 1.1e-173 613.6 432 73.6
Rhsim07G0139000 Rhododendron simsii HOM05D004140 ORTHO05D006116 3.3e-173 612.1 441 71.7
PGR142G4281 Punica granatum HOM05D004140 ORTHO05D006116 7.4e-173 610.9 429 73.7
RcHm_v2.0_Chr3g0473691 Rosa chinensis HOM05D004140 ORTHO05D006116 2.4e-171 605.9 428 71.7
TAR633G1381 Trochodendron aralioides HOM05D004140 ORTHO05D006116 3.1e-171 605.5 431 70.5
FAN02G3405 Fragaria x ananassa HOM05D004140 ORTHO05D006116 9.1e-171 604.0 428 71.0
vmacro14235 Vaccinium macrocarpon HOM05D004140 ORTHO05D006116 9.1e-171 604.0 442 70.4
Nn6g34895 Nelumbo nucifera HOM05D004140 ORTHO05D006116 5.9e-170 601.3 432 72.2
FAN14G5862 Fragaria x ananassa HOM05D004140 ORTHO05D006116 7.7e-170 600.9 428 70.6
arahy.Tifrunner.gnm1.ann1.0JB8QE Arachis hypogaea HOM05D004140 ORTHO05D006116 1.7e-169 599.7 457 68.9
FAN05G3313 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.7e-169 599.7 428 70.6
COL.COLO4_29732 Corchorus olitorius HOM05D004140 ORTHO05D006116 3.8e-169 598.6 429 72.3
Lj2A137T30 Lonicera japonica HOM05D004140 ORTHO05D006116 6.5e-169 597.8 437 71.4
Medtr7g030010 Medicago truncatula HOM05D004140 ORTHO05D006116 8.5e-169 597.4 427 69.8
Medtr7g038740 Medicago truncatula HOM05D004140 ORTHO05D006116 8.5e-169 597.4 427 69.8
Gohir.D04G099900 Gossypium hirsutum HOM05D004140 ORTHO05D006116 1.1e-168 597.0 432 69.7
arahy.Tifrunner.gnm1.ann1.IX7NGG Arachis hypogaea HOM05D004140 ORTHO05D006116 1.4e-168 596.7 458 67.9
ClCG10G018960 Citrullus lanatus HOM05D004140 ORTHO05D006116 1.4e-168 596.7 432 72.9
Glyma.01G077300 Glycine max HOM05D004140 ORTHO05D006116 2.5e-168 595.9 427 71.0
Gorai.009G402800 Gossypium raimondii HOM05D004140 ORTHO05D006116 2.5e-168 595.9 432 69.4
MD12G1036400 Malus domestica HOM05D004140 ORTHO05D006116 5.5e-168 594.7 438 70.5
MD14G1023200 Malus domestica HOM05D004140 ORTHO05D006116 5.5e-168 594.7 442 69.7
FAN05G2644 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.6e-167 593.2 439 68.8
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 2.1e-167 592.8 358 80.2
Glyma.11G176309 Glycine max HOM05D004140 ORTHO05D006116 1.0e-166 590.5 427 70.7
Hma1.2p1_0084F.1_g043830 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 3.0e-166 589.0 431 71.5
Gohir.A04G062800 Gossypium hirsutum HOM05D004140 ORTHO05D006116 3.9e-166 588.6 432 69.0
Lalb_Chr07g0194001 Lupinus albus HOM05D004140 ORTHO05D006116 8.8e-166 587.4 438 68.7
Actinidia14741 Actinidia chinensis HOM05D004140 ORTHO05D006116 3.3e-165 585.5 448 67.2
Thecc.05G089300 Theobroma cacao HOM05D004140 ORTHO05D006116 3.3e-165 585.5 430 70.7
Actinidia18162 Actinidia chinensis HOM05D004140 ORTHO05D006116 6.3e-164 581.3 446 68.2
Aqoxy2G01189 Aquilegia oxysepala HOM05D004140 ORTHO05D006116 2.4e-163 579.3 427 68.9
VMungo1383G3240 Vigna mungo HOM05D004140 ORTHO05D006116 9.1e-163 577.4 432 67.8
GSVIVG01033846001 Vitis vinifera HOM05D004140 ORTHO05D006116 2.0e-162 576.2 340 81.8
Potri.004G090400 Populus trichocarpa HOM05D004140 ORTHO05D006116 1.2e-159 567.0 446 67.7
Sopen04g018570 Solanum pennellii HOM05D004140 ORTHO05D006116 8.0e-159 564.3 382 73.3
Peaxi162Scf01227g00030 Petunia axillaris HOM05D004140 ORTHO05D006116 3.9e-158 562.0 431 66.8
