Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016525 Carpinus fangiana HOM05D006043 ORTHO05D007309 3.8e-79 298.1 153 100.0
Haze_19524 Corylus avellana HOM05D006043 ORTHO05D007309 5.7e-67 257.7 155 89.7
Eucgr.K02399 Eucalyptus grandis HOM05D006043 ORTHO05D007309 7.0e-57 224.2 152 73.0
QL07p040748 Quercus lobata HOM05D006043 ORTHO05D007309 9.1e-57 223.8 152 78.9
Manes.08G019800 Manihot esculenta HOM05D006043 ORTHO05D007309 1.6e-56 223.0 153 74.5
Eucgr.K02384 Eucalyptus grandis HOM05D006043 ORTHO05D007309 3.5e-56 221.9 152 72.4
Eucgr.K02410 Eucalyptus grandis HOM05D006043 ORTHO05D007309 5.9e-56 221.1 152 71.7
Eucgr.K02389 Eucalyptus grandis HOM05D006043 ORTHO05D007309 7.7e-56 220.7 152 71.7
CiPaw.10G004600 Carya illinoinensis HOM05D006043 ORTHO05D007309 1.5e-54 216.5 156 75.0
Atru.chr8.1654 Acer truncatum HOM05D006043 ORTHO05D007309 1.6e-53 213.0 152 73.7
Potri.013G014300 Populus trichocarpa HOM05D006043 ORTHO05D007309 6.8e-52 207.6 155 69.0
Cpa.g.sc5.89 Carica papaya HOM05D006043 ORTHO05D007309 1.5e-51 206.5 152 73.0
Cc00_g32800 Coffea canephora HOM05D006043 ORTHO05D007309 4.1e-49 198.4 151 70.9
Prupe.7G119300 Prunus persica HOM05D006043 ORTHO05D007309 1.2e-48 196.8 150 70.7
CsaV3_3G036730 Cucumis sativus L. HOM05D006043 ORTHO05D007309 3.5e-48 195.3 150 69.3
Duzib106G1072 Durio zibethinus HOM05D006043 ORTHO05D007309 1.3e-47 193.4 148 68.9
Rhsim06G0171100 Rhododendron simsii HOM05D006043 ORTHO05D007309 1.3e-47 193.4 155 66.5
CANSAT80G1206 Cannabis sativa HOM05D006043 ORTHO05D007309 2.2e-47 192.6 152 68.4
Lalb_Chr20g0112261 Lupinus albus HOM05D006043 ORTHO05D007309 6.5e-47 191.0 152 69.1
FvH4_6g17700 Fragaria vesca HOM05D006043 ORTHO05D007309 1.1e-46 190.3 153 66.7
ClCG10G019450 Citrullus lanatus HOM05D006043 ORTHO05D007309 1.5e-46 189.9 150 68.0
MELO3C009427.2 Cucumis melo HOM05D006043 ORTHO05D007309 1.5e-46 189.9 150 67.3
MD14G1014200 Malus domestica HOM05D006043 ORTHO05D007309 2.5e-46 189.1 148 66.2
COL.COLO4_29832 Corchorus olitorius HOM05D006043 ORTHO05D007309 5.5e-46 188.0 154 66.9
MD12G1016000 Malus domestica HOM05D006043 ORTHO05D007309 5.5e-46 188.0 148 67.6
Ciclev10013017m.g Citrus clementina HOM05D006043 ORTHO05D007309 7.2e-46 187.6 154 67.5
FAN02G0054 Fragaria x ananassa HOM05D006043 ORTHO05D007309 7.2e-46 187.6 153 66.7
Gohir.A04G066428 Gossypium hirsutum HOM05D006043 ORTHO05D007309 1.2e-45 186.8 148 68.2
Gorai.006G158600 Gossypium raimondii HOM05D006043 ORTHO05D007309 1.2e-45 186.8 151 66.2
RcHm_v2.0_Chr3g0471911 Rosa chinensis HOM05D006043 ORTHO05D007309 1.2e-45 186.8 152 65.8
Gohir.D04G105000 Gossypium hirsutum HOM05D006043 ORTHO05D007309 2.7e-45 185.7 148 68.2
