Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016302 Carpinus fangiana HOM05D006127 ORTHO05D007465 1.2e-310 1068.9 535 100.0
Haze_00059 Corylus avellana HOM05D006127 ORTHO05D007465 6.9e-277 956.8 535 91.6
QL09p012458 Quercus lobata HOM05D006127 ORTHO05D007465 2.2e-243 845.5 552 80.1
CiPaw.06G004100 Carya illinoinensis HOM05D006127 ORTHO05D007465 1.1e-239 833.2 529 82.2
Prupe.2G302400 Prunus persica HOM05D006127 ORTHO05D007465 6.3e-222 774.2 547 74.0
MD07G1280200 Malus domestica HOM05D006127 ORTHO05D007465 1.2e-220 770.0 552 73.9
CiPaw.05G261300 Carya illinoinensis HOM05D006127 ORTHO05D007465 1.1e-218 763.5 435 88.0
Ciclev10004691m.g Citrus clementina HOM05D006127 ORTHO05D007465 6.1e-217 757.7 548 72.6
Thecc.03G186000 Theobroma cacao HOM05D006127 ORTHO05D007465 7.3e-210 734.2 557 70.9
Dinv35267 Davidia involucrata HOM05D006127 ORTHO05D007465 2.1e-209 732.6 556 69.6
COL.COLO4_30292 Corchorus olitorius HOM05D006127 ORTHO05D007465 3.6e-209 731.9 557 70.6
Gohir.D11G229300 Gossypium hirsutum HOM05D006127 ORTHO05D007465 3.4e-207 725.3 555 69.9
Gorai.003G069400 Gossypium raimondii HOM05D006127 ORTHO05D007465 4.4e-207 724.9 555 69.9
CSS0002355 Camellia sinensis var. sinensis HOM05D006127 ORTHO05D007465 3.7e-206 721.8 559 69.2
Gohir.A11G225200 Gossypium hirsutum HOM05D006127 ORTHO05D007465 1.2e-204 716.8 555 69.0
Atru.chr1.338 Acer truncatum HOM05D006127 ORTHO05D007465 2.7e-204 715.7 531 71.6
Manes.06G153500 Manihot esculenta HOM05D006127 ORTHO05D007465 5.9e-204 714.5 559 69.1
CSS0021566 Camellia sinensis var. sinensis HOM05D006127 ORTHO05D007465 1.3e-203 713.4 563 68.6
MD01G1210100 Malus domestica HOM05D006127 ORTHO05D007465 9.5e-202 707.2 566 67.7
Sabra17G0124200 Salix brachista HOM05D006127 ORTHO05D007465 6.2e-201 704.5 567 67.0
Potri.017G148900 Populus trichocarpa HOM05D006127 ORTHO05D007465 1.0e-200 703.7 547 68.4
Actinidia34165 Actinidia chinensis HOM05D006127 ORTHO05D007465 9.8e-199 697.2 553 67.5
TWI23G0320 Tripterygium wilfordii HOM05D006127 ORTHO05D007465 1.2e-196 690.3 538 68.6
Phvul.004G105900 Phaseolus vulgaris HOM05D006127 ORTHO05D007465 2.0e-196 689.5 547 67.8
Potri.004G072100 Populus trichocarpa HOM05D006127 ORTHO05D007465 2.7e-196 689.1 535 68.8
Nitab4.5_0000472g0230 Nicotiana tabacum HOM05D006127 ORTHO05D007465 4.6e-196 688.3 460 76.3
CsaV3_5G001020 Cucumis sativus L. HOM05D006127 ORTHO05D007465 2.3e-195 686.0 558 64.9
ClCG01G000890 Citrullus lanatus HOM05D006127 ORTHO05D007465 8.6e-195 684.1 548 66.1
Ca_26803_v3 Cicer arietinum L. HOM05D006127 ORTHO05D007465 1.1e-194 683.7 547 66.4
Eucgr.A02719 Eucalyptus grandis HOM05D006127 ORTHO05D007465 1.9e-194 682.9 548 67.2
TAR374G0777 Trochodendron aralioides HOM05D006127 ORTHO05D007465 4.3e-194 681.8 472 73.1
Peaxi162Scf00444g00314 Petunia axillaris HOM05D006127 ORTHO05D007465 7.3e-194 681.0 464 76.5
