Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016295 Carpinus fangiana HOM05D002465 ORTHO05D005308 0.0e+00 1963.0 1011 100.0
Haze_00055 Corylus avellana HOM05D002465 ORTHO05D005308 0.0e+00 1075.1 606 90.4
QL09p012529 Quercus lobata HOM05D002465 ORTHO05D005308 8.4e-276 954.1 597 80.6
Dinv35264 Davidia involucrata HOM05D002465 ORTHO05D005308 8.3e-231 804.7 592 69.3
Thecc.03G185500 Theobroma cacao HOM05D002465 ORTHO05D005308 3.5e-229 799.3 597 67.3
TAR374G1583 Trochodendron aralioides HOM05D002465 ORTHO05D005308 1.0e-228 797.7 536 74.3
GSVIVG01028829001 Vitis vinifera HOM05D002465 ORTHO05D005308 1.1e-227 794.3 597 67.5
Ciclev10006841m.g Citrus clementina HOM05D002465 ORTHO05D005308 3.6e-226 789.3 590 69.2
Manes.06G153300 Manihot esculenta HOM05D002465 ORTHO05D005308 8.3e-223 778.1 598 68.1
Prupe.2G301900 Prunus persica HOM05D002465 ORTHO05D005308 5.9e-221 771.9 599 67.4
Gorai.008G274000 Gossypium raimondii HOM05D002465 ORTHO05D005308 1.9e-219 766.9 594 65.7
Actinidia34161 Actinidia chinensis HOM05D002465 ORTHO05D005308 4.3e-219 765.8 597 65.8
MD01G1209800 Malus domestica HOM05D002465 ORTHO05D005308 1.6e-218 763.8 598 65.2
CiPaw.05G261600 Carya illinoinensis HOM05D002465 ORTHO05D005308 1.4e-217 760.8 481 81.5
Cpa.g.sc107.121 Carica papaya HOM05D002465 ORTHO05D005308 1.3e-215 754.2 597 66.0
Potri.017G148000 Populus trichocarpa HOM05D002465 ORTHO05D005308 1.1e-214 751.1 598 65.9
Sabra17G0123700 Salix brachista HOM05D002465 ORTHO05D005308 5.0e-212 742.3 613 64.6
Sabra17G0123300 Salix brachista HOM05D002465 ORTHO05D005308 1.2e-210 737.6 583 66.0
TWI23G1289 Tripterygium wilfordii HOM05D002465 ORTHO05D005308 1.2e-210 737.6 627 61.7
RcHm_v2.0_Chr1g0378531 Rosa chinensis HOM05D002465 ORTHO05D005308 2.8e-210 736.5 598 64.7
FAN10G1435 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.2e-208 731.1 580 66.0
Aqoxy5G04085 Aquilegia oxysepala HOM05D002465 ORTHO05D005308 2.6e-208 729.9 597 63.0
Eucgr.A02722 Eucalyptus grandis HOM05D002465 ORTHO05D005308 5.8e-208 728.8 592 65.5
Lj1C1006G4 Lonicera japonica HOM05D002465 ORTHO05D005308 5.8e-208 728.8 557 66.4
COL.COLO4_30301 Corchorus olitorius HOM05D002465 ORTHO05D005308 9.8e-208 728.0 580 65.5
Nn1g01670 Nelumbo nucifera HOM05D002465 ORTHO05D005308 6.4e-207 725.3 535 69.3
PSO170G2577 Papaver somniferum HOM05D002465 ORTHO05D005308 1.1e-206 724.5 596 62.9
Gohir.D12G255900 Gossypium hirsutum HOM05D002465 ORTHO05D005308 1.4e-206 724.2 594 63.3
FAN06G3650 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.4e-206 723.4 580 65.3
FAN06G0430 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.1e-206 722.6 580 65.2
FAN10G1194 Fragaria x ananassa HOM05D002465 ORTHO05D005308 7.0e-206 721.8 580 65.5
FvH4_7g30390 Fragaria vesca HOM05D002465 ORTHO05D005308 9.2e-206 721.5 576 65.3
