Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016575 Carpinus fangiana HOM05D005512 ORTHO05D006716 4.5e-286 987.3 508 100.0
Haze_19571 Corylus avellana HOM05D005512 ORTHO05D006716 2.0e-249 865.5 505 89.7
QL07p039701 Quercus lobata HOM05D005512 ORTHO05D006716 1.4e-173 613.6 538 66.9
CiPaw.09G010900 Carya illinoinensis HOM05D005512 ORTHO05D006716 1.5e-164 583.6 503 67.4
CiPaw.10G007200 Carya illinoinensis HOM05D005512 ORTHO05D006716 4.4e-156 555.4 552 60.3
Prupe.7G114400 Prunus persica HOM05D005512 ORTHO05D006716 8.3e-139 498.0 508 60.2
RcHm_v2.0_Chr3g0472661 Rosa chinensis HOM05D005512 ORTHO05D006716 4.1e-130 469.2 500 57.8
FAN14G2179 Fragaria x ananassa HOM05D005512 ORTHO05D006716 4.4e-124 449.1 498 55.6
Dinv21230 Davidia involucrata HOM05D005512 ORTHO05D006716 1.7e-123 447.2 500 55.8
FvH4_6g18250 Fragaria vesca HOM05D005512 ORTHO05D006716 2.2e-123 446.8 501 54.9
FAN09G0635 Fragaria x ananassa HOM05D005512 ORTHO05D006716 8.3e-123 444.9 501 55.3
FAN05G0202 Fragaria x ananassa HOM05D005512 ORTHO05D006716 1.1e-122 444.5 522 54.4
MD12G1022300 Malus domestica HOM05D005512 ORTHO05D006716 3.2e-122 443.0 510 54.9
FAN02G2015 Fragaria x ananassa HOM05D005512 ORTHO05D006716 4.1e-122 442.6 511 55.0
FAN05G5667 Fragaria x ananassa HOM05D005512 ORTHO05D006716 1.5e-119 434.1 553 51.5
Dinv31662 Davidia involucrata HOM05D005512 ORTHO05D006716 4.7e-118 429.1 540 51.9
Ciclev10013541m.g Citrus clementina HOM05D005512 ORTHO05D006716 1.4e-117 427.6 522 52.9
Potri.006G114600 Populus trichocarpa HOM05D005512 ORTHO05D006716 2.1e-113 413.7 524 52.9
FAN14G2174 Fragaria x ananassa HOM05D005512 ORTHO05D006716 5.1e-112 409.1 488 54.5
Sabra06G0089500 Salix brachista HOM05D005512 ORTHO05D006716 3.3e-111 406.4 506 52.4
MD14G1019200 Malus domestica HOM05D005512 ORTHO05D006716 4.3e-111 406.0 486 53.5
TWI74G0342 Tripterygium wilfordii HOM05D005512 ORTHO05D006716 1.6e-110 404.1 517 51.6
TWI53G0330 Tripterygium wilfordii HOM05D005512 ORTHO05D006716 3.2e-106 389.8 508 50.8
Manes.09G059527 Manihot esculenta HOM05D005512 ORTHO05D006716 5.4e-106 389.0 502 51.0
Cpa.g.sc5.51 Carica papaya HOM05D005512 ORTHO05D006716 4.6e-105 386.0 527 49.5
CANSAT80G2511 Cannabis sativa HOM05D005512 ORTHO05D006716 6.4e-99 365.5 500 50.6
Duzib128G1345 Durio zibethinus HOM05D005512 ORTHO05D006716 6.0e-89 332.4 619 41.4
GSVIVG01033811001 Vitis vinifera HOM05D005512 ORTHO05D006716 3.4e-84 316.6 532 44.0
CsaV3_3G037090 Cucumis sativus L. HOM05D005512 ORTHO05D006716 1.7e-83 314.3 508 44.1
Thecc.05G085400 Theobroma cacao HOM05D005512 ORTHO05D006716 3.8e-83 313.2 389 50.9
ClCG10G019160 Citrullus lanatus HOM05D005512 ORTHO05D006716 1.1e-82 311.6 537 42.6
MELO3C009455.2 Cucumis melo HOM05D005512 ORTHO05D006716 4.2e-82 309.7 514 43.4
