Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016247 Carpinus fangiana HOM05D022004 ORTHO05D028610 4.0e-78 294.7 145 100.0
Haze_21950 Corylus avellana HOM05D022004 ORTHO05D000594 4.6e-66 254.6 144 86.8
Haze_00194 Corylus avellana HOM05D000896 ORTHO05D000594 5.3e-22 108.2 136 44.9
Cfa016249 Carpinus fangiana HOM05D000896 ORTHO05D000594 1.1e-19 100.5 136 42.6
COL.COLO4_23622 Corchorus olitorius HOM05D000896 ORTHO05D000594 6.9e-14 81.3 144 32.6
COL.COLO4_20383 Corchorus olitorius HOM05D000896 ORTHO05D000594 1.2e-13 80.5 144 32.6
Cfa016248 Carpinus fangiana HOM05D000896 ORTHO05D000594 1.0e-12 77.4 127 31.5
QL03p040822 Quercus lobata HOM05D000896 ORTHO05D000594 1.3e-12 77.0 128 35.2
Haze_00192 Corylus avellana HOM05D000896 ORTHO05D000594 1.7e-12 76.6 113 43.4
QL03p040404 Quercus lobata HOM05D000896 ORTHO05D000594 1.7e-12 76.6 128 35.2
Dinv21551 Davidia involucrata HOM05D000896 ORTHO05D000594 3.8e-12 75.5 132 32.6
Cpa.g.sc13.154 Carica papaya HOM05D000896 ORTHO05D000594 5.0e-12 75.1 131 28.2
Cfa018819 Carpinus fangiana HOM05D022004 ORTHO05D028610 1.4e-11 73.6 140 37.1
Gohir.A01G161180 Gossypium hirsutum HOM05D000896 ORTHO05D000594 3.2e-11 72.4 141 33.3
Duzib251G0081 Durio zibethinus HOM05D000896 ORTHO05D000594 5.5e-11 71.6 142 33.8
TWI34G0441 Tripterygium wilfordii HOM05D000896 ORTHO05D000594 5.5e-11 71.6 145 29.0
Duzib251G0257 Durio zibethinus HOM05D000896 ORTHO05D000594 9.4e-11 70.9 140 33.6
Cfa018816 Carpinus fangiana HOM05D022004 ORTHO05D028610 1.2e-10 70.5 139 35.3
Gohir.D13G231533 Gossypium hirsutum HOM05D000896 ORTHO05D000594 1.2e-10 70.5 141 31.9
Gohir.D13G231566 Gossypium hirsutum HOM05D000896 ORTHO05D000594 1.2e-10 70.5 141 32.6
Phvul.008G194000 Phaseolus vulgaris HOM05D000896 ORTHO05D000594 1.2e-10 70.5 144 29.9
Sopen11g001210 Solanum pennellii HOM05D000896 ORTHO05D000594 1.2e-10 70.5 122 35.2
Gohir.A13G226166 Gossypium hirsutum HOM05D000896 ORTHO05D000594 2.1e-10 69.7 126 33.3
Thecc.03G197000 Theobroma cacao HOM05D000896 ORTHO05D000594 2.1e-10 69.7 145 29.7
Dinv40965 Davidia involucrata HOM05D000896 ORTHO05D000594 3.6e-10 68.9 138 32.6
Duzib251G0772 Durio zibethinus HOM05D000896 ORTHO05D000594 4.6e-10 68.6 140 32.9
Glyma.02G291400 Glycine max HOM05D000896 ORTHO05D000594 4.6e-10 68.6 133 33.1
FvH4_5g16202 Fragaria vesca HOM05D000896 ORTHO05D000594 6.1e-10 68.2 124 32.3
FAN08G3054 Fragaria x ananassa HOM05D000896 ORTHO05D000594 7.9e-10 67.8 124 32.3
PGSC0003DMG400035412 Solanum tuberosum HOM05D000896 ORTHO05D000594 7.9e-10 67.8 121 32.2
QL11p026956 Quercus lobata HOM05D000896 ORTHO05D000594 1.0e-09 67.4 112 33.9
TAR375G0528 Trochodendron aralioides HOM05D000896 ORTHO05D000594 1.0e-09 67.4 138 29.0