TPR.G9187 Trifolium pratense HOM05D002465 ORTHO05D005308 7.8e-205 718.4 600 62.5
ClCG05G008450 Citrullus lanatus HOM05D002465 ORTHO05D005308 3.0e-204 716.5 565 65.5
Medtr6g052330 Medicago truncatula HOM05D002465 ORTHO05D005308 3.0e-204 716.5 603 60.2
Cc02_g02290 Coffea canephora HOM05D002465 ORTHO05D005308 3.9e-204 716.1 614 61.2
Duzib205G0901 Durio zibethinus HOM05D002465 ORTHO05D005308 2.5e-203 713.4 578 63.8
Nitab4.5_0007593g0010 Nicotiana tabacum HOM05D002465 ORTHO05D005308 7.3e-203 711.8 595 62.0
Rhsim03G0191700 Rhododendron simsii HOM05D002465 ORTHO05D005308 4.7e-202 709.1 524 66.8
Lj2g0016146 Lotus japonicus HOM05D002465 ORTHO05D005308 6.2e-202 708.8 606 61.7
EL10Ac3g05400 Beta vulgaris HOM05D002465 ORTHO05D005308 1.4e-201 707.6 593 59.5
CsaV3_3G017530 Cucumis sativus L. HOM05D002465 ORTHO05D005308 1.8e-201 707.2 555 65.2
Sed0022656 Sechium edule HOM05D002465 ORTHO05D005308 4.0e-201 706.1 567 65.1
Sc13g0009230 Simmondsia chinensis HOM05D002465 ORTHO05D005308 6.8e-201 705.3 564 61.3
Lalb_Chr19g0130571 Lupinus albus HOM05D002465 ORTHO05D005308 1.2e-200 704.5 604 58.9
FAN03G3136 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.4e-200 702.6 603 62.4
Sopen12g022610 Solanum pennellii HOM05D002465 ORTHO05D005308 1.3e-199 701.0 592 61.3
PGR042G3288 Punica granatum HOM05D002465 ORTHO05D005308 1.9e-198 697.2 588 61.2
BcaC03g14499 Brassica carinata HOM05D002465 ORTHO05D005308 9.2e-198 694.9 1013 44.3
DCAR_008895 Daucus carota HOM05D002465 ORTHO05D005308 1.2e-197 694.5 551 63.5
Glyma.09G129600 Glycine max HOM05D002465 ORTHO05D005308 2.1e-197 693.7 600 60.0
CAN.G290.13 Capsicum annuum HOM05D002465 ORTHO05D005308 1.0e-196 691.4 595 57.8
Gohir.A12G253600 Gossypium hirsutum HOM05D002465 ORTHO05D005308 4.7e-194 682.6 597 59.8
Migut.F00281 Erythranthe guttata HOM05D002465 ORTHO05D005308 8.1e-194 681.8 545 64.0
Ah.07g206490 Amaranthus hybridus HOM05D002465 ORTHO05D005308 4.0e-193 679.5 606 57.9
ECA232G4104 Erigeron canadensis HOM05D002465 ORTHO05D005308 6.8e-193 678.7 599 59.4
BcaB05g21981 Brassica carinata HOM05D002465 ORTHO05D005308 1.2e-189 667.9 592 58.6
HanXRQChr15g0494161 Helianthus annuus HOM05D002465 ORTHO05D005308 3.5e-189 666.4 596 59.1
Nitab4.5_0008234g0010 Nicotiana tabacum HOM05D002465 ORTHO05D005308 6.0e-189 665.6 606 58.7
Psat0s1684g0080 Pisum sativum HOM05D002465 ORTHO05D005308 6.0e-189 665.6 551 61.9
Oeu036031.1 Olea europaea HOM05D002465 ORTHO05D005308 1.7e-188 664.1 578 59.9
AUR62021107 Chenopodium quinoa HOM05D002465 ORTHO05D005308 3.3e-187 659.8 591 58.0
Thhalv10012991m.g Eutrema salsugineum HOM05D002465 ORTHO05D005308 4.3e-187 659.4 593 59.7
C02p19370 Brassica napus HOM05D002465 ORTHO05D005308 7.3e-187 658.7 585 58.8