COL.COLO4_29783 Corchorus olitorius HOM05D005512 ORTHO05D006716 1.8e-80 304.3 609 40.6
Sp1g17370 Schrenkiella parvula HOM05D005512 ORTHO05D006716 3.0e-80 303.5 512 43.6
AT1G19490 Arabidopsis thaliana HOM05D005512 ORTHO05D006716 6.3e-78 295.8 482 44.2
Sed0026834 Sechium edule HOM05D005512 ORTHO05D006716 3.1e-77 293.5 531 41.6
CARHR020060 Cardamine hirsuta HOM05D005512 ORTHO05D006716 5.3e-77 292.7 478 44.1
AL1G32240 Arabidopsis lyrata HOM05D005512 ORTHO05D006716 4.5e-76 289.7 481 43.5
Thhalv10009681m.g Eutrema salsugineum HOM05D005512 ORTHO05D006716 1.0e-75 288.5 493 43.4
Actinidia10388 Actinidia chinensis HOM05D005512 ORTHO05D006716 5.0e-75 286.2 515 43.3
Duzib093G0027 Durio zibethinus HOM05D005512 ORTHO05D006716 5.0e-75 286.2 579 40.6
Glyma.19G193400 Glycine max HOM05D005512 ORTHO05D006716 8.5e-75 285.4 507 44.6
Gohir.D04G102100 Gossypium hirsutum HOM05D005512 ORTHO05D006716 5.5e-74 282.7 583 39.1
Nn6g34983 Nelumbo nucifera HOM05D005512 ORTHO05D006716 5.5e-74 282.7 498 43.4
A06p15670 Brassica napus HOM05D005512 ORTHO05D006716 2.1e-73 280.8 514 43.6
BraA06t24676Z Brassica rapa HOM05D005512 ORTHO05D006716 3.6e-73 280.0 518 43.1
Carub.0001s1906 Capsella rubella HOM05D005512 ORTHO05D006716 3.6e-73 280.0 479 42.8
Lj1g0021236 Lotus japonicus HOM05D005512 ORTHO05D006716 3.6e-73 280.0 421 46.3
Gorai.009G405400 Gossypium raimondii HOM05D005512 ORTHO05D006716 3.0e-72 276.9 586 39.4
C05p17910 Brassica napus HOM05D005512 ORTHO05D006716 3.3e-71 273.5 515 43.3
Atru.chr8.1592 Acer truncatum HOM05D005512 ORTHO05D006716 5.7e-71 272.7 367 50.7
Gohir.A04G064600 Gossypium hirsutum HOM05D005512 ORTHO05D006716 7.4e-71 272.3 564 38.8
arahy.Tifrunner.gnm1.ann1.EPRD9B Arachis hypogaea HOM05D005512 ORTHO05D006716 6.3e-70 269.2 508 39.6
Aa31LG7G4150 Aethionema arabicum HOM05D005512 ORTHO05D006716 6.9e-69 265.8 514 41.8
Lalb_Chr20g0112081 Lupinus albus HOM05D005512 ORTHO05D006716 7.2e-66 255.8 497 40.8
BcaB03g14441 Brassica carinata HOM05D005512 ORTHO05D006716 1.6e-65 254.6 495 42.6
PGR142G2241 Punica granatum HOM05D005512 ORTHO05D006716 5.1e-64 249.6 526 39.2
arahy.Tifrunner.gnm1.ann1.S7MLB0 Arachis hypogaea HOM05D005512 ORTHO05D006716 1.5e-63 248.1 526 37.3
THA.LOC104804992 Tarenaya hassleriana HOM05D005512 ORTHO05D006716 4.4e-63 246.5 536 38.8
Aqoxy4G02826 Aquilegia oxysepala HOM05D005512 ORTHO05D006716 7.4e-63 245.7 505 39.8
Hma1.2p1_0084F.1_g043460 Hydrangea macrophylla HOM05D005512 ORTHO05D006716 2.2e-62 244.2 523 40.0
PSO384G3501 Papaver somniferum HOM05D005512 ORTHO05D006716 1.2e-60 238.4 532 37.8
VMungo1383G0830 Vigna mungo HOM05D005512 ORTHO05D006716 3.2e-58 230.3 367 43.9
Lj3A1000G63 Lonicera japonica HOM05D005512 ORTHO05D006716 4.2e-58 229.9 476 40.1
