Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016147 Carpinus fangiana HOM05D006657 ORTHO05D005964 0.0e+00 2342.8 1183 100.0
Haze_00307 Corylus avellana HOM05D006657 ORTHO05D005964 0.0e+00 2158.6 1191 92.6
QL09p006779 Quercus lobata HOM05D006657 ORTHO05D005964 0.0e+00 1429.8 1218 64.8
CiPaw.05G206100 Carya illinoinensis HOM05D006657 ORTHO05D005964 0.0e+00 1333.9 1209 62.0
Prupe.2G320100 Prunus persica HOM05D006657 ORTHO05D005964 2.2e-211 740.3 1294 41.0
GSVIVG01038660001 Vitis vinifera HOM05D006657 ORTHO05D005964 1.2e-193 681.4 1253 40.1
Dinv17292 Davidia involucrata HOM05D006657 ORTHO05D005964 5.2e-192 676.0 1258 38.6
FvH4_7g33030 Fragaria vesca HOM05D006657 ORTHO05D005964 9.2e-189 665.2 1256 40.4
FAN03G1526 Fragaria x ananassa HOM05D006657 ORTHO05D005964 9.5e-186 655.2 1252 39.5
FAN10G2847 Fragaria x ananassa HOM05D006657 ORTHO05D005964 5.2e-184 649.4 1256 40.0
Manes.01G044100 Manihot esculenta HOM05D006657 ORTHO05D005964 8.3e-182 642.1 1210 39.3
Potri.015G003700 Populus trichocarpa HOM05D006657 ORTHO05D005964 8.6e-179 632.1 1301 38.0
MD01G1229500 Malus domestica HOM05D006657 ORTHO05D005964 4.7e-177 626.3 1250 37.5
FAN10G1617 Fragaria x ananassa HOM05D006657 ORTHO05D005964 2.0e-175 620.9 1256 38.8
MD07G1301500 Malus domestica HOM05D006657 ORTHO05D005964 1.1e-173 615.1 1254 36.9
Sabra15G0002400 Salix brachista HOM05D006657 ORTHO05D005964 4.6e-172 609.8 1297 37.7
Actinidia34275 Actinidia chinensis HOM05D006657 ORTHO05D005964 4.4e-167 593.2 1349 35.9
RcHm_v2.0_Chr1g0383041 Rosa chinensis HOM05D006657 ORTHO05D005964 3.7e-166 590.1 1160 38.4
Sabra12G0004100 Salix brachista HOM05D006657 ORTHO05D005964 8.6e-163 578.9 1294 36.9
Potri.012G007000 Populus trichocarpa HOM05D006657 ORTHO05D005964 6.4e-158 562.8 1293 36.4
Sabra12G0008600 Salix brachista HOM05D006657 ORTHO05D005964 6.4e-158 562.8 1291 36.5
CSS0010102 Camellia sinensis var. sinensis HOM05D006657 ORTHO05D005964 2.3e-155 554.3 1321 36.0
Ciclev10018632m.g Citrus clementina HOM05D006657 ORTHO05D005964 5.2e-152 543.1 1222 36.7
Dinv29204 Davidia involucrata HOM05D006657 ORTHO05D005964 1.5e-151 541.6 1026 39.8
Duzib205G0597 Durio zibethinus HOM05D006657 ORTHO05D005964 1.7e-150 538.1 1170 36.2
Duzib084G0166 Durio zibethinus HOM05D006657 ORTHO05D005964 4.9e-150 536.6 1212 36.2
Thecc.03G210000 Theobroma cacao HOM05D006657 ORTHO05D005964 1.2e-148 531.9 1218 36.3
CiPaw.06G040100 Carya illinoinensis HOM05D006657 ORTHO05D005964 2.3e-147 527.7 513 59.3
TWI23G1261 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 3.4e-143 513.8 1217 36.3
TWI14G0251 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 1.2e-140 505.4 1223 35.7
CANSAT21G0900 Cannabis sativa HOM05D006657 ORTHO05D005964 8.7e-139 499.2 1222 35.7
TAR375G0071 Trochodendron aralioides HOM05D006657 ORTHO05D005964 5.6e-138 496.5 1256 36.2