SGA_v2.0_scaffold13G06716 Striga asiatica HOM05D004140 ORTHO05D006116 3.9e-158 562.0 399 71.7
Atru.chr8.1534 Acer truncatum HOM05D004140 ORTHO05D006116 1.1e-157 560.5 431 66.6
Nitab4.5_0008893g0010 Nicotiana tabacum HOM05D004140 ORTHO05D006116 2.0e-157 559.7 437 67.0
Nitab4.5_0000071g0150 Nicotiana tabacum HOM05D004140 ORTHO05D006116 2.6e-157 559.3 432 66.9
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 3.3e-157 558.9 381 69.0
THA.LOC104823220 Tarenaya hassleriana HOM05D004140 ORTHO05D006116 2.2e-156 556.2 434 66.6
ATR0776G070 Amborella trichopoda HOM05D004140 ORTHO05D006116 4.8e-156 555.1 434 65.4
Sabra04G0060700 Salix brachista HOM05D004140 ORTHO05D006116 6.3e-156 554.7 438 66.9
DCAR_013387 Daucus carota HOM05D004140 ORTHO05D006116 3.5e-154 548.9 413 67.3
Migut.J01039 Erythranthe guttata HOM05D004140 ORTHO05D006116 3.5e-154 548.9 429 67.4
Lj1g0011596 Lotus japonicus HOM05D004140 ORTHO05D006116 5.9e-154 548.1 437 65.2
CAN.G1407.2 Capsicum annuum HOM05D004140 ORTHO05D006116 1.3e-153 547.0 429 66.4
Sc02g0000260 Simmondsia chinensis HOM05D004140 ORTHO05D006116 2.2e-153 546.2 340 77.9
CSS0000051 Camellia sinensis var. sinensis HOM05D004140 ORTHO05D006116 3.8e-153 545.4 353 78.2
Solyc04g049130.4 Solanum lycopersicum HOM05D004140 ORTHO05D006116 1.1e-152 543.9 360 75.6
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 1.6e-151 540.0 362 72.9
Ciclev10013333m.g Citrus clementina HOM05D004140 ORTHO05D006116 3.6e-151 538.9 433 64.7
Duzib093G1424 Durio zibethinus HOM05D004140 ORTHO05D006116 6.1e-151 538.1 432 67.4
HanXRQChr05g0163581 Helianthus annuus HOM05D004140 ORTHO05D006116 1.4e-150 537.0 434 63.1
AT5G03900 Arabidopsis thaliana HOM05D004140 ORTHO05D006116 1.3e-148 530.4 434 62.7
SalBow3G3032 Salvia bowleyana HOM05D004140 ORTHO05D006116 4.8e-148 528.5 437 64.3
AL6G13480 Arabidopsis lyrata HOM05D004140 ORTHO05D006116 8.2e-148 527.7 439 62.4
Carub.0006s0285 Capsella rubella HOM05D004140 ORTHO05D006116 8.2e-148 527.7 439 63.3
Cc06_g05780 Coffea canephora HOM05D004140 ORTHO05D006116 1.4e-147 526.9 340 75.3
Lsat_1_v5_gn_5_164821 Lactuca sativa HOM05D004140 ORTHO05D006116 5.3e-147 525.0 445 62.0
Phvul.008G154100 Phaseolus vulgaris HOM05D004140 ORTHO05D006116 1.2e-146 523.9 433 63.7
BolC9t60037H Brassica oleracea HOM05D004140 ORTHO05D006116 2.2e-145 519.6 432 62.0
C09p73020 Brassica napus HOM05D004140 ORTHO05D006116 6.5e-145 518.1 432 61.8
Sp6g38830 Schrenkiella parvula HOM05D004140 ORTHO05D006116 4.2e-144 515.4 433 62.1
TPR.G39122 Trifolium pratense HOM05D004140 ORTHO05D006116 9.4e-144 514.2 441 60.3
C02p01600 Brassica napus HOM05D004140 ORTHO05D006116 1.2e-143 513.8 433 63.0
BraA02t04791Z Brassica rapa HOM05D004140 ORTHO05D006116 1.2e-143 513.8 431 62.9
A10p32220 Brassica napus HOM05D004140 ORTHO05D006116 2.1e-143 513.1 435 61.4
BraA10t45265Z Brassica rapa HOM05D004140 ORTHO05D006116 2.1e-143 513.1 435 61.4
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 2.7e-143 512.7 392 66.6
Aa31LG1G21380 Aethionema arabicum HOM05D004140 ORTHO05D006116 3.6e-143 512.3 438 61.6