Gohir.A02G044702 Gossypium hirsutum HOM05D000896 ORTHO05D000594 1.4e-09 67.0 129 31.0
Gohir.A02G048201 Gossypium hirsutum HOM05D000896 ORTHO05D000594 1.8e-09 66.6 129 31.0
Nitab4.5_0001681g0040 Nicotiana tabacum HOM05D000896 ORTHO05D000594 2.3e-09 66.2 134 29.9
PGSC0003DMG400006296 Solanum tuberosum HOM05D000011 ORTHO05D007164 2.3e-09 66.2 137 31.4
Cpa.g.sc3.72 Carica papaya HOM05D000896 ORTHO05D000594 3.0e-09 65.9 128 25.0
Phvul.008G266500 Phaseolus vulgaris HOM05D000896 ORTHO05D000594 3.9e-09 65.5 143 26.6
Cfa004691 Carpinus fangiana HOM05D000896 ORTHO05D000594 5.1e-09 65.1 147 27.2
Gohir.D01G148400 Gossypium hirsutum HOM05D000896 ORTHO05D000594 5.1e-09 65.1 141 31.9
Phvul.006G044100 Phaseolus vulgaris HOM05D000896 ORTHO05D000594 5.1e-09 65.1 133 32.3
FAN01G0184 Fragaria x ananassa HOM05D000896 ORTHO05D000594 6.7e-09 64.7 119 30.3
FAN13G1468 Fragaria x ananassa HOM05D000896 ORTHO05D000594 6.7e-09 64.7 124 31.5
FAN13G2450 Fragaria x ananassa HOM05D000896 ORTHO05D000594 6.7e-09 64.7 124 31.5
Gohir.D11G314050 Gossypium hirsutum HOM05D000896 ORTHO05D000594 6.7e-09 64.7 126 32.5
Manes.14G006500 Manihot esculenta HOM05D000896 ORTHO05D000594 6.7e-09 64.7 138 23.2
Nitab4.5_0001582g0060 Nicotiana tabacum HOM05D000896 ORTHO05D000594 6.7e-09 64.7 134 29.9
FAN06G0415 Fragaria x ananassa HOM05D000896 ORTHO05D000594 8.8e-09 64.3 114 28.9
FAN06G5054 Fragaria x ananassa HOM05D000896 ORTHO05D000594 8.8e-09 64.3 114 28.9
Gohir.A07G201750 Gossypium hirsutum HOM05D000896 ORTHO05D000594 8.8e-09 64.3 129 30.2
Gohir.D02G050732 Gossypium hirsutum HOM05D000896 ORTHO05D000594 8.8e-09 64.3 129 30.2
Gorai.005G056000 Gossypium raimondii HOM05D000896 ORTHO05D000594 8.8e-09 64.3 129 30.2
Cfa002712 Carpinus fangiana HOM05D000896 ORTHO05D000594 1.1e-08 63.9 127 26.8
HanXRQChr08g0217051 Helianthus annuus HOM05D000896 ORTHO05D000594 1.1e-08 63.9 129 28.7
Lj4g0007022 Lotus japonicus HOM05D000896 ORTHO05D000594 1.1e-08 63.9 139 29.5
Oeu027562.1 Olea europaea HOM05D000896 ORTHO05D000594 1.1e-08 63.9 146 25.3
Gohir.D02G053350 Gossypium hirsutum HOM05D000896 ORTHO05D000594 1.5e-08 63.5 129 30.2
PGSC0003DMG400043436 Solanum tuberosum HOM05D000896 ORTHO05D000594 1.5e-08 63.5 138 29.7
Duzib138G1815 Durio zibethinus HOM05D000896 ORTHO05D000594 2.0e-08 63.2 130 26.9
FvH4_7g31340 Fragaria vesca HOM05D000896 ORTHO05D000594 2.0e-08 63.2 110 30.0
Manes.09G146800 Manihot esculenta HOM05D000896 ORTHO05D000594 2.0e-08 63.2 127 31.5
QL05p083988 Quercus lobata HOM05D000896 ORTHO05D000594 2.0e-08 63.2 125 28.0
CAN.G1140.8 Capsicum annuum HOM05D000896 ORTHO05D000594 2.5e-08 62.8 120 35.8
FAN03G0356 Fragaria x ananassa HOM05D000896 ORTHO05D000594 2.5e-08 62.8 120 30.0
FAN04G3038 Fragaria x ananassa HOM05D000896 ORTHO05D000594 2.5e-08 62.8 124 30.6
