Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016332 Carpinus fangiana HOM05D005766 ORTHO05D007002 0.0e+00 1327.8 664 100.0
Haze_00083 Corylus avellana HOM05D005766 ORTHO05D007002 0.0e+00 1086.6 768 76.2
Prupe.2G304700 Prunus persica HOM05D005766 ORTHO05D007002 5.3e-303 1043.9 663 79.3
MD07G1282600 Malus domestica HOM05D005766 ORTHO05D007002 9.4e-284 979.9 711 71.7
GSVIVG01028775001 Vitis vinifera HOM05D005766 ORTHO05D007002 1.2e-283 979.5 673 75.0
TAR629G2087 Trochodendron aralioides HOM05D005766 ORTHO05D007002 1.6e-283 979.2 679 75.4
CANSAT21G0601 Cannabis sativa HOM05D005766 ORTHO05D007002 1.7e-280 969.1 665 74.9
Thecc.03G188900 Theobroma cacao HOM05D005766 ORTHO05D007002 1.5e-276 956.1 665 74.4
CsaV3_3G021770 Cucumis sativus L. HOM05D005766 ORTHO05D007002 1.2e-275 953.0 665 72.5
Potri.015G026100 Populus trichocarpa HOM05D005766 ORTHO05D007002 2.3e-274 948.7 669 73.2
Rhsim03G0196600 Rhododendron simsii HOM05D005766 ORTHO05D007002 2.0e-273 945.7 689 71.8
Nn1g01746 Nelumbo nucifera HOM05D005766 ORTHO05D007002 1.7e-272 942.6 674 73.0
Gohir.A12G254600 Gossypium hirsutum HOM05D005766 ORTHO05D007002 6.3e-272 940.6 665 73.7
Gorai.008G272400 Gossypium raimondii HOM05D005766 ORTHO05D007002 7.0e-271 937.2 665 73.2
Gohir.D12G254700 Gossypium hirsutum HOM05D005766 ORTHO05D007002 1.6e-270 936.0 665 73.1
Duzib205G0439 Durio zibethinus HOM05D005766 ORTHO05D007002 5.9e-270 934.1 665 72.9
CiPaw.05G259700 Carya illinoinensis HOM05D005766 ORTHO05D007002 7.7e-270 933.7 551 85.3
MELO3C006963.2 Cucumis melo HOM05D005766 ORTHO05D007002 2.5e-268 928.7 669 71.6
Hma1.2p1_0327F.1_g126600 Hydrangea macrophylla HOM05D005766 ORTHO05D007002 4.0e-266 921.4 664 70.9
PGR004G1861 Punica granatum HOM05D005766 ORTHO05D007002 5.2e-266 921.0 667 72.0
Manes.14G020100 Manihot esculenta HOM05D005766 ORTHO05D007002 2.0e-265 919.1 644 74.2
FvH4_7g30700 Fragaria vesca HOM05D005766 ORTHO05D007002 4.5e-262 907.9 628 75.2
PSO170G0163 Papaver somniferum HOM05D005766 ORTHO05D007002 3.3e-260 901.7 670 68.7
Phvul.007G077400 Phaseolus vulgaris HOM05D005766 ORTHO05D007002 9.8e-257 890.2 665 69.8
Glyma.10G228700 Glycine max HOM05D005766 ORTHO05D007002 4.9e-256 887.9 663 69.2
Glyma.20G164300 Glycine max HOM05D005766 ORTHO05D007002 4.9e-256 887.9 664 69.4
Lj5g0016487 Lotus japonicus HOM05D005766 ORTHO05D007002 4.9e-256 887.9 662 70.7
MD01G1212200 Malus domestica HOM05D005766 ORTHO05D007002 5.4e-255 884.4 660 68.9
Sed0015140 Sechium edule HOM05D005766 ORTHO05D007002 1.0e-253 880.2 622 73.0
vmacro06594 Vaccinium macrocarpon HOM05D005766 ORTHO05D007002 1.7e-253 879.4 741 64.5
TPR.G7746 Trifolium pratense HOM05D005766 ORTHO05D007002 4.7e-251 871.3 685 68.0
Aqoxy5G04049 Aquilegia oxysepala HOM05D005766 ORTHO05D007002 1.1e-250 870.2 675 66.7
Cc02_g02130 Coffea canephora HOM05D005766 ORTHO05D007002 5.2e-250 867.8 667 67.6
ClCG05G008560 Citrullus lanatus HOM05D005766 ORTHO05D007002 3.2e-247 858.6 662 67.8
Eucgr.K00307 Eucalyptus grandis HOM05D005766 ORTHO05D007002 7.1e-247 857.4 664 67.8
Lsat_1_v5_gn_2_61121 Lactuca sativa HOM05D005766 ORTHO05D007002 7.8e-238 827.4 675 64.6
