Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016245 Carpinus fangiana HOM05D002733 ORTHO05D003856 6.5e-90 334.0 158 100.0
Haze_00185 Corylus avellana HOM05D002733 ORTHO05D003856 3.0e-55 218.8 158 69.0
Haze_00196 Corylus avellana HOM05D002733 ORTHO05D003856 1.1e-54 216.9 140 74.3
Cfa016244 Carpinus fangiana HOM05D002733 ORTHO05D003856 5.5e-41 171.4 150 57.3
Haze_00197 Corylus avellana HOM05D002733 ORTHO05D003856 8.9e-31 137.5 143 50.3
Haze_23259 Corylus avellana HOM05D002733 ORTHO05D003856 6.4e-29 131.3 130 48.5
Cfa009897 Carpinus fangiana HOM05D002733 ORTHO05D003856 1.1e-28 130.6 130 47.7
FAN19G2118 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.1e-28 130.6 131 46.6
Ciclev10010395m.g Citrus clementina HOM05D002733 ORTHO05D003856 5.4e-28 128.3 150 44.7
FvH4_1g16231 Fragaria vesca HOM05D002733 ORTHO05D003856 1.2e-27 127.1 134 44.8
FAN23G1485 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.6e-27 126.7 132 45.5
FAN23G1126 Fragaria x ananassa HOM05D002733 ORTHO05D003856 2.7e-27 125.9 126 47.6
FvH4_1g24261 Fragaria vesca HOM05D002733 ORTHO05D003856 3.5e-27 125.6 126 47.6
FAN26G1179 Fragaria x ananassa HOM05D002733 ORTHO05D003856 3.5e-27 125.6 126 47.6
CiPaw.03G014700 Carya illinoinensis HOM05D002733 ORTHO05D003856 4.6e-27 125.2 123 47.2
Gohir.D06G064250 Gossypium hirsutum HOM05D002733 ORTHO05D003856 4.6e-27 125.2 131 45.8
Gorai.010G075000 Gossypium raimondii HOM05D002733 ORTHO05D003856 4.6e-27 125.2 131 45.8
RcHm_v2.0_Chr7g0192641 Rosa chinensis HOM05D002733 ORTHO05D003856 4.6e-27 125.2 126 48.4
Cpa.g.sc81.85 Carica papaya HOM05D002733 ORTHO05D003856 5.9e-27 124.8 127 46.5
FAN28G1642 Fragaria x ananassa HOM05D000949 ORTHO05D001276 5.9e-27 124.8 126 47.6
CiPaw.03G015000 Carya illinoinensis HOM05D002733 ORTHO05D003856 7.8e-27 124.4 125 46.4
FvH4_5g06160 Fragaria vesca HOM05D002733 ORTHO05D003856 7.8e-27 124.4 126 49.2
FAN13G0375 Fragaria x ananassa HOM05D002733 ORTHO05D003856 7.8e-27 124.4 126 49.2
Prupe.7G223900 Prunus persica HOM05D002733 ORTHO05D003856 7.8e-27 124.4 126 46.0
FAN18G0094 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.3e-26 123.6 126 49.2
Manes.03G176200 Manihot esculenta HOM05D002733 ORTHO05D003856 1.3e-26 123.6 127 45.7
Manes.03G176000 Manihot esculenta HOM05D002733 ORTHO05D003856 1.7e-26 123.2 127 45.7
Duzib213G0038 Durio zibethinus HOM05D002733 ORTHO05D003856 2.3e-26 122.9 131 45.8
Thecc.07G171000 Theobroma cacao HOM05D002733 ORTHO05D003856 2.3e-26 122.9 130 44.6
RcHm_v2.0_Chr2g0120751 Rosa chinensis HOM05D002733 ORTHO05D003856 3.0e-26 122.5 154 42.2
Prupe.7G223800 Prunus persica HOM05D002733 ORTHO05D003856 3.9e-26 122.1 126 45.2
Gohir.A06G065650 Gossypium hirsutum HOM05D002733 ORTHO05D003856 5.0e-26 121.7 131 44.3