Phvul.001G188300 Phaseolus vulgaris HOM05D005512 ORTHO05D006716 9.4e-58 228.8 523 38.2
TAR623G0330 Trochodendron aralioides HOM05D005512 ORTHO05D006716 5.7e-55 219.5 304 50.3
Actinidia08422 Actinidia chinensis HOM05D005512 ORTHO05D006716 1.0e-51 208.8 519 35.6
Medtr7g104190 Medicago truncatula HOM05D005512 ORTHO05D006716 3.8e-51 206.8 486 36.4
ECA238G0726 Erigeron canadensis HOM05D000284 ORTHO05D001229 6.5e-51 206.1 493 36.7
PSO339G0823 Papaver somniferum HOM05D005512 ORTHO05D006716 7.2e-50 202.6 431 39.0
TPR.G19527 Trifolium pratense HOM05D005512 ORTHO05D006716 1.6e-49 201.4 513 35.7
Cc08_g02550 Coffea canephora HOM05D005512 ORTHO05D006716 4.7e-49 199.9 407 37.8
Eucgr.K02060 Eucalyptus grandis HOM05D005512 ORTHO05D006716 1.8e-48 198.0 323 41.5
Psat3g034880 Pisum sativum HOM05D005512 ORTHO05D006716 5.2e-48 196.4 517 36.0
Rhsim03G0078100 Rhododendron simsii HOM05D005512 ORTHO05D006716 7.5e-47 192.6 472 36.7
Lj2A133G43 Lonicera japonica HOM05D005512 ORTHO05D006716 2.2e-46 191.0 488 35.2
CSS0012282 Camellia sinensis var. sinensis HOM05D005512 ORTHO05D006716 3.7e-46 190.3 429 36.1
MBI17_g31309_MAGBIO Magnolia biondii HOM05D005512 ORTHO05D006716 1.6e-44 184.9 497 35.4
Lsat_1_v5_gn_2_22561 Lactuca sativa HOM05D005512 ORTHO05D006716 2.7e-41 174.1 326 42.3
MSTRG.10360 Avicennia marina HOM05D005512 ORTHO05D006716 4.7e-41 173.3 375 34.4
Sopen09g004520 Solanum pennellii HOM05D005512 ORTHO05D006716 1.8e-40 171.4 387 36.7
Nitab4.5_0005756g0030 Nicotiana tabacum HOM05D005512 ORTHO05D006716 5.2e-40 169.9 359 39.3
Solyc09g009760.1 Solanum lycopersicum HOM05D005512 ORTHO05D006716 1.7e-38 164.9 387 35.7
Glyma.03G193300 Glycine max HOM05D005512 ORTHO05D006716 1.1e-37 162.2 486 35.2
Nn2g14077 Nelumbo nucifera HOM05D005512 ORTHO05D006716 9.1e-37 159.1 254 46.1
Nitab4.5_0000794g0130 Nicotiana tabacum HOM05D005512 ORTHO05D006716 1.2e-36 158.7 460 33.9
QL07p039646 Quercus lobata HOM05D005512 ORTHO05D006716 1.3e-35 155.2 321 37.4
AUR62028570 Chenopodium quinoa HOM05D005512 ORTHO05D006716 5.0e-35 153.3 392 34.9
HanXRQChr16g0518951 Helianthus annuus HOM05D005512 ORTHO05D006716 1.1e-34 152.1 475 34.1
Oeu056908.1 Olea europaea HOM05D005512 ORTHO05D006716 1.1e-34 152.1 442 32.8
Sc20g0006160 Simmondsia chinensis HOM05D005512 ORTHO05D006716 7.2e-34 149.4 489 32.7
Peaxi162Scf00752g00310 Petunia axillaris HOM05D005512 ORTHO05D006716 8.0e-33 146.0 464 31.9
Peaxi162Scf36127g00005 Petunia axillaris HOM05D005512 ORTHO05D006716 8.0e-33 146.0 464 31.9
AUR62033525 Chenopodium quinoa HOM05D005512 ORTHO05D006716 6.8e-32 142.9 394 34.8
Nitab4.5_0011780g0020 Nicotiana tabacum HOM05D005512 ORTHO05D006716 1.7e-30 138.3 495 31.7
CAN.G397.46 Capsicum annuum HOM05D005512 ORTHO05D006716 4.9e-30 136.7 393 35.1