PGSC0003DMG400009503 Solanum tuberosum HOM05D006127 ORTHO05D007465 9.5e-194 680.6 460 76.3
Lj2g0027649 Lotus japonicus HOM05D006127 ORTHO05D007465 2.1e-193 679.5 549 65.8
RcHm_v2.0_Chr1g0378611 Rosa chinensis HOM05D006127 ORTHO05D007465 2.1e-193 679.5 542 66.4
FAN06G3350 Fragaria x ananassa HOM05D006127 ORTHO05D007465 2.8e-193 679.1 529 68.4
Glyma.09G129300 Glycine max HOM05D006127 ORTHO05D007465 3.6e-193 678.7 545 67.3
Dinv28380 Davidia involucrata HOM05D006127 ORTHO05D007465 4.7e-193 678.3 550 67.5
Sed0008008 Sechium edule HOM05D006127 ORTHO05D007465 4.7e-193 678.3 551 64.1
PGR044G2596 Punica granatum HOM05D006127 ORTHO05D007465 6.2e-193 677.9 543 66.7
Solyc03g007620.3 Solanum lycopersicum HOM05D006127 ORTHO05D007465 1.1e-192 677.2 460 75.4
MELO3C005842.2 Cucumis melo HOM05D006127 ORTHO05D007465 1.4e-192 676.8 549 65.0
FAN10G2357 Fragaria x ananassa HOM05D006127 ORTHO05D007465 1.8e-192 676.4 530 67.5
Lalb_Chr01g0009501 Lupinus albus HOM05D006127 ORTHO05D007465 2.3e-192 676.0 528 67.4
Sopen03g003570 Solanum pennellii HOM05D006127 ORTHO05D007465 2.3e-192 676.0 460 75.4
FAN06G1782 Fragaria x ananassa HOM05D006127 ORTHO05D007465 3.1e-192 675.6 529 68.1
FAN10G0315 Fragaria x ananassa HOM05D006127 ORTHO05D007465 4.0e-192 675.2 530 67.5
Sabra04G0047500 Salix brachista HOM05D006127 ORTHO05D007465 9.9e-191 670.6 605 61.3
FAN03G2078 Fragaria x ananassa HOM05D006127 ORTHO05D007465 2.2e-190 669.5 529 67.5
FAN03G3352 Fragaria x ananassa HOM05D006127 ORTHO05D007465 1.1e-189 667.2 529 67.3
Nitab4.5_0001331g0020 Nicotiana tabacum HOM05D006127 ORTHO05D007465 1.9e-189 666.4 469 73.3
CAN.G236.3 Capsicum annuum HOM05D006127 ORTHO05D007465 4.1e-189 665.2 462 74.7
Medtr6g053110 Medicago truncatula HOM05D006127 ORTHO05D007465 1.1e-184 650.6 548 65.7
Lj1A1007G54 Lonicera japonica HOM05D006127 ORTHO05D007465 3.1e-184 649.0 481 70.1
MSTRG.8699 Avicennia marina HOM05D006127 ORTHO05D007465 5.2e-184 648.3 544 61.9
Gorai.006G199600 Gossypium raimondii HOM05D006127 ORTHO05D007465 5.2e-184 648.3 547 63.6
HanXRQChr00c0486g0575011 Helianthus annuus HOM05D006127 ORTHO05D007465 5.2e-184 648.3 550 61.6
arahy.Tifrunner.gnm1.ann1.AR9FJK Arachis hypogaea HOM05D006127 ORTHO05D007465 8.9e-184 647.5 562 64.2
Gohir.D09G177600 Gossypium hirsutum HOM05D006127 ORTHO05D007465 1.5e-183 646.7 547 63.4
THA.LOC104818243 Tarenaya hassleriana HOM05D006127 ORTHO05D007465 2.0e-183 646.4 514 66.9
arahy.Tifrunner.gnm1.ann1.HXNP43 Arachis hypogaea HOM05D006127 ORTHO05D007465 2.6e-183 646.0 555 64.5
AT5G62650 Arabidopsis thaliana HOM05D006127 ORTHO05D007465 3.2e-181 639.0 523 65.2
AL8G39630 Arabidopsis lyrata HOM05D006127 ORTHO05D007465 9.2e-181 637.5 534 64.0
Aa31LG11G990 Aethionema arabicum HOM05D006127 ORTHO05D007465 6.0e-180 634.8 532 64.7