Duzib068G0081 Durio zibethinus HOM05D006657 ORTHO05D005964 1.4e-133 481.9 1163 34.6
COL.COLO4_14382 Corchorus olitorius HOM05D006657 ORTHO05D005964 4.2e-133 480.3 1210 34.9
Atru.chr12.2479 Acer truncatum HOM05D006657 ORTHO05D005964 2.5e-130 471.1 899 38.9
TAR374G0213 Trochodendron aralioides HOM05D006657 ORTHO05D005964 9.0e-128 462.6 938 40.3
Gorai.004G125800 Gossypium raimondii HOM05D006657 ORTHO05D005964 1.8e-120 438.3 1210 33.5
Gohir.D08G117100 Gossypium hirsutum HOM05D006657 ORTHO05D005964 1.1e-114 419.1 1210 33.0
vmacro10166 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 4.2e-109 400.6 1260 31.0
Rhsim09G0210400 Rhododendron simsii HOM05D006657 ORTHO05D005964 4.4e-106 390.6 1212 31.9
Rhsim03G0216600 Rhododendron simsii HOM05D006657 ORTHO05D005964 4.5e-103 380.6 1208 30.5
vmacro06453 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 1.6e-100 372.1 1226 30.9
CsaV3_4G008600 Cucumis sativus L. HOM05D006657 ORTHO05D005964 2.0e-98 365.2 1245 29.6
Cpa.g.sc3.164 Carica papaya HOM05D006657 ORTHO05D005964 1.8e-91 342.0 1248 29.5
Glyma.06G138000 Glycine max HOM05D006657 ORTHO05D005964 9.7e-90 336.3 1217 29.7
Actinidia08706 Actinidia chinensis HOM05D006657 ORTHO05D005964 2.8e-89 334.7 1041 30.5
Glyma.04G227100 Glycine max HOM05D006657 ORTHO05D005964 8.2e-89 333.2 1215 30.5
arahy.Tifrunner.gnm1.ann1.UMZ78C Arachis hypogaea HOM05D006657 ORTHO05D005964 4.1e-88 330.9 1066 31.8
Lalb_Chr23g0272001 Lupinus albus HOM05D006657 ORTHO05D005964 5.3e-88 330.5 1248 30.1
arahy.Tifrunner.gnm1.ann1.UB23H3 Arachis hypogaea HOM05D006657 ORTHO05D005964 3.8e-86 324.3 1224 29.9
Ca_16789_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 1.9e-85 322.0 1265 29.2
Ca_16805_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 1.9e-85 322.0 1265 29.2
Cc07_g20200 Coffea canephora HOM05D006657 ORTHO05D005964 1.8e-80 305.4 1250 30.2
TAR629G2606 Trochodendron aralioides HOM05D006657 ORTHO05D005964 2.7e-79 301.6 861 34.6
Medtr3g093000 Medicago truncatula HOM05D006657 ORTHO05D005964 7.7e-79 300.1 1043 29.8
Lalb_Chr11g0067471 Lupinus albus HOM05D006657 ORTHO05D005964 4.2e-77 294.3 1247 28.5
Sed0019147 Sechium edule HOM05D006657 ORTHO05D005964 1.2e-74 286.2 1121 29.7
Oeu055400.1 Olea europaea HOM05D006657 ORTHO05D005964 9.8e-74 283.1 1252 28.4
Nn1g05264 Nelumbo nucifera HOM05D006657 ORTHO05D005964 2.2e-73 282.0 1231 27.9
DCAR_008990 Daucus carota HOM05D006657 ORTHO05D005964 3.7e-73 281.2 1020 30.1
FAN01G2018 Fragaria x ananassa HOM05D006657 ORTHO05D005964 5.9e-71 273.9 536 39.4
Lj1g0002697 Lotus japonicus HOM05D006657 ORTHO05D005964 7.3e-69 266.9 1238 27.8
TPR.G33400 Trifolium pratense HOM05D006657 ORTHO05D005964 8.0e-68 263.5 1249 28.0
Gohir.A08G105800 Gossypium hirsutum HOM05D006657 ORTHO05D005964 1.7e-65 255.8 865 31.4
Phvul.009G038600 Phaseolus vulgaris HOM05D006657 ORTHO05D005964 7.8e-63 246.9 1268 27.3
