Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016169 Carpinus fangiana HOM05D005399 ORTHO05D006347 0.0e+00 1816.6 897 100.0
Haze_00285 Corylus avellana HOM05D005399 ORTHO05D006347 0.0e+00 1685.6 898 93.7
QL09p007265 Quercus lobata HOM05D005399 ORTHO05D006347 0.0e+00 1345.5 908 74.4
Thecc.03G207700 Theobroma cacao HOM05D005399 ORTHO05D006347 0.0e+00 1124.4 918 63.3
Ciclev10018828m.g Citrus clementina HOM05D005399 ORTHO05D006347 0.0e+00 1090.1 911 61.5
Potri.012G021900 Populus trichocarpa HOM05D005399 ORTHO05D006347 3.3e-308 1061.6 919 59.8
TWI39G1122 Tripterygium wilfordii HOM05D005399 ORTHO05D006347 6.5e-304 1047.3 916 59.7
Gorai.004G124900 Gossypium raimondii HOM05D005399 ORTHO05D006347 4.2e-303 1044.6 922 59.0
Sabra12G0011800 Salix brachista HOM05D005399 ORTHO05D006347 5.5e-303 1044.3 914 59.5
Gohir.D08G116000 Gossypium hirsutum HOM05D005399 ORTHO05D006347 1.5e-300 1036.2 927 58.7
TAR629G1213 Trochodendron aralioides HOM05D005399 ORTHO05D006347 2.6e-300 1035.4 1110 52.2
CANSAT21G1620 Cannabis sativa HOM05D005399 ORTHO05D006347 3.3e-300 1035.0 906 60.7
Sabra05G0139800 Salix brachista HOM05D005399 ORTHO05D006347 3.3e-300 1035.0 914 59.2
Atru.chr12.2405 Acer truncatum HOM05D005399 ORTHO05D006347 7.0e-298 1027.3 882 61.0
MD10G1005500 Malus domestica HOM05D005399 ORTHO05D006347 2.5e-295 1018.8 900 58.1
MD04G1021200 Malus domestica HOM05D005399 ORTHO05D006347 5.5e-295 1017.7 900 58.6
RcHm_v2.0_Chr4g0412561 Rosa chinensis HOM05D005399 ORTHO05D006347 2.0e-292 1009.2 902 58.2
Hma1.2p1_0094F.1_g047320 Hydrangea macrophylla HOM05D005399 ORTHO05D006347 4.5e-289 998.0 1107 49.9
FvH4_4g12930 Fragaria vesca HOM05D005399 ORTHO05D006347 1.3e-288 996.5 900 57.4
FAN07G0819 Fragaria x ananassa HOM05D005399 ORTHO05D006347 2.9e-288 995.3 900 57.4
FAN12G2064 Fragaria x ananassa HOM05D005399 ORTHO05D006347 5.0e-288 994.6 900 57.3
CiPaw.05G203600 Carya illinoinensis HOM05D005399 ORTHO05D006347 2.9e-280 968.8 666 74.5
GSVIVG01038634001 Vitis vinifera HOM05D005399 ORTHO05D006347 8.5e-280 967.2 906 56.6
COL.COLO4_14362 Corchorus olitorius HOM05D005399 ORTHO05D006347 1.2e-278 963.4 860 59.9
PGR102G0827 Punica granatum HOM05D005399 ORTHO05D006347 1.1e-271 940.3 919 54.4
Actinidia34263 Actinidia chinensis HOM05D005399 ORTHO05D006347 2.5e-271 939.1 1112 48.7
Lalb_Chr03g0034521 Lupinus albus HOM05D005399 ORTHO05D006347 4.2e-271 938.3 895 53.9
Prupe.1G170200 Prunus persica HOM05D005399 ORTHO05D006347 4.9e-267 924.9 829 58.6
Lj4g0025583 Lotus japonicus HOM05D005399 ORTHO05D006347 2.4e-266 922.5 897 54.3
Lj5g0008235 Lotus japonicus HOM05D005399 ORTHO05D006347 5.0e-264 914.8 898 53.3
ClCG08G014290 Citrullus lanatus HOM05D005399 ORTHO05D006347 2.5e-263 912.5 895 53.5
Medtr5g077160 Medicago truncatula HOM05D005399 ORTHO05D006347 2.5e-263 912.5 900 52.0
vmacro06433 Vaccinium macrocarpon HOM05D005399 ORTHO05D006347 9.5e-263 910.6 1115 47.3
Medtr1g059090 Medicago truncatula HOM05D005399 ORTHO05D006347 1.0e-261 907.1 904 53.2