ATR0820G165 Amborella trichopoda HOM05D005512 ORTHO05D006716 9.5e-26 122.5 328 33.5
EL10Ac7g16952 Beta vulgaris HOM05D005512 ORTHO05D006716 4.7e-25 120.2 208 39.9
Hund14853 Selenicereus undatus HOM05D005512 ORTHO05D006716 8.0e-25 119.4 348 33.6
Lsat_1_v5_gn_6_66321 Lactuca sativa HOM05D005512 ORTHO05D006716 1.0e-24 119.0 264 37.9
Ca_08983_v3 Cicer arietinum L. HOM05D005512 ORTHO05D006716 3.1e-24 117.5 419 31.3
PGSC0003DMG402008883 Solanum tuberosum HOM05D005512 ORTHO05D006716 4.4e-23 113.6 329 32.2
PGSC0003DMG400028166 Solanum tuberosum HOM05D005512 ORTHO05D006716 2.9e-22 110.9 332 33.1
Eucgr.K02061 Eucalyptus grandis HOM05D005512 ORTHO05D006716 8.3e-22 109.4 183 46.4
CDE06G1506 Ceratophyllum demersum HOM05D000077 ORTHO05D002348 1.4e-21 108.6 363 32.0
DCAR_020766 Daucus carota HOM05D005512 ORTHO05D006716 1.9e-21 108.2 308 36.7
Glyma.17G197300 Glycine max HOM05D005512 ORTHO05D006716 7.0e-21 106.3 108 59.3
CDE08G0293 Ceratophyllum demersum HOM05D005512 ORTHO05D006716 1.2e-20 105.5 230 37.4
DCAR_009151 Daucus carota HOM05D005512 ORTHO05D006716 7.8e-20 102.8 515 28.5
Glyma.19G084800 Glycine max HOM05D005512 ORTHO05D006716 6.6e-19 99.8 108 57.4
Solyc10g083380.2 Solanum lycopersicum HOM05D005512 ORTHO05D006716 3.3e-18 97.4 171 43.3
Sopen10g032880 Solanum pennellii HOM05D005512 ORTHO05D006716 4.7e-17 93.6 171 42.1
HPP92_009043 Vanilla planifolia HOM05D005512 ORTHO05D006716 7.5e-15 86.3 295 34.2
Zm00001eb197160 Zea mays HOM05D005512 ORTHO05D006716 3.7e-14 84.0 81 58.0
Os11g0154900 Oryza sativa ssp. japonica HOM05D005512 ORTHO05D006716 4.1e-13 80.5 164 39.6
Oeu040522.1 Olea europaea HOM05D005512 ORTHO05D006716 5.4e-13 80.1 356 27.8
Zm00001eb406920 Zea mays HOM05D005512 ORTHO05D006716 1.6e-12 78.6 88 52.3
Actinidia02438 Actinidia chinensis HOM05D005512 ORTHO05D006716 2.1e-12 78.2 219 33.3
Atru.chr8.1591 Acer truncatum HOM05D005512 ORTHO05D006716 3.5e-12 77.4 50 78.0
Pp3c17_11650 Physcomitrium patens HOM05D005512 ORTHO05D006716 4.6e-12 77.0 134 42.5
SalBow3G2059 Salvia bowleyana HOM05D005512 ORTHO05D006716 1.3e-11 75.5 183 32.2
Pp3c14_6250 Physcomitrium patens HOM05D005512 ORTHO05D006716 1.6e-09 68.6 169 36.1
unitig_22.g5122 Utricularia gibba HOM05D005512 ORTHO05D006716 3.6e-09 67.4 218 32.6
BcaC05g25849 Brassica carinata HOM05D005512 ORTHO05D006716 1.1e-08 65.9 155 42.6
Sc07g0005480 Simmondsia chinensis HOM05D005512 ORTHO05D006716 1.8e-08 65.1 186 37.1
ATR0820G116 Amborella trichopoda HOM05D005512 ORTHO05D006716 2.3e-08 64.7 191 36.6
AagrBONN_evm.TU.Sc2ySwM_117.2312 Anthoceros agrestis HOM05D005512 ORTHO05D006716 4.4e-07 60.5 207 34.3


User provided reference genes

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