Psat5g071280 Pisum sativum HOM05D006657 ORTHO05D005964 8.6e-62 243.4 936 30.8
VMungo1309G0886 Vigna mungo HOM05D006657 ORTHO05D005964 4.3e-61 241.1 1296 26.2
PGR042G1854 Punica granatum HOM05D006657 ORTHO05D005964 2.8e-60 238.4 1167 27.2
Migut.F00140 Erythranthe guttata HOM05D006657 ORTHO05D005964 1.5e-53 216.1 975 28.1
PGSC0003DMG400000558 Solanum tuberosum HOM05D006657 ORTHO05D005964 4.7e-52 211.1 996 28.0
SalBow4G2342 Salvia bowleyana HOM05D006657 ORTHO05D005964 2.6e-50 205.3 1241 25.1
Lj1A1029T62 Lonicera japonica HOM05D006657 ORTHO05D005964 3.4e-50 204.9 481 34.7
CAN.G303.40 Capsicum annuum HOM05D006657 ORTHO05D005964 5.8e-50 204.1 997 27.2
Sc13g0010540 Simmondsia chinensis HOM05D006657 ORTHO05D005964 7.5e-50 203.8 1240 26.0
Sopen03g021870 Solanum pennellii HOM05D006657 ORTHO05D005964 3.7e-49 201.4 1013 27.0
Solyc03g080140.3 Solanum lycopersicum HOM05D006657 ORTHO05D005964 1.1e-48 199.9 989 27.2
Peaxi162Scf00912g00114 Petunia axillaris HOM05D006657 ORTHO05D005964 2.4e-48 198.7 1010 27.8
SGA_v2.0_scaffold44G16853 Striga asiatica HOM05D006657 ORTHO05D005964 4.1e-48 198.0 1227 24.8
MSTRG.26967 Avicennia marina HOM05D006657 ORTHO05D005964 1.6e-47 196.1 1309 25.6
DCAR_020382 Daucus carota HOM05D006657 ORTHO05D005964 2.1e-47 195.7 1037 28.5
SalBow4G2934 Salvia bowleyana HOM05D006657 ORTHO05D005964 4.6e-47 194.5 1237 24.8
Nitab4.5_0000021g0080 Nicotiana tabacum HOM05D006657 ORTHO05D005964 3.3e-45 188.3 1014 29.0
CiPaw.06G039800 Carya illinoinensis HOM05D006657 ORTHO05D005964 8.1e-44 183.7 175 58.3
PSO782G1897 Papaver somniferum HOM05D006657 ORTHO05D005964 1.5e-42 179.5 1335 25.9
Nitab4.5_0006821g0010 Nicotiana tabacum HOM05D006657 ORTHO05D005964 2.0e-42 179.1 1026 28.6
PSO170G0737 Papaver somniferum HOM05D006657 ORTHO05D005964 2.9e-41 175.3 1330 25.7
TAR629G3494 Trochodendron aralioides HOM05D006657 ORTHO05D005964 1.9e-40 172.6 426 35.7
SGA_v2.0_scaffold18G08476 Striga asiatica HOM05D006657 ORTHO05D005964 3.0e-38 165.2 1076 26.4
Eucgr.K00044 Eucalyptus grandis HOM05D006657 ORTHO05D005964 4.3e-37 161.4 1063 24.4
EL10Ac3g05155 Beta vulgaris HOM05D006657 ORTHO05D005964 4.0e-35 154.8 1162 24.8
Aqoxy5G04358 Aquilegia oxysepala HOM05D006657 ORTHO05D005964 4.4e-34 151.4 1257 25.1
Oeu029332.2 Olea europaea HOM05D006657 ORTHO05D005964 1.1e-32 146.7 503 30.2
QL02p027097 Quercus lobata HOM05D013249 ORTHO05D011012 6.0e-31 141.0 919 25.0
Ah.13g070870 Amaranthus hybridus HOM05D006657 ORTHO05D005964 1.7e-30 139.4 1183 25.7
AUR62005972 Chenopodium quinoa HOM05D006657 ORTHO05D005964 3.0e-30 138.7 1340 24.4
AUR62028098 Chenopodium quinoa HOM05D006657 ORTHO05D005964 5.1e-30 137.9 1346 24.1
MBI12_g20086_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 1.5e-29 136.3 1371 24.9
Eucgr.A00967 Eucalyptus grandis HOM05D006657 ORTHO05D005964 4.8e-28 131.3 640 26.9