Gorai.009G408700 Gossypium raimondii HOM05D006043 ORTHO05D007309 2.7e-45 185.7 148 68.2
CSS0040940 Camellia sinensis var. sinensis HOM05D006043 ORTHO05D007309 4.7e-45 184.9 157 64.3
Gohir.D09G138000 Gossypium hirsutum HOM05D006043 ORTHO05D007309 8.0e-45 184.1 151 65.6
Duzib093G0521 Durio zibethinus HOM05D006043 ORTHO05D007309 1.4e-44 183.3 150 69.3
vmacro12136 Vaccinium macrocarpon HOM05D006043 ORTHO05D007309 4.0e-44 181.8 153 64.7
VMungo1383G3657 Vigna mungo HOM05D006043 ORTHO05D007309 4.0e-44 181.8 154 65.6
Eucgr.A01560 Eucalyptus grandis HOM05D006043 ORTHO05D007309 1.5e-43 179.9 119 76.5
Oeu040545.1 Olea europaea HOM05D006043 ORTHO05D007309 4.4e-43 178.3 147 66.0
Ca_08959_v3 Cicer arietinum L. HOM05D006043 ORTHO05D007309 1.7e-42 176.4 152 62.5
Cc00_g05260 Coffea canephora HOM05D006043 ORTHO05D007309 1.7e-42 176.4 146 66.4
TWI53G1797 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 3.1e-41 172.2 109 76.1
Nitab4.5_0010125g0030 Nicotiana tabacum HOM05D006043 ORTHO05D007309 4.1e-41 171.8 152 61.8
Gohir.A09G136312 Gossypium hirsutum HOM05D006043 ORTHO05D007309 1.2e-40 170.2 161 59.6
Phvul.001G185700 Phaseolus vulgaris HOM05D006043 ORTHO05D007309 1.2e-40 170.2 152 63.2
Glyma.03G190100 Glycine max HOM05D006043 ORTHO05D007309 1.6e-40 169.9 154 63.6
Lj1g0027910 Lotus japonicus HOM05D006043 ORTHO05D007309 1.6e-40 169.9 154 63.6
Peaxi162Scf00412g00073 Petunia axillaris HOM05D006043 ORTHO05D007309 2.7e-40 169.1 150 62.0
Peaxi162Scf00412g00063 Petunia axillaris HOM05D006043 ORTHO05D007309 4.5e-40 168.3 152 63.2
PGR004G1627 Punica granatum HOM05D006043 ORTHO05D007309 4.5e-40 168.3 132 65.9
Aqoxy1G00961 Aquilegia oxysepala HOM05D006043 ORTHO05D007309 7.7e-40 167.5 152 62.5
Dinv21268 Davidia involucrata HOM05D006043 ORTHO05D007309 7.7e-40 167.5 147 66.0
Glyma.19G190400 Glycine max HOM05D006043 ORTHO05D007309 1.3e-39 166.8 154 61.0
Sopen09g003740 Solanum pennellii HOM05D006043 ORTHO05D007309 1.7e-39 166.4 147 63.9
Cc06_g05110 Coffea canephora HOM05D006043 ORTHO05D007309 2.3e-39 166.0 152 61.2
HanXRQChr09g0259401 Helianthus annuus HOM05D006043 ORTHO05D007309 2.3e-39 166.0 148 62.8
Medtr7g103520 Medicago truncatula HOM05D006043 ORTHO05D007309 1.5e-38 163.3 152 60.5
Nn6g35076 Nelumbo nucifera HOM05D006043 ORTHO05D007309 1.9e-38 162.9 150 60.7
Solyc09g008980.2 Solanum lycopersicum HOM05D006043 ORTHO05D007309 1.9e-38 162.9 147 62.6
TPR.G7024 Trifolium pratense HOM05D006043 ORTHO05D007309 2.5e-38 162.5 153 58.8
Sc07g0005350 Simmondsia chinensis HOM05D006043 ORTHO05D007309 4.3e-38 161.8 152 62.5
MBI01_g32535_MAGBIO Magnolia biondii HOM05D006043 ORTHO05D007309 2.1e-37 159.5 152 63.2
Sed0027852 Sechium edule HOM05D006043 ORTHO05D007309 2.1e-37 159.5 150 59.3