THA.LOC104811947 Tarenaya hassleriana HOM05D002465 ORTHO05D005308 6.2e-186 655.6 533 60.8
Carub.0008s1296 Capsella rubella HOM05D002465 ORTHO05D005308 8.1e-186 655.2 544 60.7
BraA02t06223Z Brassica rapa HOM05D002465 ORTHO05D005308 1.1e-185 654.8 586 58.7
Hund04793 Selenicereus undatus HOM05D002465 ORTHO05D005308 1.4e-185 654.4 557 58.3
SGA_v2.0_scaffold60G21117 Striga asiatica HOM05D002465 ORTHO05D005308 1.8e-185 654.1 622 54.8
A02p11610 Brassica napus HOM05D002465 ORTHO05D005308 2.4e-185 653.7 585 58.3
Hma1.2p1_0274F.1_g110040 Hydrangea macrophylla HOM05D002465 ORTHO05D005308 4.0e-185 652.9 559 61.0
MBI04_g26956_MAGBIO Magnolia biondii HOM05D002465 ORTHO05D005308 6.9e-185 652.1 515 65.4
Lsat_1_v5_gn_9_56800 Lactuca sativa HOM05D002465 ORTHO05D005308 3.4e-184 649.8 591 57.4
SalBow4G2218 Salvia bowleyana HOM05D002465 ORTHO05D005308 1.1e-182 644.8 555 59.6
AUR62031432 Chenopodium quinoa HOM05D002465 ORTHO05D005308 1.6e-181 641.0 591 57.4
BolC2t08072H Brassica oleracea HOM05D002465 ORTHO05D005308 2.3e-180 637.1 571 58.1
AL8G27230 Arabidopsis lyrata HOM05D002465 ORTHO05D005308 2.1e-178 630.6 555 59.1
FAN01G1269 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.5e-176 622.9 594 57.6
MELO3C006956.2 Cucumis melo HOM05D002465 ORTHO05D005308 9.9e-176 621.7 565 59.5
vmacro06621 Vaccinium macrocarpon HOM05D002465 ORTHO05D005308 3.8e-175 619.8 460 71.1
Aa31LG3G9040 Aethionema arabicum HOM05D002465 ORTHO05D005308 1.4e-174 617.8 568 55.5
Sp6g14950 Schrenkiella parvula HOM05D002465 ORTHO05D005308 1.4e-174 617.8 602 55.6
Atru.BG.183.p Acer truncatum HOM05D002465 ORTHO05D005308 3.2e-174 616.7 417 75.8
AT5G52800 Arabidopsis thaliana HOM05D002465 ORTHO05D005308 1.0e-172 611.7 565 56.3
arahy.Tifrunner.gnm1.ann1.77GMEU Arachis hypogaea HOM05D002465 ORTHO05D005308 7.6e-168 595.5 598 55.2
Os07g0467900 Oryza sativa ssp. japonica HOM05D002465 ORTHO05D005308 1.2e-165 588.2 543 56.4
ATR0661G279 Amborella trichopoda HOM05D002465 ORTHO05D005308 2.1e-165 587.4 544 55.7
Phvul.004G106200 Phaseolus vulgaris HOM05D002465 ORTHO05D005308 6.7e-164 582.4 501 60.7
SHI09096 Sapria himalayana HOM05D002465 ORTHO05D005308 3.1e-161 573.5 464 63.1
DCAR_029292 Daucus carota HOM05D002465 ORTHO05D005308 3.4e-160 570.1 473 58.4
DCAR_018565 Daucus carota HOM05D002465 ORTHO05D005308 1.1e-158 565.1 488 57.0
Peaxi162Scf00023g00823 Petunia axillaris HOM05D002465 ORTHO05D005308 1.3e-156 558.1 446 63.5
HPP92_015081 Vanilla planifolia HOM05D002465 ORTHO05D005308 3.0e-156 557.0 508 57.7
arahy.Tifrunner.gnm1.ann1.TJ5MNL Arachis hypogaea HOM05D002465 ORTHO05D005308 7.4e-155 552.4 419 66.3
unitig_52.g17726 Utricularia gibba HOM05D002465 ORTHO05D005308 2.4e-153 547.4 528 54.7
Medtr6g052340 Medicago truncatula HOM05D002465 ORTHO05D005308 1.2e-152 545.0 405 65.2