Glyma.16G177100 Glycine max HOM05D006127 ORTHO05D007465 1.9e-178 629.8 541 63.4
Thhalv10003967m.g Eutrema salsugineum HOM05D006127 ORTHO05D007465 4.3e-178 628.6 533 62.7
Carub.0008s2341 Capsella rubella HOM05D006127 ORTHO05D007465 3.6e-177 625.5 505 66.3
Sp2g25830 Schrenkiella parvula HOM05D006127 ORTHO05D007465 6.2e-177 624.8 515 64.5
CARHR276460 Cardamine hirsuta HOM05D006127 ORTHO05D007465 1.8e-176 623.2 510 65.1
Cc02_g02250 Coffea canephora HOM05D006127 ORTHO05D007465 1.8e-176 623.2 432 72.7
PSO266G0017 Papaver somniferum HOM05D006127 ORTHO05D007465 1.2e-175 620.5 572 59.6
Gohir.A09G182900 Gossypium hirsutum HOM05D006127 ORTHO05D007465 1.5e-175 620.2 530 63.0
ECA232G4568 Erigeron canadensis HOM05D006127 ORTHO05D007465 2.0e-175 619.8 524 62.6
Migut.F00277 Erythranthe guttata HOM05D006127 ORTHO05D007465 6.4e-174 614.8 562 60.1
Nn6g32416 Nelumbo nucifera HOM05D006127 ORTHO05D007465 6.4e-174 614.8 577 60.7
Sc13g0009280 Simmondsia chinensis HOM05D006127 ORTHO05D007465 4.2e-173 612.1 493 65.5
PSO478G4852 Papaver somniferum HOM05D006127 ORTHO05D007465 5.4e-173 611.7 560 59.5
A06p29390 Brassica napus HOM05D006127 ORTHO05D007465 3.5e-172 609.0 510 64.7
BcaB02g09667 Brassica carinata HOM05D006127 ORTHO05D007465 4.6e-172 608.6 506 64.6
C03p64120 Brassica napus HOM05D006127 ORTHO05D007465 4.6e-172 608.6 501 65.1
BolC3t18667H Brassica oleracea HOM05D006127 ORTHO05D007465 4.6e-172 608.6 501 65.1
BcaC01g02503 Brassica carinata HOM05D006127 ORTHO05D007465 1.3e-171 607.1 508 64.4
BraA06t25889Z Brassica rapa HOM05D006127 ORTHO05D007465 1.3e-171 607.1 508 64.4
Lsat_1_v5_gn_9_56840 Lactuca sativa HOM05D006127 ORTHO05D007465 2.3e-171 606.3 538 60.8
EL10Ac3g05405 Beta vulgaris HOM05D006127 ORTHO05D007465 5.6e-170 601.7 542 61.8
HanXRQChr15g0494171 Helianthus annuus HOM05D006127 ORTHO05D007465 3.6e-169 599.0 530 60.6
GSVIVG01028824001 Vitis vinifera HOM05D006127 ORTHO05D007465 3.6e-169 599.0 436 69.7
Aqoxy7G00200 Aquilegia oxysepala HOM05D006127 ORTHO05D007465 4.0e-168 595.5 448 68.5
AUR62031438 Chenopodium quinoa HOM05D006127 ORTHO05D007465 2.9e-166 589.3 462 65.6
DCAR_008898 Daucus carota HOM05D006127 ORTHO05D007465 1.2e-164 583.9 547 59.4
Oeu003330.1 Olea europaea HOM05D006127 ORTHO05D007465 2.9e-158 562.8 416 66.8
Cpa.g.sc107.127 Carica papaya HOM05D006127 ORTHO05D007465 2.4e-157 559.7 437 68.0
SGA_v2.0_scaffold60G21123 Striga asiatica HOM05D006127 ORTHO05D007465 1.3e-155 553.9 554 56.5
unitig_747.g21859 Utricularia gibba HOM05D006127 ORTHO05D007465 2.4e-152 543.1 550 56.0
vmacro06616 Vaccinium macrocarpon HOM05D006127 ORTHO05D007465 6.9e-152 541.6 536 58.2
Rhsim03G0192200 Rhododendron simsii HOM05D006127 ORTHO05D007465 8.4e-150 534.6 545 56.9
Ah.07g206460 Amaranthus hybridus HOM05D006127 ORTHO05D007465 1.1e-149 534.3 544 56.1
CDE04G3725 Ceratophyllum demersum HOM05D006127 ORTHO05D007465 1.6e-148 530.4 502 56.2
