Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016137 Carpinus fangiana HOM05D004394 ORTHO05D005208 1.1e-77 293.1 141 100.0
Haze_00323 Corylus avellana HOM05D004394 ORTHO05D005208 1.0e-30 137.1 109 67.0
CiPaw.08G045200 Carya illinoinensis HOM05D004394 ORTHO05D005208 3.7e-28 128.6 114 58.8
Cfa013636 Carpinus fangiana HOM05D004394 ORTHO05D005208 1.1e-27 127.1 115 58.3
QL12p036785 Quercus lobata HOM05D004394 ORTHO05D005208 1.5e-26 123.2 115 55.7
QL03p027611 Quercus lobata HOM05D004394 ORTHO05D005208 2.0e-26 122.9 116 55.2
Haze_22268 Corylus avellana HOM05D004394 ORTHO05D005208 2.6e-26 122.5 115 57.4
Prupe.1G517100 Prunus persica HOM05D004394 ORTHO05D005208 2.6e-26 122.5 115 54.8
SalBow7G2639 Salvia bowleyana HOM05D004394 ORTHO05D005208 3.4e-26 122.1 115 55.7
SalBow7G3516 Salvia bowleyana HOM05D004394 ORTHO05D005208 3.4e-26 122.1 115 55.7
Thecc.08G106700 Theobroma cacao HOM05D004394 ORTHO05D005208 3.4e-26 122.1 117 53.8
Duzib041G0085 Durio zibethinus HOM05D004394 ORTHO05D005208 4.5e-26 121.7 117 53.8
Gohir.A05G267200 Gossypium hirsutum HOM05D004394 ORTHO05D005208 5.9e-26 121.3 117 52.1
Gorai.009G281400 Gossypium raimondii HOM05D004394 ORTHO05D005208 5.9e-26 121.3 117 52.1
Gohir.D06G036200 Gossypium hirsutum HOM05D004394 ORTHO05D005208 7.7e-26 120.9 117 53.0
Gorai.010G040200 Gossypium raimondii HOM05D004394 ORTHO05D005208 7.7e-26 120.9 117 53.0
MD08G1182900 Malus domestica HOM05D004394 ORTHO05D005208 1.0e-25 120.6 115 53.9
Ciclev10003351m.g Citrus clementina HOM05D004394 ORTHO05D005208 1.3e-25 120.2 116 54.3
Potri.002G096600 Populus trichocarpa HOM05D004394 ORTHO05D005208 1.3e-25 120.2 115 53.0
Gohir.D05G268800 Gossypium hirsutum HOM05D004394 ORTHO05D005208 1.7e-25 119.8 117 51.3
MBI05_g37052_MAGBIO Magnolia biondii HOM05D004394 ORTHO05D005208 1.7e-25 119.8 115 53.0
GSVIVG01032524001 Vitis vinifera HOM05D004394 ORTHO05D005208 2.2e-25 119.4 115 53.0
Nn2g12152 Nelumbo nucifera HOM05D004394 ORTHO05D005208 2.9e-25 119.0 115 53.0
Sabra02G0076100 Salix brachista HOM05D004394 ORTHO05D005208 2.9e-25 119.0 115 52.2
Gohir.A06G035600 Gossypium hirsutum HOM05D004394 ORTHO05D005208 3.8e-25 118.6 117 52.1
MD15G1369300 Malus domestica HOM05D004394 ORTHO05D005208 3.8e-25 118.6 115 53.0
COL.COLO4_16398 Corchorus olitorius HOM05D004394 ORTHO05D005208 5.0e-25 118.2 117 52.1
Oeu046302.1 Olea europaea HOM05D004394 ORTHO05D005208 6.5e-25 117.9 115 53.0
Nn5g30107 Nelumbo nucifera HOM05D004394 ORTHO05D005208 8.5e-25 117.5 115 52.2
TAR376G0181 Trochodendron aralioides HOM05D004394 ORTHO05D005208 8.5e-25 117.5 115 51.3
MSTRG.25920 Avicennia marina HOM05D004394 ORTHO05D005208 1.1e-24 117.1 115 52.2
ClCG08G011100 Citrullus lanatus HOM05D004394 ORTHO05D005208 1.1e-24 117.1 115 52.2
Dinv36547 Davidia involucrata HOM05D004394 ORTHO05D005208 1.1e-24 117.1 114 53.5