PGR119G0007 Punica granatum HOM05D000896 ORTHO05D000594 2.5e-08 62.8 127 28.3
Cfa002709 Carpinus fangiana HOM05D000896 ORTHO05D000594 3.3e-08 62.4 127 26.0
FAN18G1708 Fragaria x ananassa HOM05D000896 ORTHO05D000594 3.3e-08 62.4 124 29.0
Gohir.D02G050666 Gossypium hirsutum HOM05D000896 ORTHO05D000594 3.3e-08 62.4 129 29.5
Medtr5g007910 Medicago truncatula HOM05D000896 ORTHO05D000594 3.3e-08 62.4 136 26.5
Oeu027561.1 Olea europaea HOM05D000896 ORTHO05D000594 3.3e-08 62.4 123 26.8
Prupe.2G159700 Prunus persica HOM05D000896 ORTHO05D000594 3.3e-08 62.4 133 24.8
Sed0008121 Sechium edule HOM05D000896 ORTHO05D000594 3.3e-08 62.4 131 29.0
Cfa004709 Carpinus fangiana HOM05D000896 ORTHO05D000594 4.3e-08 62.0 147 26.5
Haze_07195 Corylus avellana HOM05D022004 ORTHO05D028610 4.3e-08 62.0 141 34.8
Oeu028491.1 Olea europaea HOM05D000896 ORTHO05D000594 4.3e-08 62.0 140 29.3
Psat0s5759g0040 Pisum sativum HOM05D000896 ORTHO05D000594 4.3e-08 62.0 142 27.5
Psat4g122800 Pisum sativum HOM05D000896 ORTHO05D000594 4.3e-08 62.0 142 27.5
Sed0019902 Sechium edule HOM05D000896 ORTHO05D000594 4.3e-08 62.0 131 28.2
PGSC0003DMG400034363 Solanum tuberosum HOM05D000896 ORTHO05D000594 4.3e-08 62.0 125 35.2
Manes.09G155401 Manihot esculenta HOM05D000896 ORTHO05D000594 5.7e-08 61.6 142 26.8
Oeu027558.1 Olea europaea HOM05D000896 ORTHO05D000594 5.7e-08 61.6 146 26.7
Prupe.1G539700 Prunus persica HOM05D031150 ORTHO05D000594 5.7e-08 61.6 145 29.0
Thecc.03G196900 Theobroma cacao HOM05D000896 ORTHO05D000594 5.7e-08 61.6 145 26.9
Ca_13757_v3 Cicer arietinum L. HOM05D000896 ORTHO05D000594 7.4e-08 61.2 116 32.8
Peaxi162Scf00765g00215 Petunia axillaris HOM05D000896 ORTHO05D000594 7.4e-08 61.2 136 30.1
PGR004G0789 Punica granatum HOM05D000896 ORTHO05D000594 7.4e-08 61.2 127 27.6
Ca_23866_v3 Cicer arietinum L. HOM05D000896 ORTHO05D000594 9.7e-08 60.8 116 32.8
Gorai.013G062600 Gossypium raimondii HOM05D000896 ORTHO05D000594 9.7e-08 60.8 133 30.1
BraA10t42685Z Brassica rapa HOM05D000896 ORTHO05D000594 1.3e-07 60.5 118 31.4
Gohir.D07G208050 Gossypium hirsutum HOM05D000896 ORTHO05D000594 1.3e-07 60.5 118 30.5
Oeu009475.1 Olea europaea HOM05D000896 ORTHO05D000594 1.3e-07 60.5 147 23.1
QL11p027123 Quercus lobata HOM05D000896 ORTHO05D000594 1.3e-07 60.5 131 26.7
BcaC05g24385 Brassica carinata HOM05D000896 ORTHO05D000594 1.7e-07 60.1 118 30.5
C05p03790 Brassica napus HOM05D000896 ORTHO05D000594 1.7e-07 60.1 118 30.5
BolC5t29156H Brassica oleracea HOM05D000896 ORTHO05D000594 1.7e-07 60.1 118 30.5
FvH4_5g16210 Fragaria vesca HOM05D000896 ORTHO05D000594 1.7e-07 60.1 112 31.2
FAN18G2330 Fragaria x ananassa HOM05D000896 ORTHO05D013425 1.7e-07 60.1 112 31.2
