Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016468 Carpinus fangiana HOM05D005722 ORTHO05D007934 1.2e-239 832.8 418 100.0
Cfa016476 Carpinus fangiana HOM05D005722 ORTHO05D007934 1.2e-223 779.6 447 90.4
CiPaw.09G004900 Carya illinoinensis HOM05D005722 ORTHO05D007934 6.9e-208 727.2 447 83.0
QL07p041452 Quercus lobata HOM05D005722 ORTHO05D007934 1.8e-203 712.6 444 81.1
Duzib128G0866 Durio zibethinus HOM05D005722 ORTHO05D007934 2.2e-198 695.7 442 79.9
COL.COLO4_22250 Corchorus olitorius HOM05D005722 ORTHO05D007934 1.4e-197 693.0 445 79.3
Sabra06G0094100 Salix brachista HOM05D005722 ORTHO05D007934 5.5e-197 691.0 444 80.0
Potri.006G119500 Populus trichocarpa HOM05D005722 ORTHO05D007934 6.1e-196 687.6 445 79.6
Prupe.7G123300 Prunus persica HOM05D005722 ORTHO05D007934 3.0e-195 685.3 447 77.4
Hma1.2p1_0547F.1_g176330 Hydrangea macrophylla HOM05D005722 ORTHO05D007934 1.1e-194 683.3 444 77.5
Manes.09G048478 Manihot esculenta HOM05D005722 ORTHO05D007934 5.7e-194 681.0 447 77.4
TAR623G1222 Trochodendron aralioides HOM05D005722 ORTHO05D007934 7.4e-194 680.6 445 78.0
FAN05G4610 Fragaria x ananassa HOM05D005722 ORTHO05D007934 1.3e-193 679.9 448 77.5
Atru.chr8.1708 Acer truncatum HOM05D005722 ORTHO05D007934 1.7e-193 679.5 443 77.4
FvH4_6g17170 Fragaria vesca HOM05D005722 ORTHO05D007934 2.2e-193 679.1 448 77.5
FAN05G1451 Fragaria x ananassa HOM05D005722 ORTHO05D007934 2.2e-193 679.1 448 77.5
Gohir.A09G143300 Gossypium hirsutum HOM05D005722 ORTHO05D007934 4.5e-191 671.4 444 77.3
Peaxi162Scf00138g00041 Petunia axillaris HOM05D005722 ORTHO05D007934 4.5e-191 671.4 444 77.3
Thecc.05G075200 Theobroma cacao HOM05D005722 ORTHO05D007934 5.9e-191 671.0 445 76.4
Gorai.006G160000 Gossypium raimondii HOM05D005722 ORTHO05D007934 1.3e-190 669.8 444 77.0
RcHm_v2.0_Chr3g0471261 Rosa chinensis HOM05D005722 ORTHO05D007934 1.7e-190 669.5 448 76.6
FAN14G5091 Fragaria x ananassa HOM05D005722 ORTHO05D007934 2.9e-190 668.7 442 77.4
Cpa.g.sc5.129 Carica papaya HOM05D005722 ORTHO05D007934 1.9e-189 666.0 445 75.1
MD12G1103200 Malus domestica HOM05D005722 ORTHO05D007934 1.6e-188 662.9 447 75.4
Haze_19473 Corylus avellana HOM05D005722 ORTHO05D007934 4.7e-188 661.4 391 88.0
CSS0018899 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 6.1e-188 661.0 445 74.8
CSS0022139 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 6.1e-188 661.0 445 74.8
TWI74G0410 Tripterygium wilfordii HOM05D005722 ORTHO05D007934 3.0e-187 658.7 446 74.4
Lj1g0006800 Lotus japonicus HOM05D005722 ORTHO05D007934 8.8e-187 657.1 442 75.3
Rhsim03G0086400 Rhododendron simsii HOM05D005722 ORTHO05D007934 8.8e-187 657.1 443 76.3
Cc06_g04740 Coffea canephora HOM05D005722 ORTHO05D007934 1.3e-185 653.3 447 73.8
Ciclev10011424m.g Citrus clementina HOM05D005722 ORTHO05D007934 6.3e-185 651.0 446 76.0
vmacro23004 Vaccinium macrocarpon HOM05D005722 ORTHO05D007934 1.1e-184 650.2 446 75.1
