Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016368 Carpinus fangiana HOM05D000974 ORTHO05D007456 4.8e-126 454.9 300 100.0
Haze_00118 Corylus avellana HOM05D000974 ORTHO05D007456 6.2e-118 427.9 300 87.7
TWI39G1278 Tripterygium wilfordii HOM05D000974 ORTHO05D007456 1.2e-89 334.0 300 62.3
Manes.06G157800 Manihot esculenta HOM05D000974 ORTHO05D007456 1.6e-89 333.6 299 62.9
Ciclev10005489m.g Citrus clementina HOM05D000974 ORTHO05D007456 1.0e-88 330.9 309 61.8
CSS0027071 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D007456 2.0e-87 326.6 311 63.3
FAN06G0673 Fragaria x ananassa HOM05D000974 ORTHO05D007456 3.3e-87 325.9 309 61.2
FAN06G4709 Fragaria x ananassa HOM05D000974 ORTHO05D007456 3.3e-87 325.9 309 61.2
PGR142G2075 Punica granatum HOM05D000974 ORTHO05D007456 3.3e-87 325.9 308 62.7
TAR375G0325 Trochodendron aralioides HOM05D000974 ORTHO05D007456 4.4e-87 325.5 302 78.1
Actinidia34202 Actinidia chinensis HOM05D000974 ORTHO05D007456 5.7e-87 325.1 300 64.7
FAN10G1776 Fragaria x ananassa HOM05D000974 ORTHO05D007456 9.7e-87 324.3 309 61.2
FvH4_7g31090 Fragaria vesca HOM05D000974 ORTHO05D007456 1.7e-86 323.6 309 60.8
Potri.015G021400 Populus trichocarpa HOM05D000974 ORTHO05D007456 2.2e-86 323.2 299 62.9
Potri.015G021100 Populus trichocarpa HOM05D000974 ORTHO05D007456 4.8e-86 322.0 299 62.2
GSVIVG01028702001 Vitis vinifera HOM05D000974 ORTHO05D007456 4.8e-86 322.0 299 64.9
TAR636G3288 Trochodendron aralioides HOM05D000974 ORTHO05D007456 6.3e-86 321.6 300 72.0
Rhsim03G0199900 Rhododendron simsii HOM05D000974 ORTHO05D007456 1.1e-85 320.9 305 66.9
Potri.012G031000 Populus trichocarpa HOM05D000974 ORTHO05D007456 4.1e-85 318.9 302 61.3
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 2.0e-84 316.6 305 60.3
Thecc.03G193600 Theobroma cacao HOM05D000974 ORTHO05D007456 2.0e-84 316.6 298 60.7
RcHm_v2.0_Chr1g0380171 Rosa chinensis HOM05D000974 ORTHO05D007456 1.0e-83 314.3 304 59.9
Gorai.006G200500 Gossypium raimondii HOM05D000974 ORTHO05D007456 2.9e-83 312.8 300 61.3
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 5.0e-83 312.0 305 60.0
Gohir.D09G178500 Gossypium hirsutum HOM05D000974 ORTHO05D007456 5.0e-83 312.0 300 60.3
MD07G1285800 Malus domestica HOM05D000974 ORTHO05D007456 3.2e-82 309.3 312 59.0
Dinv28331 Davidia involucrata HOM05D000974 ORTHO05D007456 5.5e-82 308.5 254 67.3
Atru.chr1.258 Acer truncatum HOM05D000974 ORTHO05D007456 9.4e-82 307.8 309 72.5
Gohir.A09G183700 Gossypium hirsutum HOM05D000974 ORTHO05D007456 9.4e-82 307.8 301 60.8
Nitab4.5_0002589g0050 Nicotiana tabacum HOM05D000974 ORTHO05D007456 8.0e-81 304.7 300 61.7
Nitab4.5_0005625g0010 Nicotiana tabacum HOM05D000974 ORTHO05D007456 1.8e-80 303.5 300 60.3
DCAR_020306 Daucus carota HOM05D000974 ORTHO05D007456 3.0e-80 302.8 302 57.0
Cc02_g01830 Coffea canephora HOM05D000974 ORTHO05D007456 4.0e-80 302.4 300 56.7