Duzib168G2229 Durio zibethinus HOM05D002733 ORTHO05D003856 1.5e-25 120.2 126 46.8
Thecc.09G104200 Theobroma cacao HOM05D002733 ORTHO05D003856 1.5e-25 120.2 156 41.0
CiPaw.03G015300 Carya illinoinensis HOM05D002733 ORTHO05D003856 1.9e-25 119.8 125 45.6
Potri.001G397100 Populus trichocarpa HOM05D002733 ORTHO05D003856 1.9e-25 119.8 130 44.6
Duzib213G1035 Durio zibethinus HOM05D002733 ORTHO05D003856 4.3e-25 118.6 128 46.1
Hma1.2p1_1080F.1_g255020 Hydrangea macrophylla HOM05D002733 ORTHO05D003856 4.3e-25 118.6 130 42.3
Sabra16G0260100 Salix brachista HOM05D002733 ORTHO05D003856 9.5e-25 117.5 131 43.5
COL.COLO4_34789 Corchorus olitorius HOM05D002733 ORTHO05D003856 1.6e-24 116.7 126 46.0
MELO3C004101.2 Cucumis melo HOM05D002733 ORTHO05D003856 1.6e-24 116.7 127 44.9
CSS0001293 Camellia sinensis var. sinensis HOM05D002733 ORTHO05D003856 2.1e-24 116.3 124 45.2
CiPaw.03G014800 Carya illinoinensis HOM05D002733 ORTHO05D003856 2.8e-24 115.9 127 44.9
Actinidia20408 Actinidia chinensis HOM05D002733 ORTHO05D003856 6.2e-24 114.8 132 43.9
CsaV3_3G004840 Cucumis sativus L. HOM05D002733 ORTHO05D003856 8.0e-24 114.4 123 43.1
Ciclev10007038m.g Citrus clementina HOM05D002733 ORTHO05D003856 1.4e-23 113.6 131 43.5
Glyma.04G133200 Glycine max HOM05D002733 ORTHO05D003856 4.0e-23 112.1 131 38.9
QL02p042807 Quercus lobata HOM05D002733 ORTHO05D003856 6.8e-23 111.3 126 49.2
Sed0022151 Sechium edule HOM05D002733 ORTHO05D003856 8.9e-23 110.9 123 43.9
MD00G1107900 Malus domestica HOM05D002733 ORTHO05D003856 2.0e-22 109.8 149 40.9
MD02G1059300 Malus domestica HOM05D002733 ORTHO05D003856 3.4e-22 109.0 126 44.4
QL02p042555 Quercus lobata HOM05D002733 ORTHO05D003856 3.4e-22 109.0 126 48.4
Lj1g0000886 Lotus japonicus HOM05D002733 ORTHO05D003856 5.8e-22 108.2 124 37.9
Lj3g0006952 Lotus japonicus HOM05D002733 ORTHO05D003856 9.8e-22 107.5 125 39.2
Actinidia09441 Actinidia chinensis HOM05D002733 ORTHO05D003856 1.3e-21 107.1 127 41.7
TPR.G1412 Trifolium pratense HOM05D002733 ORTHO05D003856 2.9e-21 105.9 131 38.2
Sopen12g003260 Solanum pennellii HOM05D002733 ORTHO05D003856 3.7e-21 105.5 154 35.7
CAN.G1774.3 Capsicum annuum HOM05D002733 ORTHO05D003856 6.4e-21 104.8 129 35.7
DCAR_003269 Daucus carota HOM05D002733 ORTHO05D003856 6.4e-21 104.8 126 42.1
Solyc12g007300.1 Solanum lycopersicum HOM05D002733 ORTHO05D003856 6.4e-21 104.8 149 36.2
Sed0027145 Sechium edule HOM05D002733 ORTHO05D003856 5.4e-20 101.7 134 38.8
MD15G1316300 Malus domestica HOM05D002733 ORTHO05D003856 9.2e-20 100.9 126 41.3
Prupe.7G224000 Prunus persica HOM05D002733 ORTHO05D003856 9.2e-20 100.9 126 40.5
Sed0017653 Sechium edule HOM05D002733 ORTHO05D003856 9.2e-20 100.9 151 37.1
VMungo1080G0152 Vigna mungo HOM05D002733 ORTHO05D003856 1.2e-19 100.5 126 38.1