MSTRG.19206 Avicennia marina HOM05D005722 ORTHO05D007934 3.1e-184 648.7 445 73.3
Migut.J00472 Erythranthe guttata HOM05D005722 ORTHO05D007934 4.5e-183 644.8 445 72.4
Nn2g13890 Nelumbo nucifera HOM05D005722 ORTHO05D007934 1.0e-182 643.7 444 73.4
CANSAT56G0690 Cannabis sativa HOM05D005722 ORTHO05D007934 1.3e-182 643.3 440 74.5
Dinv35829 Davidia involucrata HOM05D005722 ORTHO05D007934 2.2e-182 642.5 418 78.7
Nitab4.5_0004731g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 3.8e-182 641.7 447 74.9
Ah.08g211270 Amaranthus hybridus HOM05D005722 ORTHO05D007934 1.5e-181 639.8 446 74.2
Aqoxy1G01041 Aquilegia oxysepala HOM05D005722 ORTHO05D007934 1.5e-181 639.8 444 73.4
AUR62026979 Chenopodium quinoa HOM05D005722 ORTHO05D007934 4.2e-181 638.3 439 74.3
PSO063G5110 Papaver somniferum HOM05D005722 ORTHO05D007934 5.5e-181 637.9 444 72.3
AUR62042706 Chenopodium quinoa HOM05D005722 ORTHO05D007934 7.2e-181 637.5 439 74.0
PGSC0003DMG400003879 Solanum tuberosum HOM05D005722 ORTHO05D007934 1.2e-180 636.7 444 74.1
PSO339G6299 Papaver somniferum HOM05D005722 ORTHO05D007934 2.1e-180 636.0 444 72.7
CAN.G1038.3 Capsicum annuum HOM05D005722 ORTHO05D007934 2.7e-180 635.6 447 73.8
EL10Ac7g16706 Beta vulgaris HOM05D005722 ORTHO05D007934 3.0e-179 632.1 442 73.5
Sopen09g003380 Solanum pennellii HOM05D005722 ORTHO05D007934 5.2e-179 631.3 444 73.2
Lalb_Chr02g0155431 Lupinus albus HOM05D005722 ORTHO05D007934 8.8e-179 630.6 445 72.6
TPR.G31667 Trifolium pratense HOM05D005722 ORTHO05D007934 1.2e-178 630.2 448 72.5
Lalb_Chr25g0288811 Lupinus albus HOM05D005722 ORTHO05D007934 1.5e-178 629.8 446 73.5
Lj5g0013810 Lotus japonicus HOM05D005722 ORTHO05D007934 2.0e-178 629.4 447 70.9
Glyma.13G147700 Glycine max HOM05D005722 ORTHO05D007934 4.4e-178 628.2 447 71.4
Phvul.007G226300 Phaseolus vulgaris HOM05D005722 ORTHO05D007934 4.4e-178 628.2 447 71.6
VMungo0720G2103 Vigna mungo HOM05D005722 ORTHO05D007934 6.3e-177 624.4 447 70.2
DCAR_015016 Daucus carota HOM05D005722 ORTHO05D007934 1.1e-176 623.6 436 72.7
Ca_04564_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 1.4e-176 623.2 448 71.0
Glyma.10G063100 Glycine max HOM05D005722 ORTHO05D007934 2.4e-176 622.5 448 70.8
PGR004G2571 Punica granatum HOM05D005722 ORTHO05D007934 1.2e-175 620.2 445 73.0
MBI18_g39612_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 3.8e-174 615.1 444 70.0
Medtr1g062130 Medicago truncatula HOM05D005722 ORTHO05D007934 5.0e-174 614.8 448 69.4
Medtr7g102810 Medicago truncatula HOM05D005722 ORTHO05D007934 1.5e-173 613.2 431 73.1
Gohir.D09G139600 Gossypium hirsutum HOM05D005722 ORTHO05D007934 4.2e-173 611.7 433 72.1
Gorai.006G160100 Gossypium raimondii HOM05D005722 ORTHO05D007934 4.2e-173 611.7 433 72.1
Psat3g038760 Pisum sativum HOM05D005722 ORTHO05D007934 4.2e-173 611.7 431 71.7
THA.LOC104816667 Tarenaya hassleriana HOM05D005722 ORTHO05D007934 3.6e-172 608.6 423 72.6
