Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016250 Carpinus fangiana HOM05D003962 ORTHO05D004714 0.0e+00 1925.2 1195 100.0
Haze_00190 Corylus avellana HOM05D003962 ORTHO05D004714 0.0e+00 1385.9 1094 74.5
CiPaw.05G251700 Carya illinoinensis HOM05D003962 ORTHO05D004714 0.0e+00 1275.0 1245 70.0
QL09p009481 Quercus lobata HOM05D003962 ORTHO05D004714 0.0e+00 1245.7 1296 69.2
CiPaw.06G010000 Carya illinoinensis HOM05D003962 ORTHO05D004714 0.0e+00 1182.9 1239 67.5
MD01G1219900 Malus domestica HOM05D003962 ORTHO05D004714 6.5e-251 871.7 1278 54.5
Prupe.2G311300 Prunus persica HOM05D003962 ORTHO05D004714 5.2e-240 835.5 1270 53.6
COL.COLO4_11264 Corchorus olitorius HOM05D003962 ORTHO05D004714 1.2e-233 814.3 1215 46.1
Ciclev10004179m.g Citrus clementina HOM05D003962 ORTHO05D004714 2.1e-233 813.5 1231 54.3
Duzib205G1946 Durio zibethinus HOM05D003962 ORTHO05D004714 4.4e-231 805.8 1242 50.9
FvH4_7g31740 Fragaria vesca HOM05D003962 ORTHO05D004714 1.2e-228 797.7 1269 52.2
Thecc.03G196300 Theobroma cacao HOM05D003962 ORTHO05D004714 1.6e-228 797.3 1233 54.3
FAN10G2253 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.7e-227 793.9 1269 51.9
CANSAT21G2091 Cannabis sativa HOM05D003962 ORTHO05D004714 1.1e-226 791.2 1283 52.4
Atru.chr1.164 Acer truncatum HOM05D003962 ORTHO05D004714 2.8e-225 786.6 1244 54.4
Duzib068G0757 Durio zibethinus HOM05D003962 ORTHO05D004714 3.0e-224 783.1 1241 52.4
Cpa.g.sc3.71 Carica papaya HOM05D003962 ORTHO05D004714 7.5e-223 778.5 1267 52.2
FAN06G4230 Fragaria x ananassa HOM05D003962 ORTHO05D004714 9.8e-223 778.1 1269 52.2
TWI23G0430 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 1.3e-222 777.7 1284 49.4
Potri.012G013800 Populus trichocarpa HOM05D003962 ORTHO05D004714 2.8e-222 776.5 1233 49.1
Duzib084G0525 Durio zibethinus HOM05D003962 ORTHO05D004714 4.9e-222 775.8 1236 48.5
FAN10G3613 Fragaria x ananassa HOM05D003962 ORTHO05D004714 6.3e-222 775.4 1269 52.2
FAN06G4429 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.8e-221 773.9 1269 52.0
TWI39G0414 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 2.3e-219 766.9 1266 50.2
Potri.015G014800 Populus trichocarpa HOM05D003962 ORTHO05D004714 1.1e-218 764.6 1236 48.9
FAN01G0781 Fragaria x ananassa HOM05D003962 ORTHO05D004714 5.2e-216 755.7 1278 50.4
RcHm_v2.0_Chr1g0380961 Rosa chinensis HOM05D003962 ORTHO05D004714 2.6e-215 753.4 1261 51.9
Gorai.007G015000 Gossypium raimondii HOM05D003962 ORTHO05D004714 7.0e-213 745.3 1240 50.6
MD07G1290200 Malus domestica HOM05D003962 ORTHO05D004714 2.0e-212 743.8 1280 48.4
FAN03G1461 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.3e-211 741.1 1266 51.3
VMungo1309G1284 Vigna mungo HOM05D003962 ORTHO05D004714 1.3e-211 741.1 1279 46.4
Glyma.04G236700 Glycine max HOM05D003962 ORTHO05D004714 1.8e-208 730.7 1239 48.3
Sabra15G0011900 Salix brachista HOM05D003962 ORTHO05D004714 5.2e-208 729.2 1123 48.2
Sabra12G0018000 Salix brachista HOM05D003962 ORTHO05D004714 3.4e-207 726.5 1262 47.5
