Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016162 Carpinus fangiana HOM05D003457 ORTHO05D009249 6.0e-170 600.9 337 100.0
CiPaw.06G041400 Carya illinoinensis HOM05D003457 ORTHO05D009249 8.3e-103 377.9 354 63.0
CiPaw.02G048700 Carya illinoinensis HOM05D003457 ORTHO05D009249 1.8e-60 237.3 205 66.8
QL09p007211 Quercus lobata HOM05D003457 ORTHO05D009249 3.9e-52 209.5 363 46.0
FvH4_7g32890 Fragaria vesca HOM05D003457 ORTHO05D009249 1.5e-51 207.6 356 44.1
FAN10G0211 Fragaria x ananassa HOM05D003457 ORTHO05D009746 2.8e-50 203.4 349 43.8
Gohir.D04G000050 Gossypium hirsutum HOM05D003457 ORTHO05D009249 4.8e-50 202.6 373 41.0
FAN03G1743 Fragaria x ananassa HOM05D003457 ORTHO05D009746 9.0e-49 198.4 349 44.1
MD07G1298800 Malus domestica HOM05D003457 ORTHO05D009249 1.0e-47 194.9 381 41.7
Prupe.2G318600 Prunus persica HOM05D003457 ORTHO05D009249 1.7e-47 194.1 423 39.5
Gorai.012G000700 Gossypium raimondii HOM05D003457 ORTHO05D009249 2.2e-47 193.7 370 40.5
Thecc.03G208400 Theobroma cacao HOM05D003457 ORTHO05D009249 8.4e-47 191.8 373 41.3
MD01G1228100 Malus domestica HOM05D003457 ORTHO05D009249 7.2e-46 188.7 385 40.3
FAN01G1561 Fragaria x ananassa HOM05D003457 ORTHO05D009746 9.3e-46 188.3 346 42.5
RcHm_v2.0_Chr1g0382841 Rosa chinensis HOM05D003457 ORTHO05D009249 1.0e-44 184.9 360 40.8
Dinv29212 Davidia involucrata HOM05D003457 ORTHO05D009249 5.1e-44 182.6 364 39.8
Duzib205G0475 Durio zibethinus HOM05D003457 ORTHO05D009249 5.1e-44 182.6 369 39.8
FAN10G3191 Fragaria x ananassa HOM05D003457 ORTHO05D009746 1.9e-43 180.6 354 39.3
Dinv35380 Davidia involucrata HOM05D003457 ORTHO05D009746 2.5e-43 180.3 382 39.0
Duzib084G1096 Durio zibethinus HOM05D003457 ORTHO05D009249 1.8e-41 174.1 390 36.4
PGR142G1344 Punica granatum HOM05D003457 ORTHO05D009249 1.8e-41 174.1 335 43.9
Ciclev10020653m.g Citrus clementina HOM05D003457 ORTHO05D009249 2.4e-41 173.7 333 42.0
Gohir.D04G000080 Gossypium hirsutum HOM05D003457 ORTHO05D009249 5.9e-40 169.1 355 39.4
ClCG00G005020 Citrullus lanatus HOM05D003457 ORTHO05D009249 3.8e-39 166.4 364 37.1
ClCG01G004630 Citrullus lanatus HOM05D003457 ORTHO05D009249 3.8e-39 166.4 364 37.1
Duzib068G0780 Durio zibethinus HOM05D003457 ORTHO05D009249 1.1e-38 164.9 341 38.7
ClCG01G004590 Citrullus lanatus HOM05D003457 ORTHO05D009249 1.9e-38 164.1 339 38.3
Manes.01G043100 Manihot esculenta HOM05D003457 ORTHO05D009249 1.2e-37 161.4 372 38.4
Eucgr.K00429 Eucalyptus grandis HOM05D003457 ORTHO05D009249 1.8e-36 157.5 352 38.9
TWI23G0841 Tripterygium wilfordii HOM05D003457 ORTHO05D009249 1.8e-36 157.5 354 39.8
CsaV3_5G004840 Cucumis sativus L. HOM05D003457 ORTHO05D009249 3.3e-35 153.3 345 38.3
COL.COLO4_14368 Corchorus olitorius HOM05D003457 ORTHO05D009249 4.3e-35 152.9 343 34.7
Actinidia08697 Actinidia chinensis HOM05D003457 ORTHO05D009249 1.3e-34 151.4 348 35.6
MELO3C033815.2 Cucumis melo HOM05D003457 ORTHO05D009249 1.7e-34 151.0 351 38.2
Potri.015G005100 Populus trichocarpa HOM05D003457 ORTHO05D009249 9.1e-33 145.2 362 38.4