AUR62006147 Chenopodium quinoa HOM05D000974 ORTHO05D007456 6.7e-80 301.6 300 60.0
COL.COLO4_35640 Corchorus olitorius HOM05D000974 ORTHO05D007456 6.7e-80 301.6 300 57.0
vmacro06564 Vaccinium macrocarpon HOM05D000974 ORTHO05D007456 1.1e-79 300.8 338 53.6
Aqoxy7G00132 Aquilegia oxysepala HOM05D000974 ORTHO05D007456 1.5e-79 300.4 305 64.9
DCAR_014533 Daucus carota HOM05D000974 ORTHO05D007456 1.5e-79 300.4 300 74.3
Peaxi162Scf00904g00123 Petunia axillaris HOM05D000974 ORTHO05D007456 2.6e-79 299.7 300 60.3
Oeu060978.1 Olea europaea HOM05D000974 ORTHO05D007456 4.4e-79 298.9 300 56.3
Cpa.g.sc34.147 Carica papaya HOM05D000974 ORTHO05D007456 5.7e-79 298.5 300 61.7
MBI07_g34227_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D007456 4.8e-78 295.4 301 71.4
PSO135G0499 Papaver somniferum HOM05D000974 ORTHO05D007456 1.8e-77 293.5 302 55.3
Prupe.2G308000 Prunus persica HOM05D000974 ORTHO05D002201 2.4e-77 293.1 305 57.4
Sabra12G0020600 Salix brachista HOM05D000974 ORTHO05D007456 4.1e-77 292.4 311 54.7
PSO384G1506 Papaver somniferum HOM05D000974 ORTHO05D007456 5.3e-77 292.0 302 55.0
Ca_16682_v3 Cicer arietinum L. HOM05D000974 ORTHO05D007456 7.0e-77 291.6 300 55.3
Lalb_Chr11g0066601 Lupinus albus HOM05D000974 ORTHO05D007456 9.1e-77 291.2 301 55.5
vmacro10108 Vaccinium macrocarpon HOM05D000974 ORTHO05D007456 1.2e-76 290.8 300 57.7
Glyma.04G238050 Glycine max HOM05D000974 ORTHO05D007456 2.7e-76 289.7 299 53.8
Glyma.06G125900 Glycine max HOM05D000974 ORTHO05D007456 7.7e-76 288.1 299 53.2
MD01G1215900 Malus domestica HOM05D000974 ORTHO05D007456 7.7e-76 288.1 312 56.4
arahy.Tifrunner.gnm1.ann1.D5FDUQ Arachis hypogaea HOM05D000974 ORTHO05D007456 1.0e-75 287.7 302 54.0
arahy.Tifrunner.gnm1.ann1.LG8YER Arachis hypogaea HOM05D000974 ORTHO05D007456 1.0e-75 287.7 302 54.0
Phvul.009G137800 Phaseolus vulgaris HOM05D000974 ORTHO05D007456 1.0e-75 287.7 299 53.2
Medtr3g090955 Medicago truncatula HOM05D000974 ORTHO05D007456 1.7e-75 287.0 302 55.0
Rhsim09G0204100 Rhododendron simsii HOM05D000974 ORTHO05D007456 1.7e-75 287.0 296 57.4
VMungo1309G2916 Vigna mungo HOM05D000974 ORTHO05D007456 2.9e-75 286.2 300 52.0
CANSAT21G0519 Cannabis sativa HOM05D000974 ORTHO05D007456 3.8e-75 285.8 316 53.8
Thhalv10005277m.g Eutrema salsugineum HOM05D000974 ORTHO05D007456 3.8e-75 285.8 317 53.6
ClCG01G000560 Citrullus lanatus HOM05D000974 ORTHO05D007456 5.0e-75 285.4 300 54.7
Migut.F00239 Erythranthe guttata HOM05D000974 ORTHO05D007456 5.0e-75 285.4 316 55.1
Carub.0006s2186 Capsella rubella HOM05D000974 ORTHO05D007456 6.5e-75 285.0 320 57.5
EL10Ac3g05342 Beta vulgaris HOM05D000974 ORTHO05D007456 8.5e-75 284.6 312 55.4
TPR.G17305 Trifolium pratense HOM05D000974 ORTHO05D007456 2.5e-74 283.1 306 53.6
CsaV3_5G000660 Cucumis sativus L. HOM05D000974 ORTHO05D007456 3.2e-74 282.7 301 54.8