TPR.G18894 Trifolium pratense HOM05D005399 ORTHO05D006347 2.3e-261 906.0 903 51.9
Sed0017875 Sechium edule HOM05D005399 ORTHO05D006347 1.5e-260 903.3 898 53.2
Glyma.10G094100 Glycine max HOM05D005399 ORTHO05D006347 4.4e-260 901.7 896 53.9
Nn3g18028 Nelumbo nucifera HOM05D005399 ORTHO05D006347 1.2e-257 893.6 1096 46.3
Phvul.004G128800 Phaseolus vulgaris HOM05D005399 ORTHO05D006347 6.0e-257 891.3 903 52.6
CsaV3_2G029520 Cucumis sativus L. HOM05D005399 ORTHO05D006347 2.5e-255 885.9 903 53.0
Ca_27344_v3 Cicer arietinum L. HOM05D005399 ORTHO05D006347 7.3e-255 884.4 890 52.6
DCAR_008979 Daucus carota HOM05D005399 ORTHO05D006347 2.3e-253 879.4 918 50.3
Cc11_g00230 Coffea canephora HOM05D005399 ORTHO05D006347 9.2e-250 867.5 901 50.3
CARHR158370 Cardamine hirsuta HOM05D005399 ORTHO05D006347 3.5e-249 865.5 916 50.0
Sopen06g030090 Solanum pennellii HOM05D005399 ORTHO05D006347 7.8e-249 864.4 919 50.6
Rhsim03G0214700 Rhododendron simsii HOM05D005399 ORTHO05D006347 1.7e-248 863.2 912 53.6
CAN.G65.216 Capsicum annuum HOM05D005399 ORTHO05D006347 3.0e-248 862.4 918 51.1
Aqoxy5G00909 Aquilegia oxysepala HOM05D005399 ORTHO05D006347 3.9e-248 862.1 1097 45.3
Sp5g12670 Schrenkiella parvula HOM05D005399 ORTHO05D006347 6.8e-245 851.3 915 50.5
AL5G29160 Arabidopsis lyrata HOM05D005399 ORTHO05D006347 1.7e-243 846.7 916 49.7
MSTRG.26983 Avicennia marina HOM05D005399 ORTHO05D006347 1.7e-243 846.7 910 49.8
Migut.F00156 Erythranthe guttata HOM05D005399 ORTHO05D006347 2.2e-243 846.3 912 50.4
Manes.01G042700 Manihot esculenta HOM05D005399 ORTHO05D006347 2.2e-243 846.3 915 52.6
Carub.0005s1567 Capsella rubella HOM05D005399 ORTHO05D006347 2.4e-242 842.8 911 49.8
arahy.Tifrunner.gnm1.ann1.MB6KVE Arachis hypogaea HOM05D005399 ORTHO05D006347 7.8e-241 837.8 916 48.8
Sc19g0000620 Simmondsia chinensis HOM05D005399 ORTHO05D006347 1.3e-240 837.0 929 48.3
arahy.Tifrunner.gnm1.ann1.CBX7CP Arachis hypogaea HOM05D005399 ORTHO05D006347 6.6e-240 834.7 916 48.7
BolC1t03020H Brassica oleracea HOM05D005399 ORTHO05D006347 5.6e-239 831.6 913 49.2
C01p30860 Brassica napus HOM05D005399 ORTHO05D006347 1.2e-238 830.5 913 49.1
BraA01t02386Z Brassica rapa HOM05D005399 ORTHO05D006347 1.2e-238 830.5 913 49.5
A01p24740 Brassica napus HOM05D005399 ORTHO05D006347 2.8e-238 829.3 913 49.6
THA.LOC104803340 Tarenaya hassleriana HOM05D005399 ORTHO05D006347 3.6e-238 828.9 926 49.1
SGA_v2.0_scaffold18G08460 Striga asiatica HOM05D005399 ORTHO05D006347 3.9e-232 808.9 906 48.7
Aa31LG4G17950 Aethionema arabicum HOM05D005399 ORTHO05D006347 1.6e-230 803.5 904 47.6
Psat2g044800 Pisum sativum HOM05D005399 ORTHO05D006347 8.4e-227 791.2 911 48.1
Thhalv10010115m.g Eutrema salsugineum HOM05D005399 ORTHO05D006347 3.5e-225 785.8 913 47.5
Oeu037969.1 Olea europaea HOM05D005399 ORTHO05D006347 7.8e-225 784.6 902 47.8
Gohir.A08G104400 Gossypium hirsutum HOM05D005399 ORTHO05D006347 9.6e-223 777.7 645 60.9
Glyma.14G156200 Glycine max HOM05D005399 ORTHO05D006347 1.5e-220 770.4 808 51.5
Lj3C896G2 Lonicera japonica HOM05D005399 ORTHO05D006347 4.9e-219 765.4 1058 43.4