Gohir.D11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 1.1e-205 721.5 1241 50.0
TWI14G0330 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 1.1e-205 721.5 1277 47.1
Manes.14G006600 Manihot esculenta HOM05D003962 ORTHO05D004714 6.0e-204 715.7 819 52.9
Glyma.06G127600 Glycine max HOM05D003962 ORTHO05D004714 2.3e-200 703.7 1244 46.7
Manes.06G159800 Manihot esculenta HOM05D003962 ORTHO05D004714 2.6e-199 700.3 1258 46.0
Gohir.A11G014500 Gossypium hirsutum HOM05D003962 ORTHO05D004714 5.4e-197 692.6 1240 48.6
Eucgr.A01465 Eucalyptus grandis HOM05D003962 ORTHO05D004714 2.7e-196 690.3 1238 46.0
GSVIVG01038709001 Vitis vinifera HOM05D003962 ORTHO05D004714 3.5e-196 689.9 1304 50.5
Duzib205G1416 Durio zibethinus HOM05D003962 ORTHO05D004714 3.9e-195 686.4 817 50.8
Gohir.A11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 4.0e-192 676.4 1234 47.6
Ca_16697_v3 Cicer arietinum L. HOM05D003962 ORTHO05D004714 8.7e-187 658.7 1248 42.0
Gohir.D11G014700 Gossypium hirsutum HOM05D003962 ORTHO05D004714 8.7e-187 658.7 1241 46.3
Psat5g078120 Pisum sativum HOM05D003962 ORTHO05D004714 2.4e-184 650.6 1243 44.8
Phvul.009G053600 Phaseolus vulgaris HOM05D003962 ORTHO05D004714 2.9e-182 643.7 1248 46.6
TAR374G0911 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.1e-181 641.7 1265 42.1
arahy.Tifrunner.gnm1.ann1.JYM9I0 Arachis hypogaea HOM05D003962 ORTHO05D004714 5.6e-178 629.4 1243 43.7
Medtr3g091280 Medicago truncatula HOM05D003962 ORTHO05D004714 5.8e-175 619.4 1198 45.2
Nn1g01866 Nelumbo nucifera HOM05D003962 ORTHO05D004714 3.2e-173 613.6 1337 38.4
Lj1g0008504 Lotus japonicus HOM05D003962 ORTHO05D004714 1.2e-172 611.7 1151 46.9
arahy.Tifrunner.gnm1.ann1.897SEY Arachis hypogaea HOM05D003962 ORTHO05D004714 1.6e-169 601.3 1252 43.3
Lalb_Chr08g0240331 Lupinus albus HOM05D003962 ORTHO05D004714 4.5e-167 593.2 1249 43.4
PGR042G1008 Punica granatum HOM05D003962 ORTHO05D004714 9.9e-167 592.0 1046 48.3
TPR.G17287 Trifolium pratense HOM05D003962 ORTHO05D004714 4.2e-165 586.6 1272 42.5
CsaV3_5G000540 Cucumis sativus L. HOM05D003962 ORTHO05D004714 2.6e-159 567.4 1297 38.9
ClCG01G000470 Citrullus lanatus HOM05D003962 ORTHO05D004714 7.6e-159 565.8 1316 38.9
MELO3C005882.2 Cucumis melo HOM05D003962 ORTHO05D004714 1.3e-158 565.1 1305 38.1
Lalb_Chr23g0271551 Lupinus albus HOM05D003962 ORTHO05D004714 3.5e-156 557.0 1231 40.9
Sed0023111 Sechium edule HOM05D003962 ORTHO05D004714 1.3e-155 555.1 1267 38.9
TAR636G0021 Trochodendron aralioides HOM05D003962 ORTHO05D004714 4.1e-152 543.5 1095 44.2
THA.LOC104800296 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 5.7e-146 523.1 1056 44.6
Lalb_Chr11g0066791 Lupinus albus HOM05D003962 ORTHO05D004714 1.4e-144 518.5 1257 41.3
TAR629G3347 Trochodendron aralioides HOM05D003962 ORTHO05D004714 8.5e-142 509.2 795 44.0
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 4.8e-137 493.4 1116 43.7