A06p34970 Brassica napus HOM05D000974 ORTHO05D007456 5.5e-74 282.0 317 53.6
BraA06t26421Z Brassica rapa HOM05D000974 ORTHO05D007456 5.5e-74 282.0 317 53.6
BcaNung01815 Brassica carinata HOM05D000974 ORTHO05D007456 9.4e-74 281.2 317 53.3
C07p43580 Brassica napus HOM05D000974 ORTHO05D007456 1.6e-73 280.4 317 53.0
BolC7t44885H Brassica oleracea HOM05D000974 ORTHO05D007456 1.6e-73 280.4 317 53.0
SalBow4G2102 Salvia bowleyana HOM05D000974 ORTHO05D007456 2.7e-73 279.6 307 57.0
Sp2g23180 Schrenkiella parvula HOM05D000974 ORTHO05D007456 3.6e-73 279.3 317 52.7
AL6G35490 Arabidopsis lyrata HOM05D000974 ORTHO05D007456 2.3e-72 276.6 321 52.0
BcaNung01212 Brassica carinata HOM05D000974 ORTHO05D007456 2.3e-72 276.6 319 52.7
THA.LOC104821367 Tarenaya hassleriana HOM05D000974 ORTHO05D007456 2.3e-72 276.6 309 53.4
Nn1g01835 Nelumbo nucifera HOM05D000974 ORTHO05D007456 4.0e-72 275.8 300 68.3
AT5G24130 Arabidopsis thaliana HOM05D000974 ORTHO05D007456 5.2e-72 275.4 320 51.9
SalBow4G1511 Salvia bowleyana HOM05D000974 ORTHO05D007456 1.2e-71 274.2 307 67.4
SGA_v2.0_scaffold192G40573 Striga asiatica HOM05D000974 ORTHO05D007456 1.5e-71 273.9 309 52.8
Aa31LG11G3400 Aethionema arabicum HOM05D000974 ORTHO05D007456 3.4e-71 272.7 313 51.4
CARHR189450 Cardamine hirsuta HOM05D000974 ORTHO05D007456 3.4e-71 272.7 319 51.7
QL09p010742 Quercus lobata HOM05D000974 ORTHO05D007456 1.3e-70 270.8 264 76.5
Sed0023834 Sechium edule HOM05D000974 ORTHO05D007456 2.8e-70 269.6 300 52.0
Lsat_1_v5_gn_9_57980 Lactuca sativa HOM05D000974 ORTHO05D007456 3.7e-70 269.2 302 52.3
HanXRQChr09g0253031 Helianthus annuus HOM05D000974 ORTHO05D007456 4.8e-70 268.9 289 59.2
AUR62019342 Chenopodium quinoa HOM05D000974 ORTHO05D007456 2.4e-69 266.5 300 55.0
ECA232G4254 Erigeron canadensis HOM05D000974 ORTHO05D007456 2.7e-68 263.1 309 56.0
Lj1A1013G39 Lonicera japonica HOM05D000974 ORTHO05D007456 4.5e-68 262.3 300 53.3
Potri.015G021300 Populus trichocarpa HOM05D000974 ORTHO05D007456 5.9e-68 261.9 177 77.4
Lj1g0000480 Lotus japonicus HOM05D000974 ORTHO05D007456 2.1e-65 253.4 298 49.3
Duzib084G1361 Durio zibethinus HOM05D000974 ORTHO05D007456 1.7e-62 243.8 297 58.2
Psat5g079560 Pisum sativum HOM05D000974 ORTHO05D007456 3.7e-62 242.7 302 48.7
Oeu060979.1 Olea europaea HOM05D000974 ORTHO05D007456 6.3e-62 241.9 177 70.6
unitig_747.g21851 Utricularia gibba HOM05D000974 ORTHO05D007456 1.1e-61 241.1 266 52.3
Lsat_1_v5_gn_2_134181 Lactuca sativa HOM05D000974 ORTHO05D007456 4.1e-61 239.2 265 50.9
HanXRQChr14g0462881 Helianthus annuus HOM05D000974 ORTHO05D007456 2.3e-59 233.4 258 51.9
Rhsim09G0204200 Rhododendron simsii HOM05D000974 ORTHO05D007456 2.3e-59 233.4 260 53.8
CDE10G0850 Ceratophyllum demersum HOM05D000974 ORTHO05D007456 3.4e-55 219.5 302 59.6
HPP92_005207 Vanilla planifolia HOM05D000974 ORTHO05D007456 4.1e-53 212.6 310 46.1