SGA_v2.0_scaffold24G10492 Striga asiatica HOM05D004394 ORTHO05D005208 1.1e-24 117.1 115 52.2
Duzib093G0332 Durio zibethinus HOM05D004394 ORTHO05D005208 1.4e-24 116.7 117 51.3
Duzib093G1861 Durio zibethinus HOM05D004394 ORTHO05D005208 1.4e-24 116.7 117 51.3
Lsat_1_v5_gn_2_108521 Lactuca sativa HOM05D004394 ORTHO05D005208 1.4e-24 116.7 116 52.6
Psat2g179880 Pisum sativum HOM05D004394 ORTHO05D005208 1.4e-24 116.7 115 53.0
MELO3C011026.2 Cucumis melo HOM05D004394 ORTHO05D005208 2.5e-24 115.9 115 53.0
TAR628G0041 Trochodendron aralioides HOM05D004394 ORTHO05D005208 2.5e-24 115.9 115 50.4
Manes.08G094000 Manihot esculenta HOM05D004394 ORTHO05D005208 3.2e-24 115.5 115 53.9
unitig_899.g14554 Utricularia gibba HOM05D000298 ORTHO05D000553 3.2e-24 115.5 115 52.2
Actinidia10324 Actinidia chinensis HOM05D004394 ORTHO05D005208 4.2e-24 115.2 114 52.6
Cc10_g07190 Coffea canephora HOM05D004394 ORTHO05D005208 4.2e-24 115.2 115 51.3
FAN08G2022 Fragaria x ananassa HOM05D004394 ORTHO05D005208 4.2e-24 115.2 115 52.2
CDE06G0322 Ceratophyllum demersum HOM05D004394 ORTHO05D005208 5.5e-24 114.8 115 50.4
Actinidia30773 Actinidia chinensis HOM05D004394 ORTHO05D005208 7.2e-24 114.4 115 51.3
Ah.12g059310 Amaranthus hybridus HOM05D004394 ORTHO05D005208 7.2e-24 114.4 115 50.4
CsaV3_2G029680 Cucumis sativus L. HOM05D004394 ORTHO05D005208 7.2e-24 114.4 115 53.0
Medtr2g028730 Medicago truncatula HOM05D004394 ORTHO05D005208 7.2e-24 114.4 115 52.2
TPR.G17517 Trifolium pratense HOM05D004394 ORTHO05D005208 7.2e-24 114.4 115 52.2
Hma1.2p1_0575F.1_g181580 Hydrangea macrophylla HOM05D004394 ORTHO05D005208 9.4e-24 114.0 115 51.3
Solyc04g074150.3 Solanum lycopersicum HOM05D004394 ORTHO05D005208 9.4e-24 114.0 115 51.3
Sopen04g029330 Solanum pennellii HOM05D004394 ORTHO05D005208 9.4e-24 114.0 115 51.3
PGSC0003DMG400006413 Solanum tuberosum HOM05D004394 ORTHO05D005208 9.4e-24 114.0 115 51.3
CDE02G1736 Ceratophyllum demersum HOM05D004394 ORTHO05D005208 1.2e-23 113.6 115 50.4
ECA238G4620 Erigeron canadensis HOM05D004394 ORTHO05D005208 1.2e-23 113.6 116 50.0
Potri.005G165000 Populus trichocarpa HOM05D004394 ORTHO05D005208 1.2e-23 113.6 115 49.6
VMungo0720G0524 Vigna mungo HOM05D004394 ORTHO05D005208 1.2e-23 113.6 114 51.8
EL10Ac5g11858 Beta vulgaris HOM05D004394 ORTHO05D005208 1.6e-23 113.2 115 49.6
Ca_08121_v3 Cicer arietinum L. HOM05D004394 ORTHO05D005208 1.6e-23 113.2 115 51.3
Psat1g170200 Pisum sativum HOM05D004394 ORTHO05D005208 1.6e-23 113.2 115 51.3
Sabra05G0124400 Salix brachista HOM05D004394 ORTHO05D005208 1.6e-23 113.2 114 50.9
Atru.chr13.1186 Acer truncatum HOM05D004394 ORTHO05D005208 2.1e-23 112.8 116 51.7
AUR62027759 Chenopodium quinoa HOM05D004394 ORTHO05D005208 2.1e-23 112.8 115 49.6
Eucgr.D01128 Eucalyptus grandis HOM05D004394 ORTHO05D005208 2.1e-23 112.8 115 53.0
