Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016561 Carpinus fangiana HOM05D005095 ORTHO05D006156 5.3e-192 674.1 318 100.0
CiPaw.10G006700 Carya illinoinensis HOM05D005095 ORTHO05D006156 3.3e-162 575.1 307 87.9
QL07p039953 Quercus lobata HOM05D005095 ORTHO05D006156 2.2e-153 545.8 323 79.9
MD12G1020700 Malus domestica HOM05D005095 ORTHO05D006156 2.0e-151 539.3 313 79.2
Prupe.7G115300 Prunus persica HOM05D005095 ORTHO05D006156 4.5e-151 538.1 318 78.0
Dinv21237 Davidia involucrata HOM05D005095 ORTHO05D006156 7.7e-151 537.3 314 80.3
Manes.08G022501 Manihot esculenta HOM05D005095 ORTHO05D006156 8.9e-147 523.9 318 76.1
TWI74G0549 Tripterygium wilfordii HOM05D005095 ORTHO05D006156 2.0e-146 522.7 307 78.5
CSS0041742 Camellia sinensis var. sinensis HOM05D005095 ORTHO05D006156 3.4e-146 521.9 311 77.8
CANSAT51G0008 Cannabis sativa HOM05D005095 ORTHO05D006156 1.3e-145 520.0 308 77.6
CANSAT51G0010 Cannabis sativa HOM05D005095 ORTHO05D006156 1.3e-145 520.0 308 77.6
CANSAT51G0015 Cannabis sativa HOM05D005095 ORTHO05D006156 1.3e-145 520.0 308 77.6
Atru.chr8.1610 Acer truncatum HOM05D005095 ORTHO05D006156 1.1e-144 516.9 308 77.3
Rhsim03G0078800 Rhododendron simsii HOM05D005095 ORTHO05D006156 2.4e-144 515.8 314 77.4
Actinidia05448 Actinidia chinensis HOM05D005095 ORTHO05D006156 3.1e-144 515.4 312 77.6
Cpa.g.sc5.61 Carica papaya HOM05D005095 ORTHO05D006156 3.5e-143 511.9 318 73.9
TAR623G0504 Trochodendron aralioides HOM05D005095 ORTHO05D006156 1.3e-142 510.0 292 80.5
Ciclev10012289m.g Citrus clementina HOM05D005095 ORTHO05D006156 1.9e-141 506.1 304 77.3
Nn6g35006 Nelumbo nucifera HOM05D005095 ORTHO05D006156 2.5e-141 505.8 304 77.6
Peaxi162Scf00820g00056 Petunia axillaris HOM05D005095 ORTHO05D006156 4.3e-141 505.0 312 73.4
Sed0002679 Sechium edule HOM05D005095 ORTHO05D006156 4.3e-141 505.0 313 74.4
Nitab4.5_0009950g0030 Nicotiana tabacum HOM05D005095 ORTHO05D006156 9.5e-141 503.8 311 74.3
Lalb_Chr21g0315581 Lupinus albus HOM05D005095 ORTHO05D006156 2.1e-140 502.7 307 75.9
vmacro07384 Vaccinium macrocarpon HOM05D005095 ORTHO05D006156 4.7e-140 501.5 313 77.3
Glyma.U031320 Glycine max HOM05D005095 ORTHO05D006156 2.3e-139 499.2 313 75.1
CsaV3_3G036990 Cucumis sativus L. HOM05D005095 ORTHO05D006156 3.0e-139 498.8 301 74.4
Sopen09g003900 Solanum pennellii HOM05D005095 ORTHO05D006156 4.0e-139 498.4 309 72.5
PSO339G4586 Papaver somniferum HOM05D005095 ORTHO05D006156 6.8e-139 497.7 317 72.6
Potri.002G156500 Populus trichocarpa HOM05D005095 ORTHO05D006156 8.9e-139 497.3 307 74.3