PGSC0003DMG400000368 Solanum tuberosum HOM05D002733 ORTHO05D003856 1.6e-19 100.1 122 37.7
DCAR_003268 Daucus carota HOM05D002733 ORTHO05D003856 2.0e-19 99.8 137 38.7
TPR.G1447 Trifolium pratense HOM05D002733 ORTHO05D003856 2.0e-19 99.8 132 38.6
VMungo1080G0686 Vigna mungo HOM05D002733 ORTHO05D003856 2.0e-19 99.8 129 35.7
Rhsim05G0042200 Rhododendron simsii HOM05D002733 ORTHO05D003856 2.7e-19 99.4 129 40.3
TPR.G8024 Trifolium pratense HOM05D002733 ORTHO05D003856 2.7e-19 99.4 126 38.1
DCAR_014131 Daucus carota HOM05D002733 ORTHO05D003856 3.5e-19 99.0 127 41.7
Eucgr.C01014 Eucalyptus grandis HOM05D002733 ORTHO05D003856 3.5e-19 99.0 112 40.2
Phvul.005G031300 Phaseolus vulgaris HOM05D002733 ORTHO05D003856 3.5e-19 99.0 130 35.4
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 3.5e-19 99.0 116 38.8
Nitab4.5_0001888g0040 Nicotiana tabacum HOM05D002733 ORTHO05D003856 1.3e-18 97.1 130 38.5
Eucgr.L02178 Eucalyptus grandis HOM05D002733 ORTHO05D003856 1.7e-18 96.7 128 35.9
TPR.G12039 Trifolium pratense HOM05D002733 ORTHO05D003856 1.7e-18 96.7 128 35.9
Nitab4.5_0000316g0140 Nicotiana tabacum HOM05D002733 ORTHO05D003856 2.3e-18 96.3 130 38.5
Peaxi162Scf00023g00136 Petunia axillaris HOM05D002733 ORTHO05D003856 3.0e-18 95.9 130 36.9
TPR.G1395 Trifolium pratense HOM05D002733 ORTHO05D003856 3.9e-18 95.5 127 36.2
CiPaw.03G015100 Carya illinoinensis HOM05D002733 ORTHO05D003856 1.1e-17 94.0 127 38.6
Medtr0267s0030 Medicago truncatula HOM05D002733 ORTHO05D003856 1.1e-17 94.0 133 36.8
Medtr3g013810 Medicago truncatula HOM05D002733 ORTHO05D003856 1.1e-17 94.0 125 36.8
Aa31LG7G1520 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.5e-17 92.8 109 41.3
Aa31LG8G17140 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.5e-17 92.8 130 38.5
Medtr3g013920 Medicago truncatula HOM05D002733 ORTHO05D003856 2.5e-17 92.8 125 36.8
DCAR_028226 Daucus carota HOM05D002733 ORTHO05D003856 4.3e-17 92.0 125 36.8
Sp4g22050 Schrenkiella parvula HOM05D002733 ORTHO05D003856 4.3e-17 92.0 127 37.0
Medtr3g013820 Medicago truncatula HOM05D002733 ORTHO05D003856 5.6e-17 91.7 125 36.0
Medtr3g013900 Medicago truncatula HOM05D002733 ORTHO05D003856 7.3e-17 91.3 125 36.0
QL01p018928 Quercus lobata HOM05D002733 ORTHO05D003856 1.2e-16 90.5 134 38.8
Aa31LG8G17170 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.1e-16 89.7 109 40.4
AL4G37790 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 2.1e-16 89.7 136 34.6
Aa31LG8G17220 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.8e-16 89.4 161 32.9
Aa31LG3G6410 Aethionema arabicum HOM05D002733 ORTHO05D003856 6.2e-16 88.2 121 38.0
QL01p018935 Quercus lobata HOM05D002733 ORTHO05D003856 6.2e-16 88.2 133 38.3
Sp5g18240 Schrenkiella parvula HOM05D002733 ORTHO05D003856 6.2e-16 88.2 112 39.3