Hund04798 Selenicereus undatus HOM05D006127 ORTHO05D007465 1.6e-148 530.4 671 47.8
ATR0721G168 Amborella trichopoda HOM05D006127 ORTHO05D007465 2.7e-148 529.6 484 60.3
FvH4_7g30450 Fragaria vesca HOM05D006127 ORTHO05D007465 7.9e-148 528.1 369 74.3
Zm00001eb119480 Zea mays HOM05D006127 ORTHO05D007465 2.2e-145 520.0 529 54.4
AUR62021102 Chenopodium quinoa HOM05D006127 ORTHO05D007465 1.4e-144 517.3 462 60.2
Psat0s2186g0040 Pisum sativum HOM05D006127 ORTHO05D007465 5.3e-144 515.4 396 71.0
TPR.G9177 Trifolium pratense HOM05D006127 ORTHO05D007465 8.5e-142 508.1 340 77.6
Ah.13g069260 Amaranthus hybridus HOM05D006127 ORTHO05D007465 9.3e-141 504.6 410 62.7
HPP92_008801 Vanilla planifolia HOM05D006127 ORTHO05D007465 6.5e-134 481.9 532 51.9
Oeu027861.1 Olea europaea HOM05D006127 ORTHO05D007465 6.3e-113 412.1 453 52.5
Nn1g01683 Nelumbo nucifera HOM05D006127 ORTHO05D007465 2.2e-110 403.7 536 48.1
VMungo0464G0768 Vigna mungo HOM05D006127 ORTHO05D007465 1.2e-108 397.9 321 68.2
BcaB02g09671 Brassica carinata HOM05D006127 ORTHO05D007465 2.1e-108 397.1 489 50.5
HPP92_005266 Vanilla planifolia HOM05D006127 ORTHO05D007465 9.1e-104 381.7 368 53.8
CDE03G0317 Ceratophyllum demersum HOM05D006127 ORTHO05D007465 1.0e-91 341.7 284 58.5
SGA_v2.0_scaffold192G40622 Striga asiatica HOM05D006127 ORTHO05D007465 3.0e-91 340.1 259 67.2
FAN01G1207 Fragaria x ananassa HOM05D006127 ORTHO05D007465 3.1e-83 313.5 246 68.3
Mapoly0009s0032 Marchantia polymorpha HOM05D006127 ORTHO05D007465 2.9e-73 280.4 532 36.7
Os01g0225300 Oryza sativa ssp. japonica HOM05D006127 ORTHO05D007465 3.5e-71 273.5 282 52.5
AagrBONN_evm.TU.Sc2ySwM_368.2100 Anthoceros agrestis HOM05D006127 ORTHO05D007465 1.9e-69 267.7 543 35.0
Cfa002216 Carpinus fangiana HOM05D006127 ORTHO05D007465 1.7e-62 244.6 240 61.2
Pp3c17_22580 Physcomitrium patens HOM05D006127 ORTHO05D007465 6.2e-60 236.1 562 31.7
arahy.Tifrunner.gnm1.ann1.KML1I1 Arachis hypogaea HOM05D006127 ORTHO05D007465 3.6e-52 210.3 246 52.0
SEGI_03634 Sequoiadendron giganteum HOM05D006127 ORTHO05D007465 2.8e-36 157.5 120 60.8
AL8G39600 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 6.9e-35 152.9 95 77.9
TPR.G27774 Trifolium pratense HOM05D006127 ORTHO05D007465 1.5e-34 151.8 168 50.0
SMO266G0103 Selaginella moellendorffii HOM05D006127 ORTHO05D007465 5.5e-32 143.3 203 35.0
TPR.G9175 Trifolium pratense HOM05D006127 ORTHO05D007465 5.9e-26 123.2 80 72.5
COL.COLO4_36023 Corchorus olitorius HOM05D006127 ORTHO05D161883 1.2e-23 115.5 62 83.9
Ah.13g069250 Amaranthus hybridus HOM05D006127 ORTHO05D007465 1.7e-17 95.1 154 48.1
SEGI_25179 Sequoiadendron giganteum HOM05D006127 ORTHO05D007465 7.2e-16 89.7 82 53.7
Aqoxy1G04253 Aquilegia oxysepala HOM05D006127 ORTHO05D078839 3.0e-06 57.8 59 59.3


User provided reference genes

Program Settings