MBI07_g26934_MAGBIO Magnolia biondii HOM05D005766 ORTHO05D007002 3.4e-233 812.0 680 65.6
Migut.F00259 Erythranthe guttata HOM05D005766 ORTHO05D007002 7.6e-233 810.8 663 62.7
Ah.07g206240 Amaranthus hybridus HOM05D005766 ORTHO05D007002 8.4e-232 807.4 700 61.6
ATR1131G022 Amborella trichopoda HOM05D005766 ORTHO05D007002 2.4e-231 805.8 678 62.2
arahy.Tifrunner.gnm1.ann1.8957SA Arachis hypogaea HOM05D005766 ORTHO05D007002 1.7e-229 799.7 675 63.3
Ca_10701_v3 Cicer arietinum L. HOM05D005766 ORTHO05D007002 1.7e-229 799.7 664 64.9
Lj1A1010T47 Lonicera japonica HOM05D005766 ORTHO05D007002 2.3e-229 799.3 676 64.5
arahy.Tifrunner.gnm1.ann1.M1FPNI Arachis hypogaea HOM05D005766 ORTHO05D007002 8.1e-227 790.8 630 65.9
Sabra15G0019200 Salix brachista HOM05D005766 ORTHO05D007002 1.1e-226 790.4 689 62.6
FAN06G2288 Fragaria x ananassa HOM05D005766 ORTHO05D007002 4.4e-225 785.0 674 64.2
FAN10G0167 Fragaria x ananassa HOM05D005766 ORTHO05D007002 9.3e-223 777.3 698 61.9
FAN10G3945 Fragaria x ananassa HOM05D005766 ORTHO05D007002 1.2e-222 776.9 698 61.7
TWI39G0494 Tripterygium wilfordii HOM05D005766 ORTHO05D007002 3.8e-216 755.4 668 62.6
Dinv28359 Davidia involucrata HOM05D005766 ORTHO05D007002 1.4e-215 753.4 561 70.1
CSS0041625 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 5.1e-213 745.0 524 73.1
CSS0024367 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 1.1e-210 737.3 525 72.8
ECA238G0894 Erigeron canadensis HOM05D005766 ORTHO05D000105 9.0e-210 734.2 572 66.4
FAN03G2278 Fragaria x ananassa HOM05D005766 ORTHO05D007002 7.6e-209 731.1 724 57.7
SalBow4G0986 Salvia bowleyana HOM05D005766 ORTHO05D007002 1.3e-208 730.3 661 59.5
RcHm_v2.0_Chr1g0379661 Rosa chinensis HOM05D005766 ORTHO05D007002 7.1e-207 724.5 494 76.7
Hund04814 Selenicereus undatus HOM05D005766 ORTHO05D007002 3.3e-204 715.7 668 60.3
Cpa.g.sc3.14 Carica papaya HOM05D005766 ORTHO05D007002 5.5e-199 698.4 707 57.3
QL11p056564 Quercus lobata HOM05D005766 ORTHO05D007002 2.7e-198 696.0 425 81.6
Lalb_Chr06g0161411 Lupinus albus HOM05D005766 ORTHO05D007002 6.9e-186 654.8 504 67.9
SGA_v2.0_scaffold192G40599 Striga asiatica HOM05D005766 ORTHO05D007002 3.2e-183 646.0 565 62.3
Mapoly0113s0021 Marchantia polymorpha HOM05D005766 ORTHO05D007002 9.7e-180 634.4 671 48.6
Ciclev10004767m.g Citrus clementina HOM05D005766 ORTHO05D007002 7.7e-177 624.8 507 66.5
Medtr1g099380 Medicago truncatula HOM05D005766 ORTHO05D007002 8.8e-173 611.3 476 68.9
FAN06G1885 Fragaria x ananassa HOM05D005766 ORTHO05D007002 1.4e-170 604.0 465 70.1
HPP92_022503 Vanilla planifolia HOM05D005766 ORTHO05D007002 1.8e-170 603.6 510 64.7
FAN01G0765 Fragaria x ananassa HOM05D005766 ORTHO05D007002 1.0e-168 597.8 465 69.9
Peaxi162Scf00023g00720 Petunia axillaris HOM05D005766 ORTHO05D007002 2.1e-166 590.1 553 60.4
HanXRQChr14g0440231 Helianthus annuus HOM05D005766 ORTHO05D007002 8.0e-166 588.2 340 83.8
Atru.chr1.315 Acer truncatum HOM05D005766 ORTHO05D007002 5.2e-165 585.5 435 71.0
Psat6g194920 Pisum sativum HOM05D005766 ORTHO05D007002 5.7e-164 582.0 430 70.0
Sc13g0009380 Simmondsia chinensis HOM05D005766 ORTHO05D007002 5.7e-164 582.0 491 66.0