Actinidia34268 Actinidia chinensis HOM05D003457 ORTHO05D009249 1.0e-31 141.7 350 34.3
CSS0029860 Camellia sinensis var. sinensis HOM05D003457 ORTHO05D009249 8.5e-31 138.7 355 36.3
THA.LOC104798986 Tarenaya hassleriana HOM05D003457 ORTHO05D009249 8.5e-31 138.7 329 37.1
CSS0022238 Camellia sinensis var. sinensis HOM05D003457 ORTHO05D009249 1.4e-30 137.9 355 36.3
Nitab4.5_0000319g0070 Nicotiana tabacum HOM05D003457 ORTHO05D009249 2.5e-30 137.1 350 34.0
Cpa.g.sc3.155 Carica papaya HOM05D003457 ORTHO05D009249 4.2e-30 136.3 302 43.0
Nn1g00443 Nelumbo nucifera HOM05D003457 ORTHO05D009249 3.9e-28 129.8 379 33.2
TAR629G1045 Trochodendron aralioides HOM05D003457 ORTHO05D009249 2.0e-27 127.5 333 35.7
Aa31LG11G3740 Aethionema arabicum HOM05D003457 ORTHO05D009249 9.7e-27 125.2 344 35.5
Sopen03g022030 Solanum pennellii HOM05D003457 ORTHO05D009249 1.3e-26 124.8 360 33.9
Atru.chr12.2426 Acer truncatum HOM05D003457 ORTHO05D009249 8.2e-26 122.1 190 45.3
Solyc03g081310.3 Solanum lycopersicum HOM05D003457 ORTHO05D009249 8.2e-26 122.1 374 32.9
PGSC0003DMG400000588 Solanum tuberosum HOM05D003457 ORTHO05D009249 8.2e-26 122.1 379 31.7
Sp2g22840 Schrenkiella parvula HOM05D003457 ORTHO05D009249 5.3e-25 119.4 344 32.8
SGA_v2.0_scaffold141G35555 Striga asiatica HOM05D003457 ORTHO05D009249 4.5e-24 116.3 324 34.0
Rhsim03G0215300 Rhododendron simsii HOM05D003457 ORTHO05D009249 1.7e-23 114.4 292 34.2
Thhalv10005511m.g Eutrema salsugineum HOM05D003457 ORTHO05D009249 2.9e-23 113.6 273 36.3
AL6G36090 Arabidopsis lyrata HOM05D003457 ORTHO05D009249 5.0e-23 112.8 356 33.1
CARHR188920 Cardamine hirsuta HOM05D003457 ORTHO05D009249 5.0e-23 112.8 293 36.2
Nitab4.5_0005040g0050 Nicotiana tabacum HOM05D003457 ORTHO05D009249 6.5e-23 112.5 310 33.2
Sabra15G0003600 Salix brachista HOM05D003457 ORTHO05D009249 1.9e-22 110.9 303 38.6
Cc02_g00840 Coffea canephora HOM05D003457 ORTHO05D009249 3.2e-22 110.2 372 29.6
Carub.0006s2232 Capsella rubella HOM05D003457 ORTHO05D009249 4.2e-22 109.8 336 34.2
Peaxi162Scf00300g00833 Petunia axillaris HOM05D003457 ORTHO05D009249 4.2e-22 109.8 333 33.9
AT5G24500 Arabidopsis thaliana HOM05D003457 ORTHO05D009249 1.6e-21 107.8 251 36.3
Aqoxy5G04336 Aquilegia oxysepala HOM05D003457 ORTHO05D009249 3.6e-21 106.7 324 34.3
Migut.F00990 Erythranthe guttata HOM05D003457 ORTHO05D009249 8.0e-21 105.5 328 31.1
Potri.012G021300 Populus trichocarpa HOM05D003457 ORTHO05D009249 1.4e-20 104.8 307 35.5
MSTRG.31 Avicennia marina HOM05D003457 ORTHO05D009249 2.3e-20 104.0 338 33.4
EL10Ac3g05182 Beta vulgaris HOM05D003457 ORTHO05D009249 3.0e-20 103.6 348 33.0
BcaB07g29912 Brassica carinata HOM05D003457 ORTHO05D009249 3.0e-20 103.6 273 33.7
Oeu037975.2 Olea europaea HOM05D003457 ORTHO05D009249 5.2e-20 102.8 275 32.7
Sabra12G0012300 Salix brachista HOM05D003457 ORTHO05D009249 5.2e-20 102.8 287 40.4
TAR636G2436 Trochodendron aralioides HOM05D003457 ORTHO05D009249 5.7e-19 99.4 262 34.0
CAN.G303.15 Capsicum annuum HOM05D003457 ORTHO05D009249 7.5e-19 99.0 344 30.8
