Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016123 Carpinus fangiana HOM05D004773 ORTHO05D005943 3.5e-180 634.8 313 100.0
Haze_00339 Corylus avellana HOM05D004773 ORTHO05D005943 1.3e-171 606.3 313 95.5
CiPaw.05G210200 Carya illinoinensis HOM05D004773 ORTHO05D005943 8.4e-158 560.5 313 87.5
QL09p005927 Quercus lobata HOM05D004773 ORTHO05D005943 1.1e-154 550.1 312 86.9
Ciclev10032178m.g Citrus clementina HOM05D004773 ORTHO05D005943 4.5e-135 485.0 313 74.8
Manes.08G158200 Manihot esculenta HOM05D004773 ORTHO05D005943 5.5e-133 478.0 308 74.0
Thecc.05G229300 Theobroma cacao HOM05D004773 ORTHO05D005943 3.9e-131 471.9 308 73.7
Gohir.D11G235500 Gossypium hirsutum HOM05D004773 ORTHO05D005943 2.5e-130 469.2 307 72.0
Atru.chr2.1725 Acer truncatum HOM05D004773 ORTHO05D005943 4.3e-130 468.4 311 72.3
Duzib128G1941 Durio zibethinus HOM05D004773 ORTHO05D005943 4.3e-130 468.4 308 73.4
Gorai.007G248200 Gossypium raimondii HOM05D004773 ORTHO05D005943 4.3e-130 468.4 307 72.0
MD15G1141100 Malus domestica HOM05D004773 ORTHO05D005943 7.4e-130 467.6 304 76.3
arahy.Tifrunner.gnm1.ann1.WJU3K5 Arachis hypogaea HOM05D004773 ORTHO05D005943 1.8e-128 463.0 309 72.5
TWI32G1059 Tripterygium wilfordii HOM05D004773 ORTHO05D005943 1.8e-128 463.0 310 72.3
TAR317G0002 Trochodendron aralioides HOM05D004773 ORTHO05D005943 1.8e-128 463.0 310 72.9
Cpa.g.sc73.89 Carica papaya HOM05D004773 ORTHO05D005943 5.3e-128 461.5 311 71.1
Lj1P1212T41 Lonicera japonica HOM05D004773 ORTHO05D005943 5.3e-128 461.5 313 70.9
Lj2g0008141 Lotus japonicus HOM05D004773 ORTHO05D005943 1.5e-127 459.9 312 71.2
AL6G28660 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 2.6e-127 459.1 311 70.4
Lalb_Chr06g0173871 Lupinus albus HOM05D004773 ORTHO05D005943 3.4e-127 458.8 312 71.8
Carub.0006s1581 Capsella rubella HOM05D004773 ORTHO05D005943 1.1e-125 453.8 310 70.3
Medtr6g033025 Medicago truncatula HOM05D004773 ORTHO05D005943 2.5e-125 452.6 312 69.6
Ca_04503_v3 Cicer arietinum L. HOM05D004773 ORTHO05D005943 4.2e-125 451.8 312 70.5
Thhalv10014121m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 4.2e-125 451.8 310 71.0
Sp6g26650 Schrenkiella parvula HOM05D004773 ORTHO05D005943 4.2e-125 451.8 312 71.5
Prupe.7G272000 Prunus persica HOM05D004773 ORTHO05D005943 9.4e-125 450.7 304 73.7
AUR62016916 Chenopodium quinoa HOM05D004773 ORTHO05D005943 1.6e-124 449.9 312 68.6
C09p59580 Brassica napus HOM05D004773 ORTHO05D005943 2.1e-124 449.5 310 70.3
BcaB08g36761 Brassica carinata HOM05D004773 ORTHO05D005943 2.7e-124 449.1 313 70.6
BcaC04g18778 Brassica carinata HOM05D004773 ORTHO05D005943 4.7e-124 448.4 310 70.0
BolC9t58797H Brassica oleracea HOM05D004773 ORTHO05D005943 4.7e-124 448.4 310 70.0
AUR62014736 Chenopodium quinoa HOM05D004773 ORTHO05D005943 6.1e-124 448.0 307 68.7
CsaV3_3G010040 Cucumis sativus L. HOM05D004773 ORTHO05D005943 6.1e-124 448.0 304 71.4
Actinidia11804 Actinidia chinensis HOM05D004773 ORTHO05D005943 7.9e-124 447.6 314 69.7
AT5G17570 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 7.9e-124 447.6 309 68.9
Hund21271 Selenicereus undatus HOM05D004773 ORTHO05D005943 1.4e-123 446.8 310 68.1
MELO3C006226.2 Cucumis melo HOM05D004773 ORTHO05D005943 2.3e-123 446.0 304 71.4
Psat1g096800 Pisum sativum HOM05D004773 ORTHO05D005943 3.0e-123 445.7 311 69.8
Oeu053928.1 Olea europaea HOM05D004773 ORTHO05D005943 3.9e-123 445.3 313 68.1
MBI04_g12483_MAGBIO Magnolia biondii HOM05D004773 ORTHO05D005943 8.8e-123 444.1 311 68.8
Sed0007971 Sechium edule HOM05D004773 ORTHO05D005943 1.5e-122 443.4 305 71.1