MELO3C009446.2 Cucumis melo HOM05D005095 ORTHO05D006156 1.2e-138 496.9 301 74.8
PGR004G0044 Punica granatum HOM05D005095 ORTHO05D006156 2.0e-138 496.1 304 75.0
TPR.G5702 Trifolium pratense HOM05D005095 ORTHO05D006156 2.6e-138 495.7 313 72.8
PGSC0003DMG400002713 Solanum tuberosum HOM05D005095 ORTHO05D006156 3.4e-138 495.4 309 72.5
Lj2A132T56 Lonicera japonica HOM05D005095 ORTHO05D006156 4.4e-138 495.0 303 75.6
Lj5g0003292 Lotus japonicus HOM05D005095 ORTHO05D006156 4.4e-138 495.0 310 74.8
MD14G1018000 Malus domestica HOM05D005095 ORTHO05D006156 1.3e-137 493.4 339 69.0
PSO384G1693 Papaver somniferum HOM05D005095 ORTHO05D006156 1.3e-137 493.4 303 73.9
Medtr1g060860 Medicago truncatula HOM05D005095 ORTHO05D006156 6.4e-137 491.1 309 73.1
Oeu018347.1 Olea europaea HOM05D005095 ORTHO05D006156 8.3e-137 490.7 302 74.2
Thecc.05G083800 Theobroma cacao HOM05D005095 ORTHO05D006156 1.8e-136 489.6 308 74.0
ClCG10G019200 Citrullus lanatus HOM05D005095 ORTHO05D006156 3.2e-136 488.8 313 72.2
Manes.08G022601 Manihot esculenta HOM05D005095 ORTHO05D006156 4.1e-136 488.4 324 71.6
Ca_11632_v3 Cicer arietinum L. HOM05D005095 ORTHO05D006156 7.0e-136 487.6 307 73.3
Potri.002G156200 Populus trichocarpa HOM05D005095 ORTHO05D006156 1.6e-135 486.5 307 72.6
THA.LOC104816365 Tarenaya hassleriana HOM05D005095 ORTHO05D006156 1.6e-135 486.5 303 72.3
MSTRG.19241 Avicennia marina HOM05D005095 ORTHO05D006156 2.7e-135 485.7 312 71.5
DCAR_007746 Daucus carota HOM05D005095 ORTHO05D006156 2.7e-135 485.7 306 73.5
VMungo0720G2061 Vigna mungo HOM05D005095 ORTHO05D006156 2.7e-135 485.7 311 72.0
Aqoxy4G02848 Aquilegia oxysepala HOM05D005095 ORTHO05D006156 3.5e-135 485.3 301 74.1
Psat6g080360 Pisum sativum HOM05D005095 ORTHO05D006156 4.6e-135 485.0 306 73.2
CAN.G824.21 Capsicum annuum HOM05D005095 ORTHO05D006156 6.0e-135 484.6 309 71.2
RcHm_v2.0_Chr3g0472431 Rosa chinensis HOM05D005095 ORTHO05D006156 1.7e-134 483.0 307 72.3
TAR369G0658 Trochodendron aralioides HOM05D005095 ORTHO05D006156 2.3e-134 482.6 312 73.7
Sabra02G0124100 Salix brachista HOM05D005095 ORTHO05D006156 3.9e-134 481.9 332 67.8
FAN14G2314 Fragaria x ananassa HOM05D005095 ORTHO05D006156 8.6e-134 480.7 307 72.6
Phvul.007G222200 Phaseolus vulgaris HOM05D005095 ORTHO05D006156 8.6e-134 480.7 311 72.0
AL3G21250 Arabidopsis lyrata HOM05D005095 ORTHO05D006156 1.5e-133 479.9 307 70.0
Gohir.A04G065328 Gossypium hirsutum HOM05D005095 ORTHO05D006156 4.3e-133 478.4 308 71.4
AT3G09970 Arabidopsis thaliana HOM05D005095 ORTHO05D006156 1.6e-132 476.5 307 69.7
Gohir.D04G102800 Gossypium hirsutum HOM05D005095 ORTHO05D006156 1.6e-132 476.5 308 72.1