Gohir.A01G163850 Gossypium hirsutum HOM05D000896 ORTHO05D000594 2.2e-07 59.7 124 32.3
Actinidia23083 Actinidia chinensis HOM05D000896 ORTHO05D000594 2.8e-07 59.3 145 29.7
FAN01G0387 Fragaria x ananassa HOM05D016935 ORTHO05D000594 2.8e-07 59.3 110 29.1
FAN10G0677 Fragaria x ananassa HOM05D016935 ORTHO05D000594 2.8e-07 59.3 110 29.1
Glyma.01G187000 Glycine max HOM05D000896 ORTHO05D000594 2.8e-07 59.3 124 30.6
Glyma.03G105900 Glycine max HOM05D000896 ORTHO05D000594 2.8e-07 59.3 142 30.3
Peaxi162Scf01732g00010 Petunia axillaris HOM05D000896 ORTHO05D000594 2.8e-07 59.3 151 26.5
Phvul.010G000400 Phaseolus vulgaris HOM05D000896 ORTHO05D000594 2.8e-07 59.3 124 30.6
BraA04t17973Z Brassica rapa HOM05D000896 ORTHO05D000594 3.7e-07 58.9 149 24.8
FAN03G1203 Fragaria x ananassa HOM05D016935 ORTHO05D000594 3.7e-07 58.9 110 29.1
Lalb_Chr09g0329091 Lupinus albus HOM05D000896 ORTHO05D000594 3.7e-07 58.9 130 30.8
Psat4g124560 Pisum sativum HOM05D000896 ORTHO05D000594 3.7e-07 58.9 143 26.6
A04p24380 Brassica napus HOM05D000896 ORTHO05D000594 4.8e-07 58.5 149 25.5
A04p24520 Brassica napus HOM05D000896 ORTHO05D000594 4.8e-07 58.5 149 24.8
MELO3C010943.2 Cucumis melo HOM05D000896 ORTHO05D000594 4.8e-07 58.5 124 29.8
FAN13G2118 Fragaria x ananassa HOM05D000896 ORTHO05D000594 4.8e-07 58.5 112 31.2
FAN13G2868 Fragaria x ananassa HOM05D000896 ORTHO05D013425 4.8e-07 58.5 112 31.2
Rhsim02G0212000 Rhododendron simsii HOM05D000896 ORTHO05D000594 4.8e-07 58.5 145 27.6
Sopen03g038390 Solanum pennellii HOM05D000896 ORTHO05D000594 4.8e-07 58.5 143 22.4
Actinidia04066 Actinidia chinensis HOM05D000896 ORTHO05D000594 6.3e-07 58.2 144 30.6
Actinidia23084 Actinidia chinensis HOM05D000896 ORTHO05D000594 6.3e-07 58.2 145 29.7
DCAR_004967 Daucus carota HOM05D027180 ORTHO05D029192 6.3e-07 58.2 123 34.1
A10p04160 Brassica napus HOM05D000896 ORTHO05D000594 8.2e-07 57.8 118 29.7
Duzib177G1127 Durio zibethinus HOM05D000896 ORTHO05D000594 8.2e-07 57.8 134 26.9
FAN06G3056 Fragaria x ananassa HOM05D016935 ORTHO05D000594 8.2e-07 57.8 117 27.4
Solyc03g119560.1 Solanum lycopersicum HOM05D000896 ORTHO05D000594 8.2e-07 57.8 144 25.0
BcaC02g07964 Brassica carinata HOM05D000896 ORTHO05D000594 1.1e-06 57.4 150 25.3
AUR62018640 Chenopodium quinoa HOM05D000403 ORTHO05D009445 1.4e-06 57.0 131 26.0
FvH4_7g31730 Fragaria vesca HOM05D016935 ORTHO05D000594 1.4e-06 57.0 110 28.2
FAN10G2619 Fragaria x ananassa HOM05D016935 ORTHO05D000594 1.4e-06 57.0 110 28.2
Peaxi162Scf00177g00063 Petunia axillaris HOM05D000896 ORTHO05D000594 1.4e-06 57.0 139 27.3
QL03p038238 Quercus lobata HOM05D000896 ORTHO05D000594 1.4e-06 57.0 130 26.2
Atru.chr3.2653 Acer truncatum HOM05D000874 ORTHO05D001049 1.8e-06 56.6 126 32.5