Hma1.2p1_0820F.1_g223840 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 4.7e-143 511.9 431 64.3
CARHR209360 Cardamine hirsuta HOM05D004140 ORTHO05D006116 1.4e-142 510.4 439 60.8
BolC2t06125H Brassica oleracea HOM05D004140 ORTHO05D006116 2.3e-142 509.6 433 63.0
BcaC06g32093 Brassica carinata HOM05D004140 ORTHO05D006116 4.4e-141 505.4 430 60.7
Thhalv10013253m.g Eutrema salsugineum HOM05D004140 ORTHO05D006116 1.3e-140 503.8 437 61.6
unitig_578.g16025 Utricularia gibba HOM05D004140 ORTHO05D006116 4.1e-139 498.8 435 61.1
PSO384G3764 Papaver somniferum HOM05D004140 ORTHO05D006116 3.5e-138 495.7 447 59.1
PSO339G4989 Papaver somniferum HOM05D004140 ORTHO05D006116 5.9e-138 495.0 449 59.2
CDE08G0731 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 1.2e-135 487.3 318 72.0
AUR62028518 Chenopodium quinoa HOM05D004140 ORTHO05D006116 8.9e-134 481.1 403 64.3
Ca_19610_v3 Cicer arietinum L. HOM05D004140 ORTHO05D006116 2.6e-133 479.6 309 74.8
EL10Ac7g16915 Beta vulgaris HOM05D004140 ORTHO05D006116 9.2e-131 471.1 404 60.6
Prupe.7G109900 Prunus persica HOM05D004140 ORTHO05D006116 4.5e-130 468.8 298 75.5
AUR62006183 Chenopodium quinoa HOM05D004140 ORTHO05D006116 3.3e-128 462.6 495 53.7
Zm00001eb242770 Zea mays HOM05D004140 ORTHO05D006116 2.8e-127 459.5 362 63.0
Os02g0533000 Oryza sativa ssp. japonica HOM05D004140 ORTHO05D006116 2.6e-125 453.0 375 64.0
FvH4_6g18720 Fragaria vesca HOM05D004140 ORTHO05D006116 3.4e-125 452.6 311 71.4
BcaB05g21796 Brassica carinata HOM05D004140 ORTHO05D006116 3.2e-123 446.0 404 58.9
HPP92_005468 Vanilla planifolia HOM05D004140 ORTHO05D006116 7.0e-123 444.9 376 63.6
Hund19931 Selenicereus undatus HOM05D004140 ORTHO05D006116 7.8e-122 441.4 479 53.2
HanXRQChr01g0001941 Helianthus annuus HOM05D004140 ORTHO05D006116 3.6e-119 432.6 436 55.3
DCAR_007754 Daucus carota HOM05D004140 ORTHO05D006116 1.3e-116 424.1 349 62.5
Mapoly0014s0147 Marchantia polymorpha HOM05D004140 ORTHO05D006116 4.6e-114 415.6 378 57.4
Migut.J01040 Erythranthe guttata HOM05D004140 ORTHO05D006116 1.7e-113 413.7 445 54.4
Pp3c24_800 Physcomitrium patens HOM05D004140 ORTHO05D006116 5.6e-112 408.7 363 60.1
RcHm_v2.0_Chr3g0473761 Rosa chinensis HOM05D004140 ORTHO05D006116 1.2e-106 391.0 449 50.8
AagrBONN_evm.TU.Sc2ySwM_117.4009 Anthoceros agrestis HOM05D004140 ORTHO05D006116 1.0e-105 387.9 377 53.1
Nitab4.5_0004212g0030 Nicotiana tabacum HOM05D004140 ORTHO05D006116 5.4e-99 365.5 301 64.1
Psat3g173320 Pisum sativum HOM05D004140 ORTHO05D006116 5.1e-97 359.0 283 66.1
Cpa.g.sc5.17 Carica papaya HOM05D004140 ORTHO05D006116 1.6e-95 354.0 402 53.2
CBR_g12587 Chara braunii HOM05D004140 ORTHO05D006116 2.9e-92 343.2 373 48.8
SMO137G0276 Selaginella moellendorffii HOM05D004140 ORTHO05D006116 1.9e-88 330.5 377 49.1
DCAR_020746 Daucus carota HOM05D004140 ORTHO05D006116 3.6e-87 326.2 397 48.1
PRCOL_00000272 Prasinoderma coloniale HOM05D004140 ORTHO05D006116 1.2e-74 284.6 354 44.4
MCO08G276 Micromonas commoda HOM05D004140 ORTHO05D006116 8.2e-71 271.9 352 43.2
Cre07.g338350 Chlamydomonas reinhardtii HOM05D004140 ORTHO05D006116 3.0e-65 253.4 360 41.7
Cc00_g34730 Coffea canephora HOM05D004140 ORTHO05D006116 3.9e-65 253.1 239 61.9