Nn2g13971 Nelumbo nucifera HOM05D006043 ORTHO05D007309 3.6e-37 158.7 120 70.8
Sp3g08330 Schrenkiella parvula HOM05D006043 ORTHO05D007309 6.1e-37 157.9 147 59.2
Psat3g036320 Pisum sativum HOM05D006043 ORTHO05D007309 1.4e-36 156.8 110 70.9
AL3G21330 Arabidopsis lyrata HOM05D006043 ORTHO05D007309 5.2e-36 154.8 147 58.5
PSO384G2483 Papaver somniferum HOM05D006043 ORTHO05D007309 3.4e-35 152.1 160 58.1
CARHR084520 Cardamine hirsuta HOM05D006043 ORTHO05D007309 5.7e-35 151.4 147 57.8
Nitab4.5_0010125g0040 Nicotiana tabacum HOM05D006043 ORTHO05D007309 5.7e-35 151.4 126 61.9
AT3G10020 Arabidopsis thaliana HOM05D006043 ORTHO05D007309 9.8e-35 150.6 147 57.8
Thhalv10021699m.g Eutrema salsugineum HOM05D006043 ORTHO05D007309 2.9e-34 149.1 147 56.5
BraA05t22694Z Brassica rapa HOM05D006043 ORTHO05D007309 6.4e-34 147.9 147 57.1
Oeu030483.1 Olea europaea HOM05D006043 ORTHO05D007309 6.4e-34 147.9 147 59.2
BcaB03g11578 Brassica carinata HOM05D006043 ORTHO05D007309 8.3e-34 147.5 147 57.1
A05p39030 Brassica napus HOM05D006043 ORTHO05D007309 8.3e-34 147.5 147 55.8
C05p58050 Brassica napus HOM05D002004 ORTHO05D002089 1.1e-33 147.1 147 57.1
BolC5t34462H Brassica oleracea HOM05D006043 ORTHO05D007309 1.1e-33 147.1 147 57.1
EL10Ac7g17005 Beta vulgaris HOM05D006043 ORTHO05D007309 1.8e-33 146.4 152 53.9
Ah.08g211020 Amaranthus hybridus HOM05D006043 ORTHO05D007309 3.2e-33 145.6 151 55.0
Carub.0003s0912 Capsella rubella HOM05D006043 ORTHO05D007309 4.1e-33 145.2 147 57.1
Aa31LG3G2550 Aethionema arabicum HOM05D006043 ORTHO05D007309 5.9e-32 141.4 147 55.1
TWI13G0012 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 5.9e-32 141.4 154 53.2
TWI74G0769 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 5.9e-32 141.4 154 53.2
BcaC01g04256 Brassica carinata HOM05D006043 ORTHO05D007309 7.8e-32 141.0 147 57.1
BcaC05g29726 Brassica carinata HOM05D006043 ORTHO05D007309 1.0e-31 140.6 150 54.0
PGSC0003DMG400002723 Solanum tuberosum HOM05D006043 ORTHO05D007309 1.7e-31 139.8 147 57.1
Nitab4.5_0001922g0090 Nicotiana tabacum HOM05D006043 ORTHO05D007309 2.3e-31 139.4 148 56.8
C03p43400 Brassica napus HOM05D006043 ORTHO05D007309 3.0e-31 139.0 147 56.5
BraA03t12747Z Brassica rapa HOM05D006043 ORTHO05D007309 3.0e-31 139.0 147 57.1
A03p35730 Brassica napus HOM05D006043 ORTHO05D007309 1.1e-30 137.1 143 58.0
PGSC0003DMG400002724 Solanum tuberosum HOM05D006043 ORTHO05D007309 1.1e-30 137.1 134 56.0
Lsat_1_v5_gn_2_22321 Lactuca sativa HOM05D006043 ORTHO05D007309 3.3e-30 135.6 143 55.9
BolC3t16611H Brassica oleracea HOM05D006043 ORTHO05D007309 2.8e-29 132.5 147 54.4
CAN.G824.34 Capsicum annuum HOM05D006043 ORTHO05D007309 2.8e-29 132.5 121 57.9
