Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016593 Carpinus fangiana HOM05D008297 ORTHO05D010093 1.9e-63 245.7 128 100.0
Haze_19594 Corylus avellana HOM05D008297 ORTHO05D010093 2.9e-56 221.9 127 88.2
CiPaw.10G008500 Carya illinoinensis HOM05D008297 ORTHO05D010093 1.2e-38 163.3 129 65.1
CiPaw.09G012800 Carya illinoinensis HOM05D008297 ORTHO05D010093 3.3e-36 155.2 124 64.5
QL07p039287 Quercus lobata HOM05D008297 ORTHO05D010093 5.3e-34 147.9 138 58.0
Prupe.7G112700 Prunus persica HOM05D008297 ORTHO05D010093 2.7e-22 109.0 113 53.1
FAN09G3035 Fragaria x ananassa HOM05D008297 ORTHO05D010093 5.2e-21 104.8 103 50.5
FAN02G0390 Fragaria x ananassa HOM05D008297 ORTHO05D010093 8.8e-21 104.0 103 50.5
FAN05G0196 Fragaria x ananassa HOM05D008297 ORTHO05D010093 2.0e-20 102.8 103 50.5
FvH4_6g18470 Fragaria vesca HOM05D008297 ORTHO05D010093 4.4e-20 101.7 103 49.5
FAN14G3031 Fragaria x ananassa HOM05D008297 ORTHO05D010093 4.4e-20 101.7 103 49.5
FAN05G0841 Fragaria x ananassa HOM05D008297 ORTHO05D010093 9.7e-20 100.5 103 49.5
CANSAT80G2610 Cannabis sativa HOM05D008297 ORTHO05D010093 2.2e-19 99.4 120 44.2
Glyma.10G071300 Glycine max HOM05D008297 ORTHO05D010093 2.8e-19 99.0 100 54.0
Medtr1g060240 Medicago truncatula HOM05D008297 ORTHO05D010093 3.7e-19 98.6 101 52.5
Dinv31675 Davidia involucrata HOM05D008297 ORTHO05D010093 4.8e-19 98.2 122 45.1
MD12G1023800 Malus domestica HOM05D008297 ORTHO05D010093 6.3e-19 97.8 101 50.5
TWI74G0146 Tripterygium wilfordii HOM05D008297 ORTHO05D010093 6.3e-19 97.8 76 59.2
Lalb_Chr06g0173271 Lupinus albus HOM05D008297 ORTHO05D010093 8.2e-19 97.4 100 50.0
Lj5g0010223 Lotus japonicus HOM05D008297 ORTHO05D010093 1.8e-18 96.3 101 52.5
Thecc.05G087300 Theobroma cacao HOM05D008297 ORTHO05D010093 1.8e-18 96.3 122 45.9
MD14G1021000 Malus domestica HOM05D008297 ORTHO05D010093 1.6e-17 93.2 99 48.5
Manes.08G024300 Manihot esculenta HOM05D008297 ORTHO05D010093 2.0e-17 92.8 62 66.1
CiPaw.10G008800 Carya illinoinensis HOM05D008297 ORTHO05D010093 5.0e-16 88.2 121 47.1
Cpa.g.sc5.36 Carica papaya HOM05D008297 ORTHO05D010093 1.9e-15 86.3 57 70.2
Duzib093G1918 Durio zibethinus HOM05D008297 ORTHO05D010093 2.5e-15 85.9 96 44.8
Manes.09G056350 Manihot esculenta HOM05D008297 ORTHO05D010093 3.2e-15 85.5 56 73.2
TPR.G24588 Trifolium pratense HOM05D008297 ORTHO05D010093 7.2e-15 84.3 101 44.6
Gohir.D01G196400 Gossypium hirsutum HOM05D008297 ORTHO05D010093 9.4e-15 84.0 63 57.1
Gorai.002G240600 Gossypium raimondii HOM05D008297 ORTHO05D010093 9.4e-15 84.0 63 57.1
Potri.004G142600 Populus trichocarpa HOM05D008297 ORTHO05D010093 1.2e-14 83.6 88 53.4
VMungo0720G0603 Vigna mungo HOM05D008297 ORTHO05D010093 2.7e-14 82.4 92 50.0
MSTRG.19253 Avicennia marina HOM05D008297 ORTHO05D010093 3.6e-14 82.0 87 50.6
Phvul.007G229200 Phaseolus vulgaris HOM05D008297 ORTHO05D010093 4.7e-14 81.6 87 49.4