MBI01_g08270_MAGBIO Magnolia biondii HOM05D005095 ORTHO05D006156 1.6e-132 476.5 303 72.9
C05p58070 Brassica napus HOM05D005095 ORTHO05D006156 2.8e-132 475.7 307 70.7
Gorai.009G406100 Gossypium raimondii HOM05D005095 ORTHO05D006156 3.6e-132 475.3 308 71.8
arahy.Tifrunner.gnm1.ann1.133YU3 Arachis hypogaea HOM05D005095 ORTHO05D006156 4.7e-132 474.9 304 73.0
arahy.Tifrunner.gnm1.ann1.ARK388 Arachis hypogaea HOM05D005095 ORTHO05D006156 4.7e-132 474.9 304 73.0
COL.COLO4_29793 Corchorus olitorius HOM05D005095 ORTHO05D006156 4.7e-132 474.9 308 72.1
Thecc.05G084100 Theobroma cacao HOM05D005095 ORTHO05D006156 6.2e-132 474.6 308 71.8
Thhalv10021191m.g Eutrema salsugineum HOM05D005095 ORTHO05D006156 8.0e-132 474.2 307 68.1
Nitab4.5_0008581g0020 Nicotiana tabacum HOM05D005095 ORTHO05D006156 8.0e-132 474.2 311 71.7
Sp3g08310 Schrenkiella parvula HOM05D005095 ORTHO05D006156 1.1e-131 473.8 307 69.1
FAN09G4215 Fragaria x ananassa HOM05D005095 ORTHO05D006156 1.4e-131 473.4 307 72.0
SGA_v2.0_scaffold13G06769 Striga asiatica HOM05D005095 ORTHO05D006156 1.4e-131 473.4 310 70.6
CARHR084480 Cardamine hirsuta HOM05D005095 ORTHO05D006156 4.0e-131 471.9 302 68.9
Duzib093G0109 Durio zibethinus HOM05D005095 ORTHO05D006156 5.2e-131 471.5 301 73.4
ECA238G3195 Erigeron canadensis HOM05D005095 ORTHO05D006156 8.9e-131 470.7 310 70.0
Aa31LG3G2470 Aethionema arabicum HOM05D005095 ORTHO05D006156 2.0e-130 469.5 302 69.5
A05p39050 Brassica napus HOM05D005095 ORTHO05D006156 7.5e-130 467.6 307 69.4
BraA05t22697Z Brassica rapa HOM05D005095 ORTHO05D006156 7.5e-130 467.6 307 69.4
HanXRQChr14g0432521 Helianthus annuus HOM05D005095 ORTHO05D006156 1.3e-129 466.8 301 70.8
BolC5t34464H Brassica oleracea HOM05D005095 ORTHO05D006156 1.7e-129 466.5 307 69.7
RcHm_v2.0_Chr3g0472441 Rosa chinensis HOM05D005095 ORTHO05D006156 2.9e-129 465.7 307 70.0
Migut.J00973 Erythranthe guttata HOM05D005095 ORTHO05D006156 3.7e-129 465.3 306 69.9
Lsat_1_v5_gn_2_22640 Lactuca sativa HOM05D005095 ORTHO05D006156 3.7e-129 465.3 302 69.5
AUR62033539 Chenopodium quinoa HOM05D005095 ORTHO05D006156 6.4e-129 464.5 301 70.4
unitig_578.g15761 Utricularia gibba HOM05D000146 ORTHO05D006156 1.4e-128 463.4 305 70.2
SalBow3G2853 Salvia bowleyana HOM05D005095 ORTHO05D006156 4.1e-128 461.8 300 70.3
CARHR084470 Cardamine hirsuta HOM05D005095 ORTHO05D006156 5.4e-128 461.5 303 67.7
ATR0820G022 Amborella trichopoda HOM05D005095 ORTHO05D006156 2.0e-127 459.5 307 69.4
Eucgr.A01531 Eucalyptus grandis HOM05D005095 ORTHO05D006156 3.9e-126 455.3 303 69.6