Nn3g19007 Nelumbo nucifera HOM05D003962 ORTHO05D004714 6.3e-137 493.0 1268 37.8
Dinv37529 Davidia involucrata HOM05D003962 ORTHO05D004714 3.2e-133 480.7 837 39.3
EL10Ac3g05299 Beta vulgaris HOM05D003962 ORTHO05D004714 5.2e-131 473.4 1271 41.3
CSS0043367 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 2.6e-130 471.1 1352 39.3
AT5G53440 Arabidopsis thaliana HOM05D003962 ORTHO05D004714 6.3e-129 466.5 1280 40.3
Sp6g15570 Schrenkiella parvula HOM05D003962 ORTHO05D004714 1.8e-128 464.9 1265 41.8
Aa31sc139G70 Aethionema arabicum HOM05D003962 ORTHO05D004714 6.5e-126 456.4 1057 49.1
Gorai.007G015100 Gossypium raimondii HOM05D003962 ORTHO05D004714 7.2e-125 453.0 487 52.0
AL8G28140 Arabidopsis lyrata HOM05D003962 ORTHO05D004714 1.2e-124 452.2 1295 39.5
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 1.5e-122 445.3 1090 37.3
Carub.0008s1360 Capsella rubella HOM05D003962 ORTHO05D004714 2.6e-122 444.5 1267 40.8
Sed0017272 Sechium edule HOM05D003962 ORTHO05D004714 1.6e-119 435.3 829 37.9
Aqoxy7G00097 Aquilegia oxysepala HOM05D003962 ORTHO05D004714 3.5e-119 434.1 1347 34.4
Thhalv10012484m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 3.8e-118 430.6 1068 43.4
AUR62006109 Chenopodium quinoa HOM05D003962 ORTHO05D004714 1.5e-117 428.7 1263 35.9
THA.LOC104825141 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 1.4e-115 422.2 1001 40.4
CARHR266560 Cardamine hirsuta HOM05D003962 ORTHO05D004714 7.5e-114 416.4 1045 43.3
Lj2A167T45 Lonicera japonica HOM05D003962 ORTHO05D004714 2.2e-113 414.8 1162 42.7
Ah.13g070110 Amaranthus hybridus HOM05D003962 ORTHO05D004714 4.1e-112 410.6 1265 40.1
TAR375G1139 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.2e-111 409.1 707 41.3
CSS0016674 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 2.1e-108 398.3 742 37.2
Cc08_g16110 Coffea canephora HOM05D003962 ORTHO05D004714 1.2e-106 392.5 1367 36.9
Hma1.2p1_0359F.1_g135210 Hydrangea macrophylla HOM05D003962 ORTHO05D004714 2.5e-101 374.8 1420 37.3
AUR62019379 Chenopodium quinoa HOM05D003962 ORTHO05D004714 9.5e-101 372.9 1268 34.4
PSO170G0250 Papaver somniferum HOM05D003962 ORTHO05D004714 4.4e-98 364.0 1079 33.1
MBI06_g08468_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 4.9e-97 360.5 1151 37.8
BcaC01g06252 Brassica carinata HOM05D003962 ORTHO05D004714 1.1e-96 359.4 623 41.4
C03p17680 Brassica napus HOM05D003962 ORTHO05D004714 1.4e-96 359.0 623 41.4
BolC3t14179H Brassica oleracea HOM05D003962 ORTHO05D004714 1.4e-96 359.0 623 41.4
PSO063G5170 Papaver somniferum HOM05D003962 ORTHO05D004714 7.0e-96 356.7 1079 32.7
A03p15150 Brassica napus HOM05D003962 ORTHO05D004714 3.5e-95 354.4 606 41.1
BraA03t10810Z Brassica rapa HOM05D003962 ORTHO05D004714 3.5e-95 354.4 605 41.3
DCAR_029893 Daucus carota HOM05D003962 ORTHO05D004714 3.5e-95 354.4 1293 39.0
BcaNung06205 Brassica carinata HOM05D003962 ORTHO05D004714 4.6e-95 354.0 820 35.5
vmacro11467 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 7.8e-95 353.2 816 34.1