Lj3A909T48 Lonicera japonica HOM05D000974 ORTHO05D007456 9.2e-53 211.5 278 48.2
CiPaw.05G257400 Carya illinoinensis HOM05D000974 ORTHO05D007456 3.5e-52 209.5 135 82.2
Zm00001eb238160 Zea mays HOM05D000974 ORTHO05D007456 1.0e-48 198.0 310 42.9
Os02g0257200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D007456 2.0e-47 193.7 304 58.2
MBI07_g45742_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D007456 2.8e-41 173.3 301 40.9
ECA238G2040 Erigeron canadensis HOM05D005084 ORTHO05D006254 3.6e-41 172.9 234 44.4
AagrBONN_evm.TU.Sc2ySwM_117.3541 Anthoceros agrestis HOM05D000974 ORTHO05D007456 4.0e-40 169.5 269 39.8
Oeu060977.1 Olea europaea HOM05D000974 ORTHO05D007456 6.4e-38 162.2 119 71.4
Actinidia08630 Actinidia chinensis HOM05D000974 ORTHO05D007456 2.4e-37 160.2 141 63.8
Zm00001eb345000 Zea mays HOM05D000974 ORTHO05D007456 2.1e-36 157.1 272 39.7
SMO347G0394 Selaginella moellendorffii HOM05D000974 ORTHO05D007456 1.7e-35 154.1 182 48.9
Lalb_Chr08g0240561 Lupinus albus HOM05D000974 ORTHO05D007456 7.3e-34 148.7 119 67.2
Mapoly0123s0011 Marchantia polymorpha HOM05D000974 ORTHO05D007456 7.3e-34 148.7 264 36.7
Os05g0586700 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D007456 3.6e-33 146.4 308 35.1
Rhsim02G0197500 Rhododendron simsii HOM05D000974 ORTHO05D007456 2.0e-31 140.6 177 48.0
Rhsim04G0082700 Rhododendron simsii HOM05D000974 ORTHO05D007456 9.9e-31 138.3 177 47.5
Pp3c2_19140 Physcomitrium patens HOM05D000974 ORTHO05D007456 6.0e-28 129.0 272 34.2
ATR0589G055 Amborella trichopoda HOM05D000974 ORTHO05D007456 7.8e-28 128.6 120 57.5
Sopen03g003300 Solanum pennellii HOM05D000974 ORTHO05D007456 2.3e-27 127.1 188 47.9
Hma1.2p1_1655F.1_g295980 Hydrangea macrophylla HOM05D000974 ORTHO05D007456 1.5e-26 124.4 184 51.1
PGSC0003DMG400009074 Solanum tuberosum HOM05D000974 ORTHO05D007456 1.2e-25 121.3 147 54.4
Pp3c3_31670 Physcomitrium patens HOM05D000974 ORTHO05D007456 3.4e-23 113.2 159 45.3
FAN01G0307 Fragaria x ananassa HOM05D000974 ORTHO05D007456 1.4e-21 107.8 309 33.3
Lalb_Chr08g0240551 Lupinus albus HOM05D000974 ORTHO05D007456 8.1e-17 92.0 70 62.9
CiPaw.05G257300 Carya illinoinensis HOM05D000974 ORTHO05D007456 8.4e-14 82.0 77 67.5
TAR629G1462 Trochodendron aralioides HOM05D000974 ORTHO05D007456 9.3e-13 78.6 60 65.0
Lalb_Chr08g0240541 Lupinus albus HOM05D000974 ORTHO05D007456 1.2e-12 78.2 77 57.1
Atru.chr1.262 Acer truncatum HOM05D000974 ORTHO05D007456 3.0e-11 73.6 85 57.6
vmacro10109 Vaccinium macrocarpon HOM05D000974 ORTHO05D007456 3.0e-11 73.6 151 34.4
CDE10G0750 Ceratophyllum demersum HOM05D000974 ORTHO05D007456 1.4e-08 64.7 75 50.7
DCAR_022594 Daucus carota HOM05D000974 ORTHO05D007456 1.2e-07 61.6 68 55.9
ATR0589G008 Amborella trichopoda HOM05D000974 ORTHO05D007456 5.8e-07 59.3 79 48.1


User provided reference genes

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