Duzib177G0732 Durio zibethinus HOM05D000896 ORTHO05D000594 1.8e-06 56.6 133 26.3
RcHm_v2.0_Chr1g0380921 Rosa chinensis HOM05D000896 ORTHO05D000594 1.8e-06 56.6 117 26.5
BcaB02g06859 Brassica carinata HOM05D000896 ORTHO05D000594 3.1e-06 55.8 119 29.4
BraA04t17955Z Brassica rapa HOM05D000896 ORTHO05D000594 3.1e-06 55.8 149 24.8
CsaV3_5G027950 Cucumis sativus L. HOM05D000896 ORTHO05D000594 3.1e-06 55.8 135 28.1
PGR044G0072 Punica granatum HOM05D000896 ORTHO05D000594 3.1e-06 55.8 129 27.9
Atru.chr3.2659 Acer truncatum HOM05D000896 ORTHO05D000594 4.1e-06 55.5 122 32.0
Cfa004777 Carpinus fangiana HOM05D000896 ORTHO05D000594 4.1e-06 55.5 135 28.1
CsaV3_2G028710 Cucumis sativus L. HOM05D000896 ORTHO05D000594 4.1e-06 55.5 134 28.4
Phvul.006G044300 Phaseolus vulgaris HOM05D000896 ORTHO05D000594 4.1e-06 55.5 136 27.9
C04p61400 Brassica napus HOM05D000896 ORTHO05D000594 5.3e-06 55.1 147 24.5
Migut.G01061 Erythranthe guttata HOM05D000896 ORTHO05D000594 5.3e-06 55.1 150 26.7
Migut.G01064 Erythranthe guttata HOM05D000896 ORTHO05D000594 5.3e-06 55.1 138 28.3
SGA_v2.0_scaffold257G45696 Striga asiatica HOM05D000896 ORTHO05D000594 5.3e-06 55.1 135 25.9
DCAR_025815 Daucus carota HOM05D000896 ORTHO05D000594 6.9e-06 54.7 132 28.0
Migut.N01666 Erythranthe guttata HOM05D018190 ORTHO05D011718 6.9e-06 54.7 133 31.6
FvH4_7g12330 Fragaria vesca HOM05D000896 ORTHO05D000594 6.9e-06 54.7 133 21.8
FAN03G1413 Fragaria x ananassa HOM05D000896 ORTHO05D000594 6.9e-06 54.7 133 21.8
FAN06G0727 Fragaria x ananassa HOM05D000896 ORTHO05D000594 6.9e-06 54.7 133 21.8
FAN06G5008 Fragaria x ananassa HOM05D000896 ORTHO05D000594 6.9e-06 54.7 133 21.8
FAN08G1294 Fragaria x ananassa HOM05D000896 ORTHO05D000594 6.9e-06 54.7 112 29.5
FAN10G0733 Fragaria x ananassa HOM05D000896 ORTHO05D000594 6.9e-06 54.7 133 21.8
FAN10G2906 Fragaria x ananassa HOM05D000896 ORTHO05D000594 6.9e-06 54.7 133 21.8
TWI34G1439 Tripterygium wilfordii HOM05D000896 ORTHO05D000594 6.9e-06 54.7 127 25.2
TAR168G0001 Trochodendron aralioides HOM05D000896 ORTHO05D000594 6.9e-06 54.7 140 25.7
TAR636G1058 Trochodendron aralioides HOM05D000896 ORTHO05D000594 6.9e-06 54.7 140 25.7
BcaC04g22224 Brassica carinata HOM05D000896 ORTHO05D000594 9.1e-06 54.3 120 32.5
Cpa.g.sc4.105 Carica papaya HOM05D000896 ORTHO05D000594 9.1e-06 54.3 140 28.6
FAN01G2558 Fragaria x ananassa HOM05D000896 ORTHO05D000594 9.1e-06 54.3 133 21.8
Glyma.11G055000 Glycine max HOM05D000896 ORTHO05D000594 9.1e-06 54.3 133 30.1
Gohir.A12G043560 Gossypium hirsutum HOM05D000896 ORTHO05D000594 9.1e-06 54.3 124 27.4
Gohir.A12G043720 Gossypium hirsutum HOM05D000896 ORTHO05D000594 9.1e-06 54.3 124 27.4


User provided reference genes

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