HanXRQChr15g0470151 Helianthus annuus HOM05D005399 ORTHO05D006347 1.6e-217 760.4 903 47.5
Duzib205G1241 Durio zibethinus HOM05D005399 ORTHO05D006347 2.7e-217 759.6 913 48.5
SalBow6G2741 Salvia bowleyana HOM05D005399 ORTHO05D006347 1.3e-214 750.7 906 46.9
SalBow1G5593 Salvia bowleyana HOM05D005399 ORTHO05D006347 2.9e-211 739.6 907 45.9
arahy.Tifrunner.gnm1.ann1.61K3C5 Arachis hypogaea HOM05D005399 ORTHO05D006347 1.9e-210 736.9 854 47.1
EL10Ac3g05189 Beta vulgaris HOM05D005399 ORTHO05D006347 5.5e-210 735.3 1086 40.7
MELO3C011011.2 Cucumis melo HOM05D005399 ORTHO05D006347 1.8e-208 730.3 926 46.2
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 9.6e-207 724.5 803 48.2
PSO782G2701 Papaver somniferum HOM05D005399 ORTHO05D006347 2.1e-206 723.4 1066 42.1
HanXRQChr01g0023961 Helianthus annuus HOM05D005399 ORTHO05D006347 1.1e-202 711.1 903 46.1
SalBow1G2085 Salvia bowleyana HOM05D005399 ORTHO05D006347 1.1e-202 711.1 909 44.4
Nitab4.5_0000271g0170 Nicotiana tabacum HOM05D005399 ORTHO05D006347 5.5e-202 708.8 805 48.9
Lsat_1_v5_gn_7_13681 Lactuca sativa HOM05D005399 ORTHO05D006347 9.3e-202 708.0 859 47.1
VMungo1080G0063 Vigna mungo HOM05D005399 ORTHO05D006347 1.1e-199 701.0 1131 38.7
Nitab4.5_0002184g0080 Nicotiana tabacum HOM05D005399 ORTHO05D006347 7.4e-191 671.8 781 49.0
ECA236G2916 Erigeron canadensis HOM05D005399 ORTHO05D006347 3.6e-185 652.9 823 45.1
SalBow1G6622 Salvia bowleyana HOM05D005399 ORTHO05D006347 1.4e-184 651.0 859 44.6
Dinv29218 Davidia involucrata HOM05D005399 ORTHO05D006347 1.4e-181 641.0 491 64.2
AUR62035614 Chenopodium quinoa HOM05D005399 ORTHO05D006347 1.5e-178 630.9 1021 39.0
Cpa.g.sc13.113 Carica papaya HOM05D005399 ORTHO05D006347 6.1e-177 625.5 698 50.9
Os01g0702400 Oryza sativa ssp. japonica HOM05D005399 ORTHO05D006347 1.5e-175 620.9 975 38.3
ATR1089G058 Amborella trichopoda HOM05D005399 ORTHO05D006347 3.7e-174 616.3 976 38.9
AUR62006012 Chenopodium quinoa HOM05D005399 ORTHO05D006347 1.0e-163 581.6 699 47.1
Eucgr.H04750 Eucalyptus grandis HOM05D005399 ORTHO05D006347 5.0e-163 579.3 524 57.3
AT3G49400 Arabidopsis thaliana HOM05D005399 ORTHO05D006347 8.0e-153 545.4 554 52.3
arahy.Tifrunner.gnm1.ann1.GD33A2 Arachis hypogaea HOM05D005399 ORTHO05D006347 4.9e-142 509.6 612 45.1
unitig_749.g13730 Utricularia gibba HOM05D005399 ORTHO05D006347 5.4e-141 506.1 906 36.1
Ah.09g232770 Amaranthus hybridus HOM05D005399 ORTHO05D006347 3.1e-136 490.3 621 47.0
CDE04G3617 Ceratophyllum demersum HOM05D005399 ORTHO05D006347 2.9e-134 483.8 950 34.1
PGSC0003DMG400005917 Solanum tuberosum HOM05D005399 ORTHO05D006347 6.6e-131 472.6 517 50.5
Pp3c18_13210 Physcomitrium patens HOM05D005399 ORTHO05D006347 1.1e-130 471.9 955 35.2
arahy.Tifrunner.gnm1.ann1.JN7TNN Arachis hypogaea HOM05D005399 ORTHO05D006347 6.0e-124 449.5 806 35.9
VMungo0464G0254 Vigna mungo HOM05D005399 ORTHO05D006347 1.7e-123 448.0 566 46.3
Hund09706 Selenicereus undatus HOM05D005399 ORTHO05D006347 7.3e-122 442.6 944 33.8
Zm00001eb062490 Zea mays HOM05D005399 ORTHO05D006347 3.8e-118 430.3 590 40.8