Medtr3g092670 Medicago truncatula HOM05D003457 ORTHO05D009249 2.8e-18 97.1 241 35.3
Glyma.04G228600 Glycine max HOM05D003457 ORTHO05D009249 4.8e-18 96.3 237 38.0
BcaC03g17967 Brassica carinata HOM05D003457 ORTHO05D009249 1.1e-17 95.1 288 33.7
SalBow2G2220 Salvia bowleyana HOM05D003457 ORTHO05D009249 1.1e-17 95.1 340 33.2
BraA02t08999Z Brassica rapa HOM05D003457 ORTHO05D009249 5.3e-17 92.8 288 33.7
MBI12_g09299_MAGBIO Magnolia biondii HOM05D003457 ORTHO05D009249 5.3e-17 92.8 282 32.6
Sabra05G0139600 Salix brachista HOM05D003457 ORTHO05D009249 5.3e-17 92.8 274 39.1
Lsat_1_v5_gn_8_4361 Lactuca sativa HOM05D003457 ORTHO05D009249 7.0e-17 92.4 321 31.2
A02p40300 Brassica napus HOM05D003457 ORTHO05D009249 9.1e-17 92.0 288 34.0
Glyma.06G136400 Glycine max HOM05D003457 ORTHO05D009249 1.2e-16 91.7 237 41.8
PSO782G2427 Papaver somniferum HOM05D003457 ORTHO05D009249 1.2e-16 91.7 262 32.4
BolC2t12082H Brassica oleracea HOM05D003457 ORTHO05D009249 1.6e-16 91.3 288 33.3
VMungo1309G3135 Vigna mungo HOM05D003457 ORTHO05D009249 1.6e-16 91.3 236 38.1
C02p60250 Brassica napus HOM05D003457 ORTHO05D009249 2.0e-16 90.9 288 33.3
Lsat_1_v5_gn_9_3980 Lactuca sativa HOM05D003457 ORTHO05D009249 3.5e-16 90.1 240 35.8
Lsat_1_v5_gn_5_51360 Lactuca sativa HOM05D003457 ORTHO05D009249 1.0e-15 88.6 240 35.4
Lj1g0002342 Lotus japonicus HOM05D003457 ORTHO05D009249 1.0e-15 88.6 235 34.0
Phvul.009G045300 Phaseolus vulgaris HOM05D003457 ORTHO05D009249 1.3e-15 88.2 233 35.6
Psat5g072040 Pisum sativum HOM05D003457 ORTHO05D009249 1.7e-15 87.8 241 34.4
Sc13g0010260 Simmondsia chinensis HOM05D003457 ORTHO05D009249 1.7e-15 87.8 339 31.9
HanXRQChr08g0225921 Helianthus annuus HOM05D003457 ORTHO05D009249 3.8e-15 86.7 307 31.6
TPR.G33664 Trifolium pratense HOM05D003457 ORTHO05D009249 6.5e-15 85.9 286 31.8
HPP92_015415 Vanilla planifolia HOM05D003457 ORTHO05D009249 8.5e-15 85.5 334 32.0
Ca_16777_v3 Cicer arietinum L. HOM05D003457 ORTHO05D009249 1.9e-14 84.3 247 32.8
Lsat_1_v5_gn_1_120581 Lactuca sativa HOM05D003457 ORTHO05D009249 1.9e-14 84.3 273 33.3
Ah.07g204690 Amaranthus hybridus HOM05D003457 ORTHO05D009249 4.2e-14 83.2 226 33.6
AUR62035619 Chenopodium quinoa HOM05D003457 ORTHO05D009249 4.2e-14 83.2 300 31.3
Lsat_1_v5_gn_7_20360 Lactuca sativa HOM05D003457 ORTHO05D009249 4.2e-14 83.2 275 34.2
CDE02G1140 Ceratophyllum demersum HOM05D003457 ORTHO05D009249 3.0e-12 77.0 324 30.2
DCAR_020371 Daucus carota HOM05D003457 ORTHO05D009249 6.8e-12 75.9 278 30.6
CDE01G0392 Ceratophyllum demersum HOM05D003457 ORTHO05D009249 2.6e-11 73.9 321 28.3
AUR62006007 Chenopodium quinoa HOM05D003457 ORTHO05D009746 5.7e-11 72.8 278 32.4
GSVIVG01038640001 Vitis vinifera HOM05D003457 ORTHO05D009249 2.8e-10 70.5 78 55.1
ATR1155G002 Amborella trichopoda HOM05D003457 ORTHO05D009249 3.1e-09 67.0 240 26.7
unitig_90.g27506 Utricularia gibba HOM05D003457 ORTHO05D009249 7.0e-09 65.9 167 39.5
Lalb_Chr08g0239631 Lupinus albus HOM05D003457 ORTHO05D009249 7.2e-06 55.8 232 27.6


User provided reference genes

Program Settings