Lsat_1_v5_gn_2_134840 Lactuca sativa HOM05D006657 ORTHO05D005964 1.1e-27 130.2 924 24.6
Hund23980 Selenicereus undatus HOM05D006657 ORTHO05D005964 9.0e-27 127.1 1177 24.6
Potri.001G452300 Populus trichocarpa HOM05D011672 ORTHO05D011012 1.3e-25 123.2 493 28.4
Cc00_g14340 Coffea canephora HOM05D006657 ORTHO05D005964 4.9e-25 121.3 387 32.0
Sabra16G0305400 Salix brachista HOM05D011672 ORTHO05D011012 9.3e-24 117.1 508 27.0
Ah.07g204540 Amaranthus hybridus HOM05D006657 ORTHO05D005964 2.7e-23 115.5 1165 23.7
QL09p006814 Quercus lobata HOM05D006657 ORTHO05D005964 6.0e-23 114.4 88 63.6
MBI04_g41177_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 1.1e-21 110.2 746 24.7
Cpa.g.sc9.388 Carica papaya HOM05D006657 ORTHO05D005964 9.6e-21 107.1 274 35.8
Atru.chr12.2480 Acer truncatum HOM05D006657 ORTHO05D005964 6.9e-19 100.9 265 34.7
HanXRQChr08g0226001 Helianthus annuus HOM05D006657 ORTHO05D005964 9.0e-19 100.5 518 26.3
MBI04_g37612_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 1.2e-18 100.1 1064 23.0
THA.LOC104799674 Tarenaya hassleriana HOM05D009821 ORTHO05D005964 1.3e-17 96.7 818 23.3
ATR0579G071 Amborella trichopoda HOM05D006657 ORTHO05D005964 8.4e-17 94.0 1068 23.9
MELO3C024862.2 Cucumis melo HOM05D006657 ORTHO05D005964 1.4e-16 93.2 275 33.1
QL09p006824 Quercus lobata HOM05D000005 ORTHO05D000012 3.5e-15 88.6 67 67.2
Haze_09217 Corylus avellana HOM05D013249 ORTHO05D011012 3.0e-14 85.5 951 24.5
TWI81G0792 Tripterygium wilfordii HOM05D011672 ORTHO05D011012 6.7e-14 84.3 444 26.6
Sp5g12600 Schrenkiella parvula HOM05D009821 ORTHO05D005964 1.9e-13 82.8 633 23.9
ECA233G2144 Erigeron canadensis HOM05D006657 ORTHO05D005964 2.5e-13 82.4 809 22.5
MD06G1124500 Malus domestica HOM05D013249 ORTHO05D011012 2.5e-13 82.4 538 23.4
Carub.0005s1582 Capsella rubella HOM05D009821 ORTHO05D005964 5.6e-13 81.3 528 24.8
BcaB01g00702 Brassica carinata HOM05D009821 ORTHO05D005964 2.1e-12 79.3 605 25.0
AT3G49490 Arabidopsis thaliana HOM05D009821 ORTHO05D005964 1.8e-11 76.3 224 31.2
Sabra11G0134500 Salix brachista HOM05D011672 ORTHO05D011012 5.3e-11 74.7 381 26.2
CARHR158490 Cardamine hirsuta HOM05D009821 ORTHO05D005964 1.2e-10 73.6 431 25.8
Lj1P1029T48 Lonicera japonica HOM05D006657 ORTHO05D005964 1.2e-10 73.6 131 35.9
Aa31LG11G3790 Aethionema arabicum HOM05D009821 ORTHO05D005964 1.5e-10 73.2 561 23.4
CiPaw.12G074500 Carya illinoinensis HOM05D011672 ORTHO05D011012 1.5e-10 73.2 402 26.6
BcaB05g23119 Brassica carinata HOM05D009821 ORTHO05D005964 2.0e-10 72.8 265 28.3
Thecc.03G215600 Theobroma cacao HOM05D011672 ORTHO05D011012 2.6e-10 72.4 455 25.3
A01p24720 Brassica napus HOM05D009821 ORTHO05D005964 3.4e-10 72.0 264 29.2
BraA01t02384Z Brassica rapa HOM05D009821 ORTHO05D005964 3.4e-10 72.0 264 29.2
Lj6g0008807 Lotus japonicus HOM05D013241 ORTHO05D011012 4.5e-10 71.6 428 27.1
CDE04G2546 Ceratophyllum demersum HOM05D006657 ORTHO05D005964 7.6e-10 70.9 655 22.0