CSS0029570 Camellia sinensis var. sinensis HOM05D002465 ORTHO05D005308 2.2e-143 514.2 349 73.1
Mapoly0051s0060 Marchantia polymorpha HOM05D002465 ORTHO05D005308 2.9e-127 460.7 544 46.0
Ca_26606_v3 Cicer arietinum L. HOM05D002465 ORTHO05D005308 4.2e-126 456.8 577 47.8
RcHm_v2.0_Chr3g0497461 Rosa chinensis HOM05D002465 ORTHO05D005308 1.2e-125 455.3 372 64.0
AagrBONN_evm.TU.Sc2ySwM_228.3313 Anthoceros agrestis HOM05D002465 ORTHO05D005308 1.8e-124 451.4 608 42.6
Pp3c1_12340 Physcomitrium patens HOM05D002465 ORTHO05D005308 2.8e-122 444.1 561 44.2
MSTRG.8702 Avicennia marina HOM05D002465 ORTHO05D005308 2.0e-120 438.0 341 64.8
Sabra17G0121400 Salix brachista HOM05D002465 ORTHO05D005308 1.2e-112 412.1 339 66.1
CBR_g36403 Chara braunii HOM05D002465 ORTHO05D005308 1.8e-100 371.7 473 43.1
SMO103G0001 Selaginella moellendorffii HOM05D002465 ORTHO05D005308 4.4e-99 367.1 399 48.9
CANSAT21G2443 Cannabis sativa HOM05D002465 ORTHO05D005308 4.9e-98 363.6 342 58.2
VMungo0464G1215 Vigna mungo HOM05D002465 ORTHO05D005308 1.3e-95 355.5 291 60.8
SEGI_25618 Sequoiadendron giganteum HOM05D002465 ORTHO05D005308 2.4e-73 281.6 215 61.4
DCAR_005086 Daucus carota HOM05D002465 ORTHO05D005308 9.2e-73 279.6 334 44.6
MSTRG.8701 Avicennia marina HOM05D002465 ORTHO05D005308 7.3e-70 270.0 254 55.1
CSS0047166 Camellia sinensis var. sinensis HOM05D002465 ORTHO05D005308 9.9e-67 259.6 217 59.4
FAN05G2518 Fragaria x ananassa HOM05D002465 ORTHO05D005308 8.4e-66 256.5 161 75.2
FAN09G4610 Fragaria x ananassa HOM05D002465 ORTHO05D005308 8.4e-66 256.5 161 75.2
FAN10G2552 Fragaria x ananassa HOM05D002465 ORTHO05D005308 8.4e-66 256.5 161 75.2
FAN25G3664 Fragaria x ananassa HOM05D002465 ORTHO05D005308 8.4e-66 256.5 161 75.2
DCAR_030059 Daucus carota HOM05D002465 ORTHO05D005308 1.4e-65 255.8 183 63.9
MCO12G313 Micromonas commoda HOM05D002465 ORTHO05D005308 8.7e-63 246.5 380 37.1
DCAR_029376 Daucus carota HOM05D002465 ORTHO05D005308 4.8e-61 240.7 155 68.4
MD01G1209700 Malus domestica HOM05D002465 ORTHO05D005308 6.7e-55 220.3 225 59.1
Oeu058603.1 Olea europaea HOM05D002465 ORTHO05D005308 1.1e-54 219.5 196 59.2
Zm00001eb320240 Zea mays HOM05D002465 ORTHO05D005308 1.1e-52 213.0 240 47.9
Actinidia08586 Actinidia chinensis HOM05D002465 ORTHO05D008860 4.3e-46 191.0 241 45.6
HPP92_028543 Vanilla planifolia HOM05D002465 ORTHO05D005308 1.6e-45 189.1 178 51.7
Actinidia08585 Actinidia chinensis HOM05D002465 ORTHO05D005308 5.7e-38 164.1 98 76.5
Psat0s1616g0040 Pisum sativum HOM05D002465 ORTHO05D005308 1.0e-34 153.3 152 58.6
PRCOL_00005773 Prasinoderma coloniale HOM05D002465 ORTHO05D005308 1.1e-33 149.8 446 28.3
FAN03G1432 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.9e-33 149.1 161 50.9