Lj2P127T74 Lonicera japonica HOM05D006043 ORTHO05D007309 4.7e-29 131.7 138 58.0
SGA_v2.0_scaffold40G15419 Striga asiatica HOM05D006043 ORTHO05D007309 4.7e-29 131.7 149 54.4
Thecc.05G079900 Theobroma cacao HOM05D006043 ORTHO05D007309 1.4e-28 130.2 150 53.3
Aqoxy2G01470 Aquilegia oxysepala HOM05D006043 ORTHO05D007309 4.4e-27 125.2 129 57.4
SalBow3G1044 Salvia bowleyana HOM05D006043 ORTHO05D007309 4.4e-27 125.2 147 49.7
DCAR_009167 Daucus carota HOM05D006043 ORTHO05D007309 5.8e-27 124.8 146 52.7
THA.LOC104816380 Tarenaya hassleriana HOM05D006043 ORTHO05D007309 2.9e-26 122.5 130 52.3
Os12g0147200 Oryza sativa ssp. japonica HOM05D006043 ORTHO05D007309 6.4e-26 121.3 142 52.8
Zm00001eb406490 Zea mays HOM05D006043 ORTHO05D007309 6.4e-26 121.3 141 51.8
TAR334G0001 Trochodendron aralioides HOM05D006043 ORTHO05D007309 8.3e-26 120.9 83 74.7
TAR369G1076 Trochodendron aralioides HOM05D006043 ORTHO05D007309 8.3e-26 120.9 83 74.7
BolC8t51238H Brassica oleracea HOM05D006043 ORTHO05D007309 2.4e-25 119.4 137 54.7
Prupe.7G091800 Prunus persica HOM05D006043 ORTHO05D007309 7.0e-25 117.9 84 73.8
ECA126G0006 Erigeron canadensis HOM05D006043 ORTHO05D007309 9.2e-25 117.5 105 61.0
Os11g0149200 Oryza sativa ssp. japonica HOM05D006043 ORTHO05D007309 2.7e-24 115.9 129 50.4
HPP92_021571 Vanilla planifolia HOM05D006043 ORTHO05D007309 3.9e-23 112.1 137 50.4
Solyc09g008970.1 Solanum lycopersicum HOM05D006043 ORTHO05D007309 1.9e-22 109.8 135 49.6
Sopen09g003730 Solanum pennellii HOM05D006043 ORTHO05D007309 4.7e-21 105.1 135 48.9
Lj4P368T6 Lonicera japonica HOM05D006043 ORTHO05D007309 3.4e-19 99.0 74 71.6
C08p36560 Brassica napus HOM05D006043 ORTHO05D007309 1.1e-17 94.0 103 56.3
BcaC03g16179 Brassica carinata HOM05D006043 ORTHO05D007309 3.5e-16 89.0 103 55.3
AUR62033593 Chenopodium quinoa HOM05D006043 ORTHO05D007309 4.6e-16 88.6 139 45.3
C02p39530 Brassica napus HOM05D006043 ORTHO05D007309 1.0e-15 87.4 103 54.4
BolC2t09966H Brassica oleracea HOM05D006043 ORTHO05D007309 1.0e-15 87.4 103 54.4
SEGI_20897 Sequoiadendron giganteum HOM05D006043 ORTHO05D007309 3.3e-14 82.4 108 47.2
Nn1g08859 Nelumbo nucifera HOM05D006043 ORTHO05D007309 4.3e-14 82.0 64 68.8
THA.LOC104823222 Tarenaya hassleriana HOM05D006043 ORTHO05D007309 1.2e-13 80.5 72 55.6
SMO347G0034 Selaginella moellendorffii HOM05D006043 ORTHO05D007309 1.6e-13 80.1 106 46.2
Mapoly0058s0037 Marchantia polymorpha HOM05D006043 ORTHO05D007309 2.9e-10 69.3 104 43.3
AUR62037886 Chenopodium quinoa HOM05D006043 ORTHO05D007309 2.1e-08 63.2 68 47.1
SMO358G0245 Selaginella moellendorffii HOM05D006043 ORTHO05D007309 2.3e-07 59.7 71 52.1


User provided reference genes

Program Settings