arahy.Tifrunner.gnm1.ann1.D7QF3J Arachis hypogaea HOM05D005722 ORTHO05D007934 1.8e-171 606.3 449 69.3
arahy.Tifrunner.gnm1.ann1.P0W3IN Arachis hypogaea HOM05D005722 ORTHO05D007934 1.8e-171 606.3 449 69.3
Solyc09g008550.4 Solanum lycopersicum HOM05D005722 ORTHO05D007934 4.0e-171 605.1 416 73.6
Carub.0006s0238 Capsella rubella HOM05D005722 ORTHO05D007934 6.8e-171 604.4 443 70.0
ClCG10G019670 Citrullus lanatus HOM05D005722 ORTHO05D007934 8.8e-171 604.0 442 68.3
Lsat_1_v5_gn_2_20401 Lactuca sativa HOM05D005722 ORTHO05D007934 1.2e-170 603.6 447 69.8
Gohir.A09G143500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 1.5e-170 603.2 428 72.7
SalBow3G1081 Salvia bowleyana HOM05D005722 ORTHO05D007934 5.7e-170 601.3 445 68.1
CARHR209770 Cardamine hirsuta HOM05D005722 ORTHO05D007934 9.8e-170 600.5 443 69.5
Thhalv10015725m.g Eutrema salsugineum HOM05D005722 ORTHO05D007934 9.8e-170 600.5 433 71.1
SGA_v2.0_scaffold75G24819 Striga asiatica HOM05D005722 ORTHO05D007934 9.8e-170 600.5 443 68.6
C03p01590 Brassica napus HOM05D005722 ORTHO05D007934 1.3e-169 600.1 436 71.3
SalBow3G1392 Salvia bowleyana HOM05D005722 ORTHO05D007934 1.3e-169 600.1 445 67.9
Sc20g0005780 Simmondsia chinensis HOM05D005722 ORTHO05D007934 1.3e-169 600.1 445 69.7
A03p01230 Brassica napus HOM05D005722 ORTHO05D007934 1.7e-169 599.7 436 71.3
Aa31LG1G21640 Aethionema arabicum HOM05D005722 ORTHO05D007934 2.2e-169 599.4 444 70.0
BolC3t12711H Brassica oleracea HOM05D005722 ORTHO05D007934 2.2e-169 599.4 436 71.3
BraA03t09503Z Brassica rapa HOM05D005722 ORTHO05D007934 2.2e-169 599.4 436 71.3
TPR.G22453 Trifolium pratense HOM05D005722 ORTHO05D007934 2.2e-169 599.4 448 68.5
Sp6g39190 Schrenkiella parvula HOM05D005722 ORTHO05D007934 8.3e-169 597.4 425 71.8
MELO3C009405.2 Cucumis melo HOM05D005722 ORTHO05D007934 1.1e-168 597.0 442 68.3
AT5G03555 Arabidopsis thaliana HOM05D005722 ORTHO05D007934 1.4e-168 596.7 436 69.5
Psat6g077240 Pisum sativum HOM05D005722 ORTHO05D007934 4.1e-168 595.1 448 67.4
AL6G13040 Arabidopsis lyrata HOM05D005722 ORTHO05D007934 2.0e-167 592.8 436 69.0
FAN02G1363 Fragaria x ananassa HOM05D005722 ORTHO05D007934 3.5e-167 592.0 448 70.3
Gohir.D09G139500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 4.5e-167 591.7 393 77.1
HanXRQChr14g0432851 Helianthus annuus HOM05D005722 ORTHO05D007934 4.5e-167 591.7 428 70.3
GSVIVG01033705001 Vitis vinifera HOM05D005722 ORTHO05D007934 1.3e-166 590.1 439 69.7
ECA238G3369 Erigeron canadensis HOM05D005722 ORTHO05D007934 6.6e-166 587.8 426 70.2
unitig_578.g15784 Utricularia gibba HOM05D005722 ORTHO05D007934 2.1e-164 582.8 437 67.7
CsaV3_3G036500 Cucumis sativus L. HOM05D005722 ORTHO05D007934 1.0e-163 580.5 442 66.7
Sed0005717 Sechium edule HOM05D005722 ORTHO05D007934 4.4e-162 575.1 428 68.0
ATR0009G019 Amborella trichopoda HOM05D005722 ORTHO05D007934 1.6e-159 566.6 441 65.8