MBI07_g07101_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 1.0e-94 352.8 1070 33.9
PSO135G0074 Papaver somniferum HOM05D003962 ORTHO05D004714 6.6e-94 350.1 643 38.7
Sc19g0000840 Simmondsia chinensis HOM05D003962 ORTHO05D004714 2.5e-93 348.2 1045 38.8
PSO384G0521 Papaver somniferum HOM05D003962 ORTHO05D004714 5.6e-93 347.1 642 38.3
Rhsim02G0244100 Rhododendron simsii HOM05D003962 ORTHO05D004714 7.3e-93 346.7 811 34.4
Actinidia22731 Actinidia chinensis HOM05D003962 ORTHO05D004714 3.6e-92 344.4 786 34.4
PGSC0003DMG400012278 Solanum tuberosum HOM05D003962 ORTHO05D004714 6.2e-92 343.6 1143 39.9
Peaxi162Scf00074g00821 Petunia axillaris HOM05D003962 ORTHO05D004714 5.2e-91 340.5 600 39.3
Sc25g0000880 Simmondsia chinensis HOM05D003962 ORTHO05D004714 1.4e-88 332.4 1029 41.3
Actinidia04199 Actinidia chinensis HOM05D003962 ORTHO05D004714 3.5e-87 327.8 1345 36.6
Migut.A00639 Erythranthe guttata HOM05D003962 ORTHO05D004714 3.5e-87 327.8 1349 35.5
Solyc08g082410.4 Solanum lycopersicum HOM05D003962 ORTHO05D004714 6.0e-87 327.0 1128 41.7
Oeu063516.1 Olea europaea HOM05D003962 ORTHO05D004714 1.3e-86 325.9 821 33.1
CSS0006905 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 1.7e-86 325.5 668 35.6
Ah.07g205820 Amaranthus hybridus HOM05D003962 ORTHO05D004714 8.6e-86 323.2 1343 34.8
Nitab4.5_0002944g0030 Nicotiana tabacum HOM05D003962 ORTHO05D004714 5.6e-85 320.5 1314 35.6
CAN.G1804.9 Capsicum annuum HOM05D003962 ORTHO05D004714 1.2e-84 319.3 1408 34.9
MSTRG.25678 Avicennia marina HOM05D003962 ORTHO05D004714 2.7e-79 301.6 1360 33.8
SalBow1G2835 Salvia bowleyana HOM05D003962 ORTHO05D004714 2.7e-79 301.6 1293 36.1
SalBow1G4038 Salvia bowleyana HOM05D003962 ORTHO05D004714 2.7e-79 301.6 1293 36.1
Rhsim02G0244200 Rhododendron simsii HOM05D003962 ORTHO05D004714 6.0e-79 300.4 897 31.3
Thhalv10026934m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 2.5e-77 295.0 1007 33.3
Nitab4.5_0007367g0070 Nicotiana tabacum HOM05D003962 ORTHO05D004714 1.1e-75 289.7 1271 34.8
Actinidia27315 Actinidia chinensis HOM05D003962 ORTHO05D004714 4.0e-75 287.7 1049 34.8
SHI02385 Sapria himalayana HOM05D003962 ORTHO05D004714 6.8e-75 287.0 457 41.6
Oeu009961.1 Olea europaea HOM05D003962 ORTHO05D004714 9.9e-74 283.1 1272 30.9
Oeu054025.1 Olea europaea HOM05D003962 ORTHO05D004714 3.9e-70 271.2 1270 28.1
MSTRG.13886 Avicennia marina HOM05D003962 ORTHO05D004714 5.3e-67 260.8 1363 34.0
DCAR_006489 Daucus carota HOM05D003962 ORTHO05D004714 8.4e-65 253.4 599 34.2
vmacro11361 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 8.7e-62 243.4 778 29.3
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 4.3e-61 241.1 1357 31.8
SGA_v2.0_scaffold305G47981 Striga asiatica HOM05D003962 ORTHO05D004714 5.6e-61 240.7 828 30.2
ECA246G1296 Erigeron canadensis HOM05D003962 ORTHO05D004714 5.3e-59 234.2 1040 34.9
ATR0602G039 Amborella trichopoda HOM05D003962 ORTHO05D004714 7.6e-58 230.3 651 31.3