Oeu003335.2 Olea europaea HOM05D005766 ORTHO05D007002 1.3e-163 580.9 474 65.2
Sopen12g011340 Solanum pennellii HOM05D005766 ORTHO05D007002 2.4e-162 576.6 480 65.6
EL10Ac3g05375 Beta vulgaris HOM05D005766 ORTHO05D007002 7.5e-156 555.1 484 61.8
Sabra15G0021700 Salix brachista HOM05D005766 ORTHO05D007002 1.9e-151 540.4 541 57.1
CDE02G1402 Ceratophyllum demersum HOM05D001977 ORTHO05D002246 1.3e-139 501.1 396 65.4
AagrBONN_evm.TU.Sc2ySwM_344.4899 Anthoceros agrestis HOM05D005766 ORTHO05D007002 7.3e-135 485.3 667 42.7
SEGI_39054 Sequoiadendron giganteum HOM05D005766 ORTHO05D007002 2.0e-132 477.2 468 56.4
unitig_37.g11976 Utricularia gibba HOM05D005766 ORTHO05D007002 2.8e-126 456.8 666 42.6
SMO203G0206 Selaginella moellendorffii HOM05D005766 ORTHO05D007002 2.7e-121 440.3 663 39.5
Glyma.09G181880 Glycine max HOM05D005766 ORTHO05D007002 4.7e-118 429.5 253 83.4
QL09p011984 Quercus lobata HOM05D005766 ORTHO05D007002 1.7e-115 421.0 284 75.7
Nitab4.5_0014657g0010 Nicotiana tabacum HOM05D005766 ORTHO05D007002 2.6e-100 370.5 268 69.8
QL11p056568 Quercus lobata HOM05D005766 ORTHO05D007002 9.0e-85 318.9 173 89.0
Atru.chr1.316 Acer truncatum HOM05D005766 ORTHO05D007002 8.7e-80 302.4 173 85.0
Nitab4.5_0000157g0190 Nicotiana tabacum HOM05D005766 ORTHO05D007002 3.1e-77 293.9 297 58.9
Actinidia08607 Actinidia chinensis HOM05D005766 ORTHO05D007002 1.4e-74 285.0 151 90.1
RcHm_v2.0_Chr1g0379651 Rosa chinensis HOM05D005766 ORTHO05D007002 3.2e-74 283.9 173 78.0
TWI39G0059 Tripterygium wilfordii HOM05D005766 ORTHO05D007002 3.6e-73 280.4 177 75.7
CBR_g23333 Chara braunii HOM05D005766 ORTHO05D007002 1.8e-69 268.1 275 50.9
Psat6g194960 Pisum sativum HOM05D000038 ORTHO05D007763 1.0e-67 262.3 174 74.1
Zm00001eb221900 Zea mays HOM05D005766 ORTHO05D007002 1.3e-67 261.9 336 45.8
DCAR_008901 Daucus carota HOM05D000149 ORTHO05D000076 1.0e-64 252.3 616 32.0
Sc13g0009390 Simmondsia chinensis HOM05D005766 ORTHO05D007002 2.6e-63 247.7 176 68.2
PGSC0003DMG400006615 Solanum tuberosum HOM05D005766 ORTHO05D007002 2.6e-63 247.7 173 67.6
Solyc12g021310.3 Solanum lycopersicum HOM05D005766 ORTHO05D007002 4.4e-63 246.9 173 67.1
Nitab4.5_0001504g0110 Nicotiana tabacum HOM05D005766 ORTHO05D007002 9.7e-63 245.7 178 68.0
Sopen12g011330 Solanum pennellii HOM05D005766 ORTHO05D007002 1.3e-62 245.4 173 65.9
HanXRQChr14g0440221 Helianthus annuus HOM05D005766 ORTHO05D007002 2.2e-62 244.6 173 65.9
Lalb_Chr06g0161401 Lupinus albus HOM05D005766 ORTHO05D007002 8.2e-62 242.7 173 67.1
Medtr1g099390 Medicago truncatula HOM05D005766 ORTHO05D007002 1.6e-60 238.4 175 65.7
Glyma.12G172150 Glycine max HOM05D005766 ORTHO05D007002 3.6e-57 227.3 140 81.4
QL09p011987 Quercus lobata HOM05D005766 ORTHO05D007002 8.0e-57 226.1 173 67.6
Actinidia08606 Actinidia chinensis HOM05D005766 ORTHO05D007002 9.7e-55 219.2 254 52.8
Glyma.18G131400 Glycine max HOM05D005766 ORTHO05D007002 1.5e-50 205.3 173 59.5
Glyma.03G072901 Glycine max HOM05D005766 ORTHO05D007002 3.2e-50 204.1 115 83.5
AUR62021076 Chenopodium quinoa HOM05D005766 ORTHO05D007002 3.4e-47 194.1 133 73.7