FAN13G1242 Fragaria x ananassa HOM05D004394 ORTHO05D005208 2.1e-23 112.8 115 51.3
RcHm_v2.0_Chr7g0238971 Rosa chinensis HOM05D004394 ORTHO05D005208 2.1e-23 112.8 115 52.2
Sp1g19780 Schrenkiella parvula HOM05D004394 ORTHO05D005208 2.1e-23 112.8 118 50.8
Sed0012623 Sechium edule HOM05D004394 ORTHO05D005208 2.1e-23 112.8 115 51.3
ATR0782G020 Amborella trichopoda HOM05D004394 ORTHO05D005208 2.7e-23 112.5 115 49.6
EL10Ac1g01214 Beta vulgaris HOM05D004394 ORTHO05D005208 2.7e-23 112.5 115 48.7
A07p14580 Brassica napus HOM05D004394 ORTHO05D005208 2.7e-23 112.5 139 46.0
Lalb_Chr11g0065431 Lupinus albus HOM05D004394 ORTHO05D005208 2.7e-23 112.5 115 51.3
Aqoxy6G00782 Aquilegia oxysepala HOM05D004394 ORTHO05D005208 3.6e-23 112.1 115 50.4
CSS0017732 Camellia sinensis var. sinensis HOM05D004394 ORTHO05D005208 3.6e-23 112.1 115 51.3
FvH4_5g37330 Fragaria vesca HOM05D004394 ORTHO05D005208 3.6e-23 112.1 115 51.3
FAN18G2812 Fragaria x ananassa HOM05D004394 ORTHO05D005208 3.6e-23 112.1 115 51.3
Nitab4.5_0000232g0200 Nicotiana tabacum HOM05D004394 ORTHO05D005208 3.6e-23 112.1 115 50.4
AUR62036356 Chenopodium quinoa HOM05D004394 ORTHO05D005208 4.6e-23 111.7 115 48.7
Ca_20267_v3 Cicer arietinum L. HOM05D004394 ORTHO05D005208 4.6e-23 111.7 115 50.4
CANSAT80G0901 Cannabis sativa HOM05D004394 ORTHO05D005208 6.1e-23 111.3 115 50.4
Glyma.20G173300 Glycine max HOM05D004394 ORTHO05D005208 6.1e-23 111.3 115 50.4
HanXRQChr07g0194691 Helianthus annuus HOM05D004394 ORTHO05D005208 6.1e-23 111.3 116 50.9
PGR042G0728 Punica granatum HOM05D004394 ORTHO05D005208 6.1e-23 111.3 115 51.3
BcaC05g26154 Brassica carinata HOM05D004394 ORTHO05D005208 7.9e-23 110.9 119 49.6
BcaC06g34947 Brassica carinata HOM05D004394 ORTHO05D005208 7.9e-23 110.9 118 49.2
C05p21390 Brassica napus HOM05D004394 ORTHO05D005208 7.9e-23 110.9 119 49.6
BolC7t42673H Brassica oleracea HOM05D004394 ORTHO05D005208 7.9e-23 110.9 118 49.2
BraA07t29204Z Brassica rapa HOM05D004394 ORTHO05D005208 7.9e-23 110.9 118 49.2
Phvul.007G087400 Phaseolus vulgaris HOM05D004394 ORTHO05D005208 7.9e-23 110.9 115 50.4
THA.LOC104800150 Tarenaya hassleriana HOM05D004394 ORTHO05D005208 7.9e-23 110.9 117 49.6
Lj2g0026973 Lotus japonicus HOM05D004394 ORTHO05D005208 1.0e-22 110.5 115 50.4
Oeu012929.1 Olea europaea HOM05D004394 ORTHO05D005208 1.0e-22 110.5 115 51.3
A09p42510 Brassica napus HOM05D004394 ORTHO05D005208 1.4e-22 110.2 120 49.2
C07p21470 Brassica napus HOM05D004394 ORTHO05D005208 1.4e-22 110.2 136 45.6
BraA09t39727Z Brassica rapa HOM05D004394 ORTHO05D005208 1.4e-22 110.2 120 49.2
CAN.G101.27 Capsicum annuum HOM05D004394 ORTHO05D005208 1.4e-22 110.2 115 49.6
Peaxi162Scf00041g00179 Petunia axillaris HOM05D004394 ORTHO05D005208 1.4e-22 110.2 115 49.6
Sc01g0000460 Simmondsia chinensis HOM05D004394 ORTHO05D005208 1.4e-22 110.2 115 49.6