Nitab4.5_0006775g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 2.1e-55 222.2 1312 35.1
Prupe.5G120600 Prunus persica HOM05D003962 ORTHO05D004714 2.5e-53 215.3 643 30.8
Oeu058004.1 Olea europaea HOM05D003962 ORTHO05D004714 2.2e-49 202.2 945 41.8
Zm00001eb359440 Zea mays HOM05D003962 ORTHO05D004714 6.4e-49 200.7 614 30.6
Os01g0655400 Oryza sativa ssp. japonica HOM05D003962 ORTHO05D004714 3.2e-48 198.4 626 30.4
HanXRQChr06g0166431 Helianthus annuus HOM05D003962 ORTHO05D004714 2.7e-47 195.3 554 31.0
HanXRQChr17g0534811 Helianthus annuus HOM05D003962 ORTHO05D004714 5.7e-45 187.6 1065 32.2
Nitab4.5_0001210g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 1.6e-39 169.5 1279 34.6
Zm00001eb158050 Zea mays HOM05D003962 ORTHO05D004714 9.0e-35 153.7 586 29.7
CDE10G0926 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 7.7e-34 150.6 639 27.2
CDE10G1062 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 7.7e-34 150.6 648 27.9
SEGI_14221 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 4.3e-29 134.8 588 28.4
Lsat_1_v5_gn_3_10880 Lactuca sativa HOM05D003962 ORTHO05D004714 7.4e-29 134.0 1135 31.8
TAR375G1118 Trochodendron aralioides HOM05D003962 ORTHO05D004714 6.3e-28 131.0 559 33.6
unitig_88.g27642 Utricularia gibba HOM05D003962 ORTHO05D004714 8.2e-28 130.6 550 28.5
CDE09G1087 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 2.4e-27 129.0 598 26.9
HPP92_024026 Vanilla planifolia HOM05D003962 ORTHO05D004714 2.6e-26 125.6 1061 27.6
unitig_0.g2842 Utricularia gibba HOM05D003962 ORTHO05D004714 3.0e-22 112.1 942 32.3
CDE02G1812 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 3.9e-22 111.7 576 25.9
ECA233G2741 Erigeron canadensis HOM05D003962 ORTHO05D004714 1.1e-21 110.2 391 27.9
TAR629G3239 Trochodendron aralioides HOM05D003962 ORTHO05D004714 4.8e-20 104.8 186 47.8
SHI02387 Sapria himalayana HOM05D003962 ORTHO05D004714 1.0e-17 97.1 159 48.4
ATR1089G043 Amborella trichopoda HOM05D003962 ORTHO05D004714 1.9e-16 92.8 638 27.1
SEGI_41344 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 3.2e-16 92.0 569 26.7
vmacro11466 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 1.0e-14 87.0 332 34.3
vmacro11359 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 1.3e-12 80.1 186 28.5
vmacro11465 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 1.3e-12 80.1 186 28.5
C06p30100 Brassica napus HOM05D003962 ORTHO05D032564 1.7e-12 79.7 161 38.5
BolC6t38171H Brassica oleracea HOM05D003962 ORTHO05D032564 1.7e-12 79.7 161 38.5
BcaC08g45378 Brassica carinata HOM05D003962 ORTHO05D032564 3.7e-12 78.6 105 48.6
vmacro11360 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 1.6e-10 73.2 370 30.3
HanXRQChr07g0190851 Helianthus annuus HOM05D003962 ORTHO05D004714 5.0e-09 68.2 236 27.1
SHI02386 Sapria himalayana HOM05D003962 ORTHO05D004714 3.0e-06 58.9 87 50.6


User provided reference genes

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