Ca_30109_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 3.5e-159 565.5 389 72.8
Nitab4.5_0003906g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 2.5e-157 559.3 447 68.0
MBI18_g19054_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 3.7e-153 545.4 447 62.4
MBI18_g31623_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 6.0e-151 538.1 447 62.6
MBI18_g39457_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 6.0e-151 538.1 447 62.6
Eucgr.A01597 Eucalyptus grandis HOM05D005722 ORTHO05D007934 3.9e-150 535.4 438 64.8
SEGI_35570 Sequoiadendron giganteum HOM05D005722 ORTHO05D007934 1.2e-148 530.4 435 60.0
Os02g0666700 Oryza sativa ssp. japonica HOM05D005722 ORTHO05D007934 7.3e-141 504.6 426 59.9
Cc06_g04750 Coffea canephora HOM05D005722 ORTHO05D007934 9.5e-141 504.2 437 60.9
HPP92_025568 Vanilla planifolia HOM05D005722 ORTHO05D007934 1.6e-140 503.4 431 60.6
Zm00001eb249990 Zea mays HOM05D005722 ORTHO05D007934 4.4e-138 495.4 435 57.2
Mapoly0002s0120 Marchantia polymorpha HOM05D005722 ORTHO05D007934 9.6e-133 477.6 432 53.7
CDE08G1312 Ceratophyllum demersum HOM05D005722 ORTHO05D007934 1.1e-131 474.2 354 68.6
Pp3c1_30640 Physcomitrium patens HOM05D005722 ORTHO05D007934 1.6e-127 460.3 432 55.1
Pp3c14_20990 Physcomitrium patens HOM05D005722 ORTHO05D007934 1.0e-126 457.6 431 54.5
SMO115G0026 Selaginella moellendorffii HOM05D005722 ORTHO05D007934 1.0e-126 457.6 437 55.8
Actinidia28931 Actinidia chinensis HOM05D005722 ORTHO05D007934 1.3e-126 457.2 372 67.5
Lj2P123T37 Lonicera japonica HOM05D005722 ORTHO05D007934 3.5e-119 432.6 320 71.9
Cre09.g389356 Chlamydomonas reinhardtii HOM05D005722 ORTHO05D007934 6.9e-115 418.3 432 49.5
Sc20g0005800 Simmondsia chinensis HOM05D005722 ORTHO05D007934 3.5e-111 406.0 330 65.8
Actinidia26637 Actinidia chinensis HOM05D005722 ORTHO05D007934 3.3e-109 399.4 383 59.3
MCO11G702 Micromonas commoda HOM05D005722 ORTHO05D007934 5.5e-96 355.5 448 44.9
PRCOL_00006021 Prasinoderma coloniale HOM05D005722 ORTHO05D007934 1.5e-90 337.4 444 43.5
Haze_19472 Corylus avellana HOM05D005722 ORTHO05D007934 1.3e-81 307.8 165 90.3
Cfa025019 Carpinus fangiana HOM05D005722 ORTHO05D123305 8.9e-46 188.7 441 30.8
Haze_02843 Corylus avellana HOM05D005722 ORTHO05D029153 2.4e-35 154.1 86 84.9
TPR.G39511 Trifolium pratense HOM05D005722 ORTHO05D029153 1.8e-30 137.9 72 88.9
Lsat_1_v5_gn_4_152401 Lactuca sativa HOM05D005722 ORTHO05D007934 4.6e-26 123.2 80 83.8
Pp3s34_270 Physcomitrium patens HOM05D005722 ORTHO05D317165 3.6e-23 113.6 387 25.3
Sc20g0005790 Simmondsia chinensis HOM05D005722 ORTHO05D029153 6.0e-18 96.3 56 75.0
MCO11G808 Micromonas commoda HOM05D005722 ORTHO05D268580 6.2e-15 86.3 363 24.0
MCO10G252 Micromonas commoda HOM05D005722 ORTHO05D270642 4.9e-12 76.6 381 25.7


User provided reference genes

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