AL5G29280 Arabidopsis lyrata HOM05D009821 ORTHO05D005964 1.0e-09 70.5 252 28.6
Duzib068G0278 Durio zibethinus HOM05D011672 ORTHO05D011012 1.3e-09 70.1 480 26.0
Eucgr.K00452 Eucalyptus grandis HOM05D006657 ORTHO05D005964 1.3e-09 70.1 611 23.9
unitig_0.g2439 Utricularia gibba HOM05D006657 ORTHO05D005964 1.3e-09 70.1 134 34.3
Potri.011G149601 Populus trichocarpa HOM05D011672 ORTHO05D011012 1.7e-09 69.7 548 24.3
BcaC07g39413 Brassica carinata HOM05D009821 ORTHO05D005964 2.2e-09 69.3 239 28.5
C08p24510 Brassica napus HOM05D009821 ORTHO05D005964 2.2e-09 69.3 523 22.8
BolC8t50069H Brassica oleracea HOM05D009821 ORTHO05D005964 2.2e-09 69.3 523 22.8
RcHm_v2.0_Chr7g0187831 Rosa chinensis HOM05D013249 ORTHO05D011012 1.4e-08 66.6 482 23.0
BcaC09g49952 Brassica carinata HOM05D009821 ORTHO05D005964 2.5e-08 65.9 241 29.5
BolC1t03016H Brassica oleracea HOM05D009821 ORTHO05D005964 2.5e-08 65.9 241 29.5
BcaC01g02410 Brassica carinata HOM05D009821 ORTHO05D005964 3.2e-08 65.5 554 24.5
C03p65560 Brassica napus HOM05D009821 ORTHO05D005964 4.2e-08 65.1 554 25.1
BolC3t18811H Brassica oleracea HOM05D009821 ORTHO05D005964 4.2e-08 65.1 554 25.1
C01p30840 Brassica napus HOM05D009821 ORTHO05D005964 5.5e-08 64.7 285 28.8
A06p18270 Brassica napus HOM05D009821 ORTHO05D005964 9.3e-08 63.9 683 23.4
BraA06t24910Z Brassica rapa HOM05D009821 ORTHO05D005964 1.2e-07 63.5 686 23.3
CDE02G0079 Ceratophyllum demersum HOM05D006657 ORTHO05D005964 1.2e-07 63.5 1056 21.8
Lalb_Chr18g0054711 Lupinus albus HOM05D013241 ORTHO05D011012 1.6e-07 63.2 422 25.8
BcaB02g09591 Brassica carinata HOM05D009821 ORTHO05D005964 4.6e-07 61.6 679 22.7
Glyma.13G227600 Glycine max HOM05D013241 ORTHO05D011012 1.0e-06 60.5 438 24.4
VMungo0540G2099 Vigna mungo HOM05D013241 ORTHO05D011012 1.0e-06 60.5 438 24.7
A06p28240 Brassica napus HOM05D009821 ORTHO05D005964 1.3e-06 60.1 465 23.4
BraA06t25767Z Brassica rapa HOM05D009821 ORTHO05D005964 1.3e-06 60.1 465 23.4
FAN04G0229 Fragaria x ananassa HOM05D013249 ORTHO05D011012 1.3e-06 60.1 470 24.0
arahy.Tifrunner.gnm1.ann1.62N0H4 Arachis hypogaea HOM05D000074 ORTHO05D011012 1.8e-06 59.7 415 24.1
COL.COLO4_10845 Corchorus olitorius HOM05D011672 ORTHO05D011012 2.3e-06 59.3 337 26.7
Prupe.5G135100 Prunus persica HOM05D013249 ORTHO05D011012 2.3e-06 59.3 213 29.1
Duzib084G0474 Durio zibethinus HOM05D011672 ORTHO05D011012 3.0e-06 58.9 379 25.3
Potri.002G230100 Populus trichocarpa HOM05D006657 ORTHO05D005964 3.0e-06 58.9 70 50.0
Cpa.g.sc37.109 Carica papaya HOM05D011672 ORTHO05D012736 5.1e-06 58.2 217 28.1
Phvul.006G174000 Phaseolus vulgaris HOM05D013241 ORTHO05D011012 5.1e-06 58.2 447 26.4
Potri.003G206701 Populus trichocarpa HOM05D006657 ORTHO05D005964 5.1e-06 58.2 70 48.6


User provided reference genes

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