Nitab4.5_0004686g0050 Nicotiana tabacum HOM05D005095 ORTHO05D006156 1.5e-125 453.4 311 68.5
Nitab4.5_0004686g0040 Nicotiana tabacum HOM05D005095 ORTHO05D006156 3.3e-125 452.2 355 62.0
AT3G09960 Arabidopsis thaliana HOM05D005095 ORTHO05D006156 1.6e-124 449.9 308 66.9
Gorai.009G405800 Gossypium raimondii HOM05D005095 ORTHO05D006156 8.9e-123 444.1 311 67.5
EL10Ac7g16967 Beta vulgaris HOM05D005095 ORTHO05D006156 4.4e-122 441.8 301 67.8
BcaC05g29724 Brassica carinata HOM05D005095 ORTHO05D006156 5.8e-122 441.4 307 65.8
Zm00001eb421860 Zea mays HOM05D005095 ORTHO05D006156 5.8e-122 441.4 308 66.6
DCAR_013371 Daucus carota HOM05D005095 ORTHO05D006156 1.9e-120 436.4 328 65.2
Os04g0409500 Oryza sativa ssp. japonica HOM05D005095 ORTHO05D006156 5.4e-120 434.9 301 64.8
C05p58080 Brassica napus HOM05D005095 ORTHO05D006156 7.1e-120 434.5 306 63.7
MELO3C009819.2 Cucumis melo HOM05D005095 ORTHO05D006156 1.1e-117 427.2 312 64.1
Carub.0003s0907 Capsella rubella HOM05D005095 ORTHO05D006156 9.5e-117 424.1 292 68.2
CsaV3_3G040830 Cucumis sativus L. HOM05D005095 ORTHO05D006156 1.4e-115 420.2 313 63.3
Ah.06g189990 Amaranthus hybridus HOM05D005095 ORTHO05D006156 1.5e-114 416.8 302 63.6
DCAR_013370 Daucus carota HOM05D005095 ORTHO05D006156 6.4e-113 411.4 301 65.1
Nn6g35008 Nelumbo nucifera HOM05D005095 ORTHO05D006156 8.4e-113 411.0 307 63.8
Sc02g0001070 Simmondsia chinensis HOM05D005095 ORTHO05D006156 2.7e-111 406.0 259 73.4
SEGI_28091 Sequoiadendron giganteum HOM05D005095 ORTHO05D006156 3.3e-109 399.1 304 62.8
DCAR_013372 Daucus carota HOM05D005095 ORTHO05D006156 6.2e-108 394.8 315 61.3
ECA238G1993 Erigeron canadensis HOM05D005095 ORTHO05D006156 1.5e-106 390.2 305 62.3
FvH4_6g18140 Fragaria vesca HOM05D005095 ORTHO05D006156 9.9e-106 387.5 250 71.2
Ah.06g189980 Amaranthus hybridus HOM05D005095 ORTHO05D006156 4.0e-99 365.5 301 57.5
AagrBONN_evm.TU.Sc2ySwM_117.2042 Anthoceros agrestis HOM05D005095 ORTHO05D006156 2.6e-98 362.8 301 56.8
BcaC05g29723 Brassica carinata HOM05D005095 ORTHO05D006156 2.2e-97 359.8 307 54.7
BolC5t34465H Brassica oleracea HOM05D005095 ORTHO05D006156 1.9e-96 356.7 249 62.7
Pp3c12_22780 Physcomitrium patens HOM05D005095 ORTHO05D006156 1.8e-94 350.1 302 53.0
Mapoly0100s0026 Marchantia polymorpha HOM05D005095 ORTHO05D006156 3.9e-94 349.0 302 55.6
AL3G21240 Arabidopsis lyrata HOM05D005095 ORTHO05D006156 1.4e-91 340.5 312 54.2
Sed0010579 Sechium edule HOM05D005095 ORTHO05D006156 9.0e-91 337.8 249 60.2
Gohir.D04G102500 Gossypium hirsutum HOM05D005095 ORTHO05D006156 1.7e-89 333.6 234 68.8