SMO170G0037 Selaginella moellendorffii HOM05D005399 ORTHO05D006347 2.1e-116 424.5 938 32.5
Mapoly0079s0055 Marchantia polymorpha HOM05D005399 ORTHO05D006347 2.6e-111 407.5 1196 28.3
Eucgr.H04749 Eucalyptus grandis HOM05D005399 ORTHO05D006347 8.7e-107 392.5 382 53.9
Zm00001eb211870 Zea mays HOM05D005399 ORTHO05D006347 6.7e-91 339.7 483 42.0
PSO063G2915 Papaver somniferum HOM05D005399 ORTHO05D006347 1.8e-88 331.6 679 36.7
Peaxi162Scf00526g00518 Petunia axillaris HOM05D005399 ORTHO05D006347 1.2e-87 328.9 367 46.0
SHI24245 Sapria himalayana HOM05D005399 ORTHO05D006347 1.5e-79 302.0 372 46.5
AagrBONN_evm.TU.Sc2ySwM_117.1095 Anthoceros agrestis HOM05D005399 ORTHO05D006347 1.0e-78 299.3 920 29.0
Dinv29217 Davidia involucrata HOM05D005399 ORTHO05D006347 2.3e-75 288.1 272 57.0
arahy.Tifrunner.gnm1.ann1.QKC624 Arachis hypogaea HOM05D005399 ORTHO05D006347 7.7e-71 273.1 653 30.0
Gohir.A08G105050 Gossypium hirsutum HOM05D005399 ORTHO05D006347 3.8e-70 270.8 202 67.8
CSS0044981 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 9.4e-69 266.2 256 58.2
Dinv07613 Davidia involucrata HOM05D005399 ORTHO05D006347 6.1e-68 263.5 159 76.7
CSS0012529 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 8.8e-67 259.6 212 62.7
BcaC09g49949 Brassica carinata HOM05D005399 ORTHO05D006347 5.7e-66 256.9 301 47.5
SHI24147 Sapria himalayana HOM05D005399 ORTHO05D006347 2.8e-65 254.6 365 41.4
Peaxi162Scf00526g00516 Petunia axillaris HOM05D005399 ORTHO05D006347 5.7e-58 230.3 196 60.2
Solyc06g073690.2 Solanum lycopersicum HOM05D005399 ORTHO05D006347 7.0e-56 223.4 196 58.2
BcaB05g23117 Brassica carinata HOM05D005399 ORTHO05D006347 8.5e-54 216.5 186 58.1
SEGI_05702 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 8.0e-52 209.9 272 42.3
HPP92_021257 Vanilla planifolia HOM05D005399 ORTHO05D006347 7.0e-40 170.2 336 33.6
CBR_g20108 Chara braunii HOM05D001969 ORTHO05D003463 7.3e-37 160.2 767 23.7
BcaC09g49950 Brassica carinata HOM05D005399 ORTHO05D006347 2.3e-35 155.2 109 67.0
Psat6g243120 Pisum sativum HOM05D005399 ORTHO05D006347 2.5e-29 135.2 210 36.2
MD10G1005800 Malus domestica HOM05D005399 ORTHO05D006347 4.0e-27 127.9 87 64.4
Medtr1g085950 Medicago truncatula HOM05D005399 ORTHO05D006347 1.3e-22 112.8 85 67.1
SHI24234 Sapria himalayana HOM05D005399 ORTHO05D006347 1.3e-22 112.8 122 53.3
SEGI_00776 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 5.0e-22 110.9 121 49.6
MBI17_g18936_MAGBIO Magnolia biondii HOM05D005399 ORTHO05D006347 1.1e-21 109.8 141 44.7
MCO09G305 Micromonas commoda HOM05D005399 ORTHO05D006347 3.3e-13 81.6 157 35.7
EL10As6g23691 Beta vulgaris HOM05D005399 ORTHO05D006347 4.4e-10 71.2 107 38.3
SHI24230 Sapria himalayana HOM05D005399 ORTHO05D006347 2.1e-07 62.4 42 69.0
MBI17_g10900_MAGBIO Magnolia biondii HOM05D005399 ORTHO05D006347 6.0e-07 60.8 63 47.6
SHI24232 Sapria himalayana HOM05D005399 ORTHO05D006347 3.0e-06 58.5 29 79.3


User provided reference genes

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