Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016383 Carpinus fangiana HOM05D021618 ORTHO05D004480 5.0e-73 277.7 144 100.0
Haze_00184 Corylus avellana HOM05D021618 ORTHO05D004480 3.2e-51 205.3 177 66.1
Haze_00874 Corylus avellana HOM05D021618 ORTHO05D004480 2.9e-28 129.0 74 89.2
Haze_00182 Corylus avellana HOM05D021618 ORTHO05D004480 1.8e-22 109.8 56 96.4
Cfa016398 Carpinus fangiana HOM05D021618 ORTHO05D004480 1.2e-18 97.1 47 97.9
CiPaw.05G252200 Carya illinoinensis HOM05D004051 ORTHO05D004480 8.1e-15 84.3 81 58.0
CiPaw.05G255500 Carya illinoinensis HOM05D004051 ORTHO05D004480 3.1e-14 82.4 81 56.8
CiPaw.05G255100 Carya illinoinensis HOM05D004051 ORTHO05D004480 4.0e-14 82.0 81 56.8
Nn1g01872 Nelumbo nucifera HOM05D004051 ORTHO05D004480 4.9e-12 75.1 61 65.6
ClCG01G000480 Citrullus lanatus HOM05D004051 ORTHO05D004480 6.4e-12 74.7 87 51.7
QL09p009613 Quercus lobata HOM05D004051 ORTHO05D004480 8.4e-12 74.3 58 67.2
Actinidia03163 Actinidia chinensis HOM05D004051 ORTHO05D004480 1.4e-11 73.6 79 50.6
Eucgr.C00183 Eucalyptus grandis HOM05D004051 ORTHO05D004480 1.9e-11 73.2 57 68.4
TAR629G1304 Trochodendron aralioides HOM05D004051 ORTHO05D004480 2.4e-11 72.8 81 51.9
Sc13g0009750 Simmondsia chinensis HOM05D004051 ORTHO05D004480 7.1e-11 71.2 70 57.1
Dinv29295 Davidia involucrata HOM05D004051 ORTHO05D004480 1.2e-10 70.5 67 55.2
GSVIVG01038715001 Vitis vinifera HOM05D004051 ORTHO05D004480 4.6e-10 68.6 65 60.0
Nn3g19011 Nelumbo nucifera HOM05D004051 ORTHO05D004480 1.0e-09 67.4 67 55.2
Potri.012G011600 Populus trichocarpa HOM05D004051 ORTHO05D004480 1.3e-09 67.0 83 49.4
MELO3C005880.2 Cucumis melo HOM05D004051 ORTHO05D004480 1.8e-09 66.6 73 52.1
MBI06_g08462_MAGBIO Magnolia biondii HOM05D004051 ORTHO05D004480 2.3e-09 66.2 67 56.7
CsaV3_5G000560 Cucumis sativus L. HOM05D004051 ORTHO05D004480 5.1e-09 65.1 73 50.7
PGR042G3499 Punica granatum HOM05D004051 ORTHO05D004480 1.1e-08 63.9 72 51.4
Ciclev10006352m.g Citrus clementina HOM05D004051 ORTHO05D004480 1.5e-08 63.5 67 55.2
Manes.06G159300 Manihot esculenta HOM05D004051 ORTHO05D004480 1.5e-08 63.5 65 56.9
Atru.chr1.148 Acer truncatum HOM05D004051 ORTHO05D004480 1.9e-08 63.2 69 58.0
AUR62006115 Chenopodium quinoa HOM05D004051 ORTHO05D004480 3.3e-08 62.4 54 59.3
DCAR_010606 Daucus carota HOM05D004051 ORTHO05D004480 4.3e-08 62.0 44 63.6
AUR62019374 Chenopodium quinoa HOM05D004051 ORTHO05D004480 5.6e-08 61.6 69 50.7
Hund04853 Selenicereus undatus HOM05D004051 ORTHO05D004480 5.6e-08 61.6 57 54.4
Thecc.03G195700 Theobroma cacao HOM05D004051 ORTHO05D004480 9.6e-08 60.8 56 62.5
A02p40750 Brassica napus HOM05D004051 ORTHO05D004480 1.6e-07 60.1 73 52.1
Aa31LG11G3430 Aethionema arabicum HOM05D004051 ORTHO05D004480 2.1e-07 59.7 80 48.8
BcaB07g29898 Brassica carinata HOM05D004051 ORTHO05D004480 2.1e-07 59.7 73 52.1
COL.COLO4_03427 Corchorus olitorius HOM05D004051 ORTHO05D004480 2.1e-07 59.7 55 61.8
Gohir.D08G104000 Gossypium hirsutum HOM05D004051 ORTHO05D004480 2.1e-07 59.7 71 50.7
CDE02G2345 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 2.8e-07 59.3 67 50.7
GSVIVG01019535001 Vitis vinifera HOM05D004051 ORTHO05D004480 3.7e-07 58.9 67 50.7
AL6G35560 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 6.2e-07 58.2 67 55.2
Sp2g23150 Schrenkiella parvula HOM05D004051 ORTHO05D004480 6.2e-07 58.2 71 50.7
AT5G24165 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 8.1e-07 57.8 67 55.2
C07p43550 Brassica napus HOM05D004051 ORTHO05D004480 8.1e-07 57.8 73 50.7
BcaNung01214 Brassica carinata HOM05D004051 ORTHO05D004480 1.1e-06 57.4 69 52.2
Carub.0006s2191 Capsella rubella HOM05D004051 ORTHO05D004480 1.1e-06 57.4 67 55.2
CDE09G0659 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 1.1e-06 57.4 67 52.2
Gorai.004G111400 Gossypium raimondii HOM05D004051 ORTHO05D004480 1.1e-06 57.4 71 49.3
THA.LOC104821369 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 1.1e-06 57.4 35 74.3
A06p35000 Brassica napus HOM05D004051 ORTHO05D004480 1.4e-06 57.0 35 77.1
BraA06t26423Z Brassica rapa HOM05D004051 ORTHO05D004480 1.4e-06 57.0 35 77.1
Gohir.A08G096024 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.4e-06 57.0 71 49.3
Rhsim09G0205000 Rhododendron simsii HOM05D004051 ORTHO05D004480 1.4e-06 57.0 81 46.9
Sed0007169 Sechium edule HOM05D004051 ORTHO05D004480 1.4e-06 57.0 81 46.9
Thhalv10005218m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 1.8e-06 56.6 73 49.3
BolC7t44882H Brassica oleracea HOM05D004051 ORTHO05D004480 2.4e-06 56.2 73 49.3
FAN03G1224 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.4e-06 56.2 67 46.3
BcaC03g18002 Brassica carinata HOM05D016815 ORTHO05D020093 3.1e-06 55.8 68 51.5
BcaNung01808 Brassica carinata HOM05D004051 ORTHO05D004480 3.1e-06 55.8 73 49.3
CARHR189350 Cardamine hirsuta HOM05D004051 ORTHO05D004480 3.1e-06 55.8 67 53.7
FAN01G1391 Fragaria x ananassa HOM05D004051 ORTHO05D004480 6.9e-06 54.7 65 46.2


User provided reference genes

Program Settings