Sp4g22450 Schrenkiella parvula HOM05D002733 ORTHO05D003856 8.1e-16 87.8 112 39.3
Aa31LG8G11380 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.8e-15 86.7 149 32.9
COL.COLO4_32232 Corchorus olitorius HOM05D002733 ORTHO05D003856 1.8e-15 86.7 131 40.5
Peaxi162Scf00665g00148 Petunia axillaris HOM05D002733 ORTHO05D003856 1.8e-15 86.7 128 39.1
Aa31LG7G1530 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.3e-15 86.3 107 38.3
Peaxi162Scf00665g00126 Petunia axillaris HOM05D002733 ORTHO05D003856 4.0e-15 85.5 108 38.0
Aa31LG8G17160 Aethionema arabicum HOM05D002733 ORTHO05D003856 6.8e-15 84.7 107 38.3
QL01p018939 Quercus lobata HOM05D002733 ORTHO05D003856 8.9e-15 84.3 133 36.1
Aa31LG8G17210 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.5e-14 83.6 131 35.1
BolC3t15022H Brassica oleracea HOM05D002733 ORTHO05D003856 1.5e-14 83.6 129 34.1
BcaB02g09048 Brassica carinata HOM05D002733 ORTHO05D003856 2.6e-14 82.8 115 39.1
BcaC01g05431 Brassica carinata HOM05D002733 ORTHO05D003856 2.6e-14 82.8 121 33.9
PGSC0003DMG400000371 Solanum tuberosum HOM05D002733 ORTHO05D003856 2.6e-14 82.8 128 34.4
Aa31LG8G17200 Aethionema arabicum HOM05D002733 ORTHO05D003856 3.4e-14 82.4 110 36.4
Aqoxy7G01497 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 3.4e-14 82.4 151 35.1
Aa31LG8G17150 Aethionema arabicum HOM05D002733 ORTHO05D003856 4.4e-14 82.0 104 38.5
PSO566G0305 Papaver somniferum HOM05D002733 ORTHO05D003856 5.8e-14 81.6 106 36.8
Peaxi162Scf00665g00139 Petunia axillaris HOM05D002733 ORTHO05D003856 5.8e-14 81.6 127 37.0
Phvul.005G028900 Phaseolus vulgaris HOM05D002733 ORTHO05D003856 7.5e-14 81.3 106 34.9
Aa31LG7G1600 Aethionema arabicum HOM05D002733 ORTHO05D003856 9.8e-14 80.9 145 34.5
C03p26370 Brassica napus HOM05D002733 ORTHO05D003856 9.8e-14 80.9 127 33.9
AL8G24310 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 1.3e-13 80.5 112 37.5
BraA03t11459Z Brassica rapa HOM05D002733 ORTHO05D003856 1.3e-13 80.5 129 32.6
C03p26740 Brassica napus HOM05D002733 ORTHO05D003856 2.2e-13 79.7 121 33.1
BolC3t15059H Brassica oleracea HOM05D002733 ORTHO05D003856 2.2e-13 79.7 121 33.1
A03p22270 Brassica napus HOM05D002733 ORTHO05D003856 2.9e-13 79.3 129 32.6
Aa31LG8G17190 Aethionema arabicum HOM05D002733 ORTHO05D003856 4.9e-13 78.6 125 34.4
A05p06330 Brassica napus HOM05D002733 ORTHO05D003856 4.9e-13 78.6 115 40.9
AT4G03170 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 6.4e-13 78.2 130 34.6
AT4G03160 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 8.3e-13 77.8 122 34.4
BcaC02g12127 Brassica carinata HOM05D002733 ORTHO05D003856 8.3e-13 77.8 115 40.9
Prupe.7G224100 Prunus persica HOM05D002733 ORTHO05D003856 1.9e-12 76.6 156 32.1