AUR62031455 Chenopodium quinoa HOM05D000038 ORTHO05D007763 4.4e-47 193.7 133 73.7
QL09p011981 Quercus lobata HOM05D005766 ORTHO05D007002 1.4e-45 188.7 101 86.1
CAN.G71.5 Capsicum annuum HOM05D005766 ORTHO05D007002 3.5e-44 184.1 130 71.5
Glyma.16G148650 Glycine max HOM05D005766 ORTHO05D007002 3.5e-44 184.1 111 80.2
Os05g0299300 Oryza sativa ssp. japonica HOM05D005766 ORTHO05D007002 4.5e-44 183.7 130 66.2
Glyma.10G228301 Glycine max HOM05D005766 ORTHO05D007002 3.8e-43 180.6 109 80.7
PRCOL_00006853 Prasinoderma coloniale HOM05D005766 ORTHO05D007002 1.7e-38 165.2 816 24.1
Nitab4.5_0000327g0060 Nicotiana tabacum HOM05D005766 ORTHO05D007002 3.7e-38 164.1 90 87.8
Duzib084G0599 Durio zibethinus HOM05D005766 ORTHO05D007002 1.3e-35 155.6 114 73.7
COL.COLO4_30253 Corchorus olitorius HOM05D005766 ORTHO05D007002 1.2e-33 149.1 198 50.0
arahy.Tifrunner.gnm1.ann1.DV56VC Arachis hypogaea HOM05D005766 ORTHO05D007002 2.0e-31 141.7 137 48.9
Cfa000854 Carpinus fangiana HOM05D005766 ORTHO05D007002 1.7e-30 138.7 77 84.4
Cre01.g002700 Chlamydomonas reinhardtii HOM05D005766 ORTHO05D007002 1.0e-27 129.4 198 33.3
CSS0010184 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 3.0e-27 127.9 78 75.6
Actinidia08608 Actinidia chinensis HOM05D005766 ORTHO05D007002 9.5e-26 122.9 68 80.9
CSS0002634 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 2.8e-25 121.3 68 82.4
arahy.Tifrunner.gnm1.ann1.XWQU4Z Arachis hypogaea HOM05D005766 ORTHO05D007002 2.0e-20 105.1 69 66.7
TPR.G27363 Trifolium pratense HOM05D005766 ORTHO05D007002 3.6e-17 94.4 58 72.4
arahy.Tifrunner.gnm1.ann1.118EZC Arachis hypogaea HOM05D005766 ORTHO05D007002 4.4e-15 87.4 56 71.4
Peaxi162Scf00603g00414 Petunia axillaris HOM05D007579 ORTHO05D000285 6.0e-12 77.0 71 56.3
Glyma.08G028700 Glycine max HOM05D005766 ORTHO05D007002 3.6e-09 67.8 41 75.6
Oeu023563.1 Olea europaea HOM05D005766 ORTHO05D007002 6.2e-09 67.0 88 45.5
Oeu049881.1 Olea europaea HOM05D005766 ORTHO05D007002 6.2e-09 67.0 56 58.9
arahy.Tifrunner.gnm1.ann1.AW6XP7 Arachis hypogaea HOM05D005766 ORTHO05D007002 8.1e-09 66.6 51 51.0
arahy.Tifrunner.gnm1.ann1.DC2VU6 Arachis hypogaea HOM05D000702 ORTHO05D007002 1.8e-08 65.5 129 38.0
arahy.Tifrunner.gnm1.ann1.3HS4ZY Arachis hypogaea HOM05D005766 ORTHO05D007002 6.8e-08 63.5 56 58.9
Oeu044897.1 Olea europaea HOM05D005766 ORTHO05D007002 1.2e-07 62.8 88 43.2
Oeu016993.1 Olea europaea HOM05D005766 ORTHO05D007002 1.5e-07 62.4 88 43.2
RcHm_v2.0_Chr4g0404071 Rosa chinensis HOM05D005766 ORTHO05D007002 2.6e-07 61.6 34 82.4
CSS0035081 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 7.6e-07 60.1 38 73.7
CSS0038194 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 2.9e-06 58.2 38 71.1
Gohir.D08G042200 Gossypium hirsutum HOM05D005813 ORTHO05D007310 2.9e-06 58.2 336 19.3
Gohir.D13G210800 Gossypium hirsutum HOM05D000836 ORTHO05D000709 6.4e-06 57.0 217 24.4
ECA233G2827 Erigeron canadensis HOM05D000836 ORTHO05D000709 8.4e-06 56.6 218 27.5
GSVIVG01035793001 Vitis vinifera HOM05D000836 ORTHO05D000709 8.4e-06 56.6 212 24.1


User provided reference genes

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