Ciclev10013717m.g Citrus clementina HOM05D008297 ORTHO05D010093 6.1e-14 81.3 71 53.5
Actinidia31275 Actinidia chinensis HOM05D008297 ORTHO05D010093 8.0e-14 80.9 90 51.1
Gohir.A01G207000 Gossypium hirsutum HOM05D008297 ORTHO05D010093 1.8e-13 79.7 53 60.4
PGR004G2620 Punica granatum HOM05D008297 ORTHO05D010093 2.3e-13 79.3 122 40.2
RcHm_v2.0_Chr3g0473001 Rosa chinensis HOM05D008297 ORTHO05D010093 2.3e-13 79.3 70 60.0
COL.COLO4_29766 Corchorus olitorius HOM05D008297 ORTHO05D010093 3.0e-13 79.0 60 60.0
Nn5g28531 Nelumbo nucifera HOM05D008297 ORTHO05D010093 3.0e-13 79.0 51 70.6
MSTRG.5838 Avicennia marina HOM05D008297 ORTHO05D010093 4.0e-13 78.6 52 65.4
ECA233G2556 Erigeron canadensis HOM05D000444 ORTHO05D000489 1.2e-12 77.0 52 63.5
Nn6g34936 Nelumbo nucifera HOM05D008297 ORTHO05D010093 1.2e-12 77.0 81 51.9
Rhsim04G0131800 Rhododendron simsii HOM05D008297 ORTHO05D010093 5.7e-12 74.7 57 61.4
AUR62033499 Chenopodium quinoa HOM05D008297 ORTHO05D010093 9.8e-12 73.9 53 64.2
arahy.Tifrunner.gnm1.ann1.MHCF32 Arachis hypogaea HOM05D057207 ORTHO05D010093 1.7e-11 73.2 117 38.5
arahy.Tifrunner.gnm1.ann1.SCUD5X Arachis hypogaea HOM05D057207 ORTHO05D010093 1.7e-11 73.2 117 38.5
EL10Ac7g16932 Beta vulgaris HOM05D008297 ORTHO05D010093 1.7e-11 73.2 68 52.9
Oeu056894.1 Olea europaea HOM05D008297 ORTHO05D010093 1.7e-11 73.2 100 44.0
AUR62028547 Chenopodium quinoa HOM05D008297 ORTHO05D010093 3.7e-11 72.0 53 62.3
Ah.15g090940 Amaranthus hybridus HOM05D008297 ORTHO05D010093 1.1e-10 70.5 71 50.7
Lsat_1_v5_gn_6_24180 Lactuca sativa HOM05D008297 ORTHO05D010093 1.1e-10 70.5 74 48.6
MELO3C009464.2 Cucumis melo HOM05D008297 ORTHO05D010093 1.8e-10 69.7 89 47.2
Psat6g014040 Pisum sativum HOM05D008297 ORTHO05D010093 9.1e-10 67.4 107 39.3
CsaV3_3G037180 Cucumis sativus L. HOM05D008297 ORTHO05D010093 3.5e-09 65.5 89 43.8
Eucgr.A01506 Eucalyptus grandis HOM05D008297 ORTHO05D010093 3.5e-09 65.5 127 37.0
TAR633G2623 Trochodendron aralioides HOM05D008297 ORTHO05D010093 3.5e-09 65.5 91 48.4
Migut.J01050 Erythranthe guttata HOM05D008297 ORTHO05D010093 1.7e-08 63.2 51 62.7
Aqoxy6G02838 Aquilegia oxysepala HOM05D008297 ORTHO05D010093 2.2e-08 62.8 71 50.7
Sed0021862 Sechium edule HOM05D008297 ORTHO05D010093 2.9e-08 62.4 57 63.2
MBI17_g01565_MAGBIO Magnolia biondii HOM05D008297 ORTHO05D010093 5.0e-08 61.6 53 54.7
Thhalv10017448m.g Eutrema salsugineum HOM05D012350 ORTHO05D010093 1.9e-07 59.7 72 45.8
ClCG10G019060 Citrullus lanatus HOM05D008297 ORTHO05D010093 2.5e-07 59.3 55 60.0
Sp4g18510 Schrenkiella parvula HOM05D012350 ORTHO05D010093 7.2e-07 57.8 71 42.3
AT2G36295 Arabidopsis thaliana HOM05D012350 ORTHO05D010093 8.0e-06 54.3 71 47.9
Carub.0004s1804 Capsella rubella HOM05D012350 ORTHO05D010093 8.0e-06 54.3 61 42.6


User provided reference genes

Program Settings