Aqoxy2G03580 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 2.4e-12 76.3 122 35.2
BraA05t19601Z Brassica rapa HOM05D002733 ORTHO05D003856 4.1e-12 75.5 115 40.9
THA.LOC104810048 Tarenaya hassleriana HOM05D002733 ORTHO05D003856 4.1e-12 75.5 132 31.8
Dinv41650 Davidia involucrata HOM05D002733 ORTHO05D003856 7.1e-12 74.7 121 38.8
C04p07280 Brassica napus HOM05D002733 ORTHO05D003856 9.2e-12 74.3 162 34.0
BolC4t22351H Brassica oleracea HOM05D002733 ORTHO05D003856 9.2e-12 74.3 162 34.0
TPR.G22027 Trifolium pratense HOM05D002733 ORTHO05D003856 2.1e-11 73.2 97 36.1
Sabra08G0161200 Salix brachista HOM05D002733 ORTHO05D003856 6.0e-11 71.6 102 39.2
Thhalv10017517m.g Eutrema salsugineum HOM05D002733 ORTHO05D003856 7.8e-11 71.2 144 32.6
CARHR135120 Cardamine hirsuta HOM05D002733 ORTHO05D003856 1.0e-10 70.9 110 30.0
Aa31LG7G1540 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.3e-10 70.5 154 31.8
Carub.0003s2754 Capsella rubella HOM05D002733 ORTHO05D003856 1.7e-10 70.1 117 35.9
Dinv07992 Davidia involucrata HOM05D002733 ORTHO05D003856 2.3e-10 69.7 98 41.8
Aa31LG7G1550 Aethionema arabicum HOM05D002733 ORTHO05D003856 3.0e-10 69.3 136 31.6
Thhalv10003384m.g Eutrema salsugineum HOM05D002733 ORTHO05D003856 3.9e-10 68.9 118 32.2
Aa31LG6G10180 Aethionema arabicum HOM05D002733 ORTHO05D003856 5.1e-10 68.6 144 31.9
Carub.0004s2232 Capsella rubella HOM05D002733 ORTHO05D003856 5.1e-10 68.6 105 36.2
MD02G1060300 Malus domestica HOM05D002733 ORTHO05D003856 6.6e-10 68.2 103 37.9
Aa31LG7G1590 Aethionema arabicum HOM05D002733 ORTHO05D003856 3.3e-09 65.9 111 31.5
COL.COLO4_00094 Corchorus olitorius HOM05D002733 ORTHO05D003856 5.6e-09 65.1 77 44.2
Aa31LG7G1580 Aethionema arabicum HOM05D002733 ORTHO05D003856 7.3e-09 64.7 76 42.1
FAN28G2808 Fragaria x ananassa HOM05D002733 ORTHO05D003856 2.1e-08 63.2 76 44.7
Prupe.1G534500 Prunus persica HOM05D000896 ORTHO05D000594 2.1e-08 63.2 149 32.2
Phvul.004G169500 Phaseolus vulgaris HOM05D022012 ORTHO05D003856 3.6e-08 62.4 116 32.8
Cfa002709 Carpinus fangiana HOM05D000896 ORTHO05D000594 4.7e-08 62.0 142 29.6
MBI18_g09775_MAGBIO Magnolia biondii HOM05D060425 ORTHO05D048574 6.2e-08 61.6 141 29.1
BolC3t19780H Brassica oleracea HOM05D010480 ORTHO05D003856 1.8e-07 60.1 122 31.1
ATR1159G057 Amborella trichopoda HOM05D020218 ORTHO05D013427 3.1e-07 59.3 109 33.0
Dinv26718 Davidia involucrata HOM05D002733 ORTHO05D003856 4.0e-07 58.9 81 39.5
FAN19G0693 Fragaria x ananassa HOM05D002733 ORTHO05D003856 4.0e-07 58.9 68 38.2
BraA04t17955Z Brassica rapa HOM05D000896 ORTHO05D000594 2.6e-06 56.2 114 33.3
BcaC01g05470 Brassica carinata HOM05D002733 ORTHO05D003856 3.4e-06 55.8 105 29.5


User provided reference genes

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