FAN09G0727 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.9e-33 149.1 161 50.9
FAN09G3189 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.9e-33 149.1 161 50.9
FAN14G0324 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.9e-33 149.1 161 50.9
FAN16G1547 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.9e-33 149.1 161 50.9
FAN21G0521 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.9e-33 149.1 161 50.9
FAN22G1212 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.9e-33 149.1 161 50.9
FAN25G1827 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.9e-33 149.1 161 50.9
FAN25G2717 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.9e-33 149.1 161 50.9
FAN27G0148 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.9e-33 149.1 161 50.9
FAN27G0541 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.9e-33 149.1 161 50.9
FAN27G0848 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.9e-33 149.1 161 50.9
FAN28G0992 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.9e-33 149.1 161 50.9
DCAR_030105 Daucus carota HOM05D002465 ORTHO05D005308 4.2e-33 147.9 228 36.4
vmacro06620 Vaccinium macrocarpon HOM05D002465 ORTHO05D005308 7.2e-33 147.1 142 47.2
RcHm_v2.0_Chr1g0361031 Rosa chinensis HOM05D002465 ORTHO05D005308 3.6e-32 144.8 89 73.0
SEGI_28877 Sequoiadendron giganteum HOM05D002465 ORTHO05D005308 5.1e-31 141.0 173 42.8
Cre17.g705150 Chlamydomonas reinhardtii HOM05D002465 ORTHO05D005308 4.8e-29 134.4 363 27.0
Sabra17G0121500 Salix brachista HOM05D002465 ORTHO05D005308 6.5e-26 124.0 140 52.9
Rhsim10G0052100 Rhododendron simsii HOM05D002465 ORTHO05D036401 6.7e-23 114.0 147 54.4
CBR_g81559 Chara braunii HOM05D002465 ORTHO05D005308 2.6e-22 112.1 171 36.3
PSO063G0346 Papaver somniferum HOM05D002465 ORTHO05D005308 2.2e-21 109.0 118 50.0
Sabra18G0007300 Salix brachista HOM05D002718 ORTHO05D003269 7.0e-20 104.0 73 82.2
CBR_g19350 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-16 93.2 162 34.6
FAN23G0684 Fragaria x ananassa HOM05D002465 ORTHO05D000592 1.2e-16 93.2 160 36.9
Nitab4.5_0007593g0030 Nicotiana tabacum HOM05D002465 ORTHO05D005308 2.1e-16 92.4 45 88.9
Solyc12g044350.1 Solanum lycopersicum HOM05D002465 ORTHO05D005308 9.1e-12 77.0 70 58.6
Psat2g076120 Pisum sativum HOM05D024525 ORTHO05D005308 1.3e-10 73.2 70 51.4
Cre12.g553253 Chlamydomonas reinhardtii HOM05D002465 ORTHO05D145954 8.5e-10 70.5 86 38.4
Psat7g022520 Pisum sativum HOM05D024525 ORTHO05D005308 5.5e-09 67.8 77 45.5
FAN01G2746 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.2e-06 60.1 53 54.7
Peaxi162Scf00023g00818 Petunia axillaris HOM05D002465 ORTHO05D005308 1.2e-06 60.1 74 43.2
CBR_g47978 Chara braunii HOM05D002465 ORTHO05D005308 5.7e-06 57.8 102 31.4


User provided reference genes

Program Settings