Duzib093G0628 Durio zibethinus HOM05D005095 ORTHO05D006156 6.4e-89 331.6 302 59.3
SMO352G0026 Selaginella moellendorffii HOM05D005095 ORTHO05D006156 7.1e-88 328.2 310 51.6
CBR_g20302 Chara braunii HOM05D005095 ORTHO05D006156 1.2e-87 327.4 314 48.1
Solyc09g009170.4 Solanum lycopersicum HOM05D005095 ORTHO05D006156 2.3e-86 323.2 200 72.5
GSVIVG01033803001 Vitis vinifera HOM05D005095 ORTHO05D006156 3.7e-84 315.8 185 79.5
Gohir.A04G062650 Gossypium hirsutum HOM05D005095 ORTHO05D006156 4.6e-79 298.9 221 61.5
Cc06_g05420 Coffea canephora HOM05D005095 ORTHO05D006156 7.9e-79 298.1 182 74.7
CDE02G4719 Ceratophyllum demersum HOM05D005095 ORTHO05D006156 5.7e-77 292.0 177 74.6
Haze_19563 Corylus avellana HOM05D000103 ORTHO05D000049 3.0e-70 269.6 144 83.3
Medtr1g060850 Medicago truncatula HOM05D005095 ORTHO05D006156 5.3e-67 258.8 166 69.3
CAN.G397.3 Capsicum annuum HOM05D005095 ORTHO05D006156 1.7e-65 253.8 188 63.8
BcaC05g29512 Brassica carinata HOM05D005095 ORTHO05D006156 4.4e-61 239.2 166 64.5
MD14G1017800 Malus domestica HOM05D005095 ORTHO05D006156 5.9e-58 228.8 143 73.4
Glyma.10G067302 Glycine max HOM05D005095 ORTHO05D006156 1.4e-56 224.2 135 77.8
Sabra02G0123600 Salix brachista HOM05D005095 ORTHO05D006156 6.5e-49 198.7 172 58.1
MCO16G241 Micromonas commoda HOM05D005095 ORTHO05D006156 1.3e-44 184.5 282 41.1
AL7G30480 Arabidopsis lyrata HOM05D005095 ORTHO05D006156 1.0e-41 174.9 116 63.8
HPP92_007823 Vanilla planifolia HOM05D005095 ORTHO05D006156 7.2e-40 168.7 125 63.2
Hund04015 Selenicereus undatus HOM05D005095 ORTHO05D006156 2.1e-39 167.2 113 67.3
Zm00001eb312570 Zea mays HOM05D005095 ORTHO05D006156 8.8e-38 161.8 123 59.3
BcaB02g09662 Brassica carinata HOM05D005095 ORTHO05D006156 7.7e-34 148.7 159 48.4
Nn6g35009 Nelumbo nucifera HOM05D005095 ORTHO05D006156 5.0e-33 146.0 116 64.7
VMungo0720G1002 Vigna mungo HOM05D005095 ORTHO05D006156 2.9e-25 120.2 91 59.3
TAR628G0764 Trochodendron aralioides HOM05D005095 ORTHO05D006156 3.3e-24 116.7 73 71.2
Prupe.3G199100 Prunus persica HOM05D005095 ORTHO05D006156 3.7e-20 103.2 61 78.7
Zm00001eb198060 Zea mays HOM05D005095 ORTHO05D006156 7.0e-19 99.0 59 72.9
MD04G1094600 Malus domestica HOM05D005095 ORTHO05D245281 2.0e-13 80.9 69 58.0
Sabra14G0058200 Salix brachista HOM05D005095 ORTHO05D006156 4.9e-12 76.3 101 49.5
Cfa016564 Carpinus fangiana HOM05D000103 ORTHO05D000049 1.1e-11 75.1 232 34.1
Pp3c4_390 Physcomitrium patens HOM05D005095 ORTHO05D006156 3.1e-06 57.0 48 43.8


User provided reference genes

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