BcaB07g32248 Brassica carinata HOM05D004394 ORTHO05D005208 1.8e-22 109.8 122 48.4
DCAR_008736 Daucus carota HOM05D004394 ORTHO05D005208 1.8e-22 109.8 116 49.1
Medtr1g050345 Medicago truncatula HOM05D004394 ORTHO05D005208 1.8e-22 109.8 115 49.6
Atru.chr5.2725 Acer truncatum HOM05D004394 ORTHO05D005208 3.0e-22 109.0 116 50.0
Cpa.g.sc53.145 Carica papaya HOM05D004394 ORTHO05D005208 3.0e-22 109.0 116 50.0
AUR62030717 Chenopodium quinoa HOM05D004394 ORTHO05D005208 3.0e-22 109.0 115 47.8
HanXRQChr04g0126451 Helianthus annuus HOM05D004394 ORTHO05D005208 3.0e-22 109.0 116 50.0
Lalb_Chr08g0242051 Lupinus albus HOM05D004394 ORTHO05D005208 3.0e-22 109.0 115 50.4
Phvul.002G138800 Phaseolus vulgaris HOM05D004394 ORTHO05D005208 3.0e-22 109.0 115 49.6
TPR.G10620 Trifolium pratense HOM05D004394 ORTHO05D005208 3.0e-22 109.0 115 48.7
Carub.0001s2182 Capsella rubella HOM05D004394 ORTHO05D005208 3.9e-22 108.6 117 49.6
CANSAT80G2869 Cannabis sativa HOM05D004394 ORTHO05D005208 5.1e-22 108.2 115 48.7
CARHR022650 Cardamine hirsuta HOM05D004394 ORTHO05D005208 6.7e-22 107.8 117 49.6
AL1G35720 Arabidopsis lyrata HOM05D004394 ORTHO05D005208 8.8e-22 107.5 117 48.7
Glyma.10G218300 Glycine max HOM05D004394 ORTHO05D005208 1.1e-21 107.1 115 49.6
Migut.C01173 Erythranthe guttata HOM05D004394 ORTHO05D005208 1.5e-21 106.7 115 48.7
Cpa.g.sc36.132 Carica papaya HOM05D004394 ORTHO05D005208 2.0e-21 106.3 116 49.1
THA.LOC104809715 Tarenaya hassleriana HOM05D004394 ORTHO05D005208 2.0e-21 106.3 117 48.7
TWI12G1259 Tripterygium wilfordii HOM05D004394 ORTHO05D005208 2.0e-21 106.3 116 50.0
Thhalv10009116m.g Eutrema salsugineum HOM05D004394 ORTHO05D005208 2.6e-21 105.9 118 47.5
AT1G22270 Arabidopsis thaliana HOM05D004394 ORTHO05D005208 3.3e-21 105.5 117 47.9
BolC5t30836H Brassica oleracea HOM05D004394 ORTHO05D005208 4.4e-21 105.1 119 47.9
Thhalv10019322m.g Eutrema salsugineum HOM05D004394 ORTHO05D005208 4.4e-21 105.1 117 47.9
TWI36G1364 Tripterygium wilfordii HOM05D004394 ORTHO05D005208 5.7e-21 104.8 116 46.6
Aa31LG7G6210 Aethionema arabicum HOM05D004394 ORTHO05D005208 2.2e-20 102.8 117 47.0
AL2G38520 Arabidopsis lyrata HOM05D004394 ORTHO05D005208 2.2e-20 102.8 117 47.0
SEGI_05614 Sequoiadendron giganteum HOM05D004394 ORTHO05D005208 2.2e-20 102.8 115 46.1
Sp5g33330 Schrenkiella parvula HOM05D004394 ORTHO05D005208 2.8e-20 102.4 117 47.0
CARHR071660 Cardamine hirsuta HOM05D004394 ORTHO05D005208 3.7e-20 102.1 117 45.3
C06p52130 Brassica napus HOM05D003496 ORTHO05D003909 6.3e-20 101.3 127 43.3
BolC6t40236H Brassica oleracea HOM05D003496 ORTHO05D003909 6.3e-20 101.3 127 43.3
PSO541G5821 Papaver somniferum HOM05D004394 ORTHO05D005208 6.3e-20 101.3 115 47.8
PSO781G0205 Papaver somniferum HOM05D004394 ORTHO05D005208 6.3e-20 101.3 115 47.8
SHI20485 Sapria himalayana HOM05D004394 ORTHO05D005208 1.1e-19 100.5 135 45.9