HanXRQChr01g0001931 Helianthus annuus HOM05D004140 ORTHO05D006116 5.5e-59 232.6 180 65.6
FvH4_6g18750 Fragaria vesca HOM05D004140 ORTHO05D006116 1.9e-51 207.6 273 45.4
Psat3g173280 Pisum sativum HOM05D004140 ORTHO05D006116 1.0e-49 201.8 121 78.5
SEGI_29241 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 3.9e-49 199.9 160 64.4
RcHm_v2.0_Chr3g0473731 Rosa chinensis HOM05D004140 ORTHO05D006116 2.1e-42 177.6 168 60.7
FvH4_6g18760 Fragaria vesca HOM05D004140 ORTHO05D006116 3.3e-40 170.2 174 56.9
RcHm_v2.0_Chr2g0168601 Rosa chinensis HOM05D004140 ORTHO05D006116 1.1e-38 165.2 184 51.6
Peaxi162Scf00858g00312 Petunia axillaris HOM05D004140 ORTHO05D006116 1.2e-37 161.8 153 62.1
FAN14G0820 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.0e-37 161.0 166 56.6
FAN05G3929 Fragaria x ananassa HOM05D004140 ORTHO05D018624 3.8e-36 156.8 109 76.1
FAN05G4146 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.9e-35 154.5 105 75.2
FvH4_6g48690 Fragaria vesca HOM05D004140 ORTHO05D006116 2.5e-35 154.1 181 49.7
RcHm_v2.0_Chr3g0473721 Rosa chinensis HOM05D004140 ORTHO05D006116 2.5e-35 154.1 100 71.0
FAN02G1609 Fragaria x ananassa HOM05D004140 ORTHO05D006116 9.4e-35 152.1 181 49.2
Ca_23048_v3 Cicer arietinum L. HOM05D004140 ORTHO05D018624 2.4e-30 137.5 134 60.4
FvH4_6g48680 Fragaria vesca HOM05D004140 ORTHO05D045602 2.4e-30 137.5 177 48.6
FAN14G1397 Fragaria x ananassa HOM05D004140 ORTHO05D045602 4.5e-29 133.3 162 49.4
FAN09G1572 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.9e-28 130.6 162 48.8
FAN14G0184 Fragaria x ananassa HOM05D004140 ORTHO05D006116 6.5e-28 129.4 141 51.8
Lj2A1003T9 Lonicera japonica HOM05D004140 ORTHO05D006116 8.5e-28 129.0 100 64.0
SEGI_03177 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 1.5e-27 128.3 105 57.1
RcHm_v2.0_Chr6g0257921 Rosa chinensis HOM05D004140 ORTHO05D006116 3.0e-25 120.6 79 75.9
FvH4_6g18751 Fragaria vesca HOM05D004140 ORTHO05D018624 2.0e-21 107.8 116 56.9
FAN02G1460 Fragaria x ananassa HOM05D004140 ORTHO05D018624 5.9e-21 106.3 70 77.1
FvH4_6g48650 Fragaria vesca HOM05D004140 ORTHO05D197702 2.1e-18 97.8 173 37.0
CAN.G2500.2 Capsicum annuum HOM05D004140 ORTHO05D018624 8.0e-18 95.9 133 50.4
FvH4_6g48651 Fragaria vesca HOM05D004140 ORTHO05D045442 5.2e-17 93.2 165 36.4
FAN09G0971 Fragaria x ananassa HOM05D004140 ORTHO05D045442 5.2e-17 93.2 165 36.4
SEGI_11477 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 5.7e-16 89.7 92 52.2
BcaC03g12977 Brassica carinata HOM05D004140 ORTHO05D006116 7.5e-16 89.4 64 62.5
MCO05G565 Micromonas commoda HOM05D004140 ORTHO05D269347 3.7e-15 87.0 144 31.9
BcaC05g27055 Brassica carinata HOM05D004140 ORTHO05D018624 8.9e-09 65.9 45 73.3
C05p29120 Brassica napus HOM05D004140 ORTHO05D018624 8.9e-09 65.9 45 73.3
BolC5t31642H Brassica oleracea HOM05D004140 ORTHO05D018624 8.9e-09 65.9 45 73.3
FAN05G4745 Fragaria x ananassa HOM05D000532 ORTHO05D002414 7.5e-08 62.8 104 36.5
C02p01250 Brassica napus HOM05D004140 ORTHO05D010099 1.7e-07 61.6 43 76.7


User provided reference genes

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