Pp3c10_8220 Physcomitrium patens HOM05D004394 ORTHO05D005208 4.1e-19 98.6 115 45.2
SMO356G0508 Selaginella moellendorffii HOM05D004394 ORTHO05D005208 4.1e-19 98.6 115 47.8
Nn4g22250 Nelumbo nucifera HOM05D004394 ORTHO05D005208 5.3e-19 98.2 109 45.9
AT1G78190 Arabidopsis thaliana HOM05D004394 ORTHO05D005208 2.0e-18 96.3 117 45.3
BcaB03g15991 Brassica carinata HOM05D004394 ORTHO05D005208 2.6e-18 95.9 117 44.4
Rhsim06G0082000 Rhododendron simsii HOM05D004394 ORTHO05D005208 2.6e-18 95.9 109 44.0
BcaC08g47394 Brassica carinata HOM05D004394 ORTHO05D005208 4.5e-18 95.1 114 44.7
Nitab4.5_0005777g0070 Nicotiana tabacum HOM05D004394 ORTHO05D005208 5.9e-18 94.7 122 42.6
Cpa.g.sc247.5 Carica papaya HOM05D004394 ORTHO05D005208 1.0e-17 94.0 115 45.2
CBR_g44926 Chara braunii HOM05D004394 ORTHO05D005208 1.0e-17 94.0 115 41.7
A07p43490 Brassica napus HOM05D003496 ORTHO05D003909 1.3e-17 93.6 113 44.2
BraA07t31861Z Brassica rapa HOM05D003496 ORTHO05D003909 2.2e-17 92.8 113 44.2
Carub.0002s2509 Capsella rubella HOM05D004394 ORTHO05D005208 2.2e-17 92.8 115 43.5
CANSAT80G2909 Cannabis sativa HOM05D004394 ORTHO05D005208 6.5e-17 91.3 108 43.5
BcaB03g14221 Brassica carinata HOM05D004394 ORTHO05D005208 8.5e-17 90.9 106 46.2
CANSAT35G1737 Cannabis sativa HOM05D004394 ORTHO05D005208 1.1e-16 90.5 141 39.0
Zm00001eb109660 Zea mays HOM05D004394 ORTHO05D005208 5.5e-16 88.2 124 35.5
Nn6g33602 Nelumbo nucifera HOM05D004394 ORTHO05D005208 7.2e-16 87.8 109 44.0
Cre12.g512550 Chlamydomonas reinhardtii HOM05D004394 ORTHO05D005208 2.7e-15 85.9 115 40.9
Os07g0623000 Oryza sativa ssp. japonica HOM05D004394 ORTHO05D005208 7.9e-15 84.3 126 36.5
AagrBONN_evm.TU.Sc2ySwM_344.4664 Anthoceros agrestis HOM05D004394 ORTHO05D005208 5.2e-14 81.6 113 38.9
CiPaw.07G180000 Carya illinoinensis HOM05D004394 ORTHO05D005208 1.5e-13 80.1 98 43.9
MCO01G362 Micromonas commoda HOM05D004394 ORTHO05D005208 2.0e-13 79.7 115 37.4
AUR62038524 Chenopodium quinoa HOM05D004394 ORTHO05D005208 2.8e-12 75.9 87 46.0
Mapoly0008s0078 Marchantia polymorpha HOM05D004394 ORTHO05D005208 2.4e-11 72.8 39 76.9
SEGI_26774 Sequoiadendron giganteum HOM05D004394 ORTHO05D005208 3.1e-11 72.4 50 66.0
Haze_27710 Corylus avellana HOM05D004394 ORTHO05D005208 1.2e-10 70.5 108 36.1
Cpa.g.sc257.3 Carica papaya HOM05D004394 ORTHO05D005208 1.6e-10 70.1 96 43.8
PRCOL_00005343 Prasinoderma coloniale HOM05D004394 ORTHO05D005208 5.9e-10 68.2 124 33.1
Lsat_1_v5_gn_4_16040 Lactuca sativa HOM05D004394 ORTHO05D005208 4.2e-08 62.0 40 65.0
QL05p087667 Quercus lobata HOM05D004394 ORTHO05D000126 2.7e-07 59.3 28 89.3
Nn1g03585 Nelumbo nucifera HOM05D004394 ORTHO05D005208 4.7e-07 58.5 33 72.7
HanXRQChr03g0069311 Helianthus annuus HOM05D004394 ORTHO05D005208 1.4e-06 57.0 33 69.7


User provided reference genes

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