Potri.013G073800 Populus trichocarpa HOM05D004773 ORTHO05D005943 2.6e-122 442.6 297 73.4
vmacro15870 Vaccinium macrocarpon HOM05D004773 ORTHO05D005943 3.3e-122 442.2 309 70.2
Aqoxy5G04203 Aquilegia oxysepala HOM05D004773 ORTHO05D005943 7.4e-122 441.0 304 71.4
A10p21830 Brassica napus HOM05D004773 ORTHO05D008759 1.7e-121 439.9 305 69.5
THA.LOC104802901 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 2.8e-121 439.1 308 68.2
Sabra13G0063900 Salix brachista HOM05D004773 ORTHO05D008759 5.9e-119 431.4 307 69.7
Nn2g15176 Nelumbo nucifera HOM05D004773 ORTHO05D005943 1.0e-118 430.6 313 66.1
Cc02_g12570 Coffea canephora HOM05D004773 ORTHO05D005943 6.5e-118 427.9 307 68.4
ClCG05G002600 Citrullus lanatus HOM05D004773 ORTHO05D005943 8.5e-118 427.6 352 62.2
Sc17g0006500 Simmondsia chinensis HOM05D004773 ORTHO05D005943 1.4e-117 426.8 309 66.7
Rhsim02G0120400 Rhododendron simsii HOM05D000873 ORTHO05D002948 1.9e-117 426.4 312 67.9
Hma1.2p1_0144F.1_g064840 Hydrangea macrophylla HOM05D004773 ORTHO05D005943 7.2e-117 424.5 312 66.7
ECA234G3816 Erigeron canadensis HOM05D004773 ORTHO05D005943 2.7e-116 422.5 309 66.3
Nitab4.5_0003676g0020 Nicotiana tabacum HOM05D004773 ORTHO05D005943 3.9e-115 418.7 312 63.5
GSVIVG01019376001 Vitis vinifera HOM05D004773 ORTHO05D005943 5.7e-114 414.8 292 70.2
Nitab4.5_0005399g0010 Nicotiana tabacum HOM05D004773 ORTHO05D005943 7.4e-114 414.5 312 63.8
DCAR_024890 Daucus carota HOM05D004773 ORTHO05D005943 4.8e-113 411.8 311 63.7
Peaxi162Scf00527g00065 Petunia axillaris HOM05D004773 ORTHO05D005943 6.3e-113 411.4 312 64.4
MSTRG.7300 Avicennia marina HOM05D004773 ORTHO05D005943 1.8e-112 409.8 313 63.6
CDE07G0301 Ceratophyllum demersum HOM05D004773 ORTHO05D005943 9.1e-112 407.5 312 64.1
Aa31LG11G12090 Aethionema arabicum HOM05D004773 ORTHO05D005943 3.5e-111 405.6 310 64.8
Glyma.16G151100 Glycine max HOM05D004773 ORTHO05D005943 1.0e-110 404.1 275 70.5
HanXRQChr17g0555701 Helianthus annuus HOM05D004773 ORTHO05D005943 1.0e-110 404.1 311 63.7
Solyc02g078980.3 Solanum lycopersicum HOM05D004773 ORTHO05D005943 2.2e-110 402.9 312 63.1
arahy.Tifrunner.gnm1.ann1.KNV4WG Arachis hypogaea HOM05D004773 ORTHO05D005943 5.0e-110 401.7 309 64.7
ATR0620G003 Amborella trichopoda HOM05D004773 ORTHO05D005943 6.5e-110 401.4 308 64.6
SalBow8G5056 Salvia bowleyana HOM05D004773 ORTHO05D005943 2.5e-109 399.4 311 62.4
PSO063G3794 Papaver somniferum HOM05D004773 ORTHO05D005943 3.2e-109 399.1 310 65.5
CANSAT01G2664 Cannabis sativa HOM05D004773 ORTHO05D005943 9.4e-109 397.5 304 64.5
Sopen02g023790 Solanum pennellii HOM05D004773 ORTHO05D005943 2.1e-108 396.4 311 62.4
Lsat_1_v5_gn_4_57340 Lactuca sativa HOM05D004773 ORTHO05D005943 2.7e-108 396.0 313 60.4
Eucgr.F01970 Eucalyptus grandis HOM05D004773 ORTHO05D005943 4.7e-108 395.2 307 62.9
PGSC0003DMG400022363 Solanum tuberosum HOM05D004773 ORTHO05D005943 4.7e-108 395.2 312 62.2
Migut.M01200 Erythranthe guttata HOM05D004773 ORTHO05D005943 8.0e-108 394.4 314 62.4
FAN14G1019 Fragaria x ananassa HOM05D004773 ORTHO05D005943 5.2e-107 391.7 306 66.7
PGR102G2546 Punica granatum HOM05D004773 ORTHO05D005943 8.8e-107 391.0 302 64.2
FAN05G1629 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.5e-106 390.2 306 66.3
CAN.G1181.18 Capsicum annuum HOM05D004773 ORTHO05D005943 2.6e-106 389.4 311 61.4
FAN14G4391 Fragaria x ananassa HOM05D004773 ORTHO05D005943 4.4e-106 388.7 303 67.3
FvH4_6g13930 Fragaria vesca HOM05D004773 ORTHO05D005943 1.3e-105 387.1 306 66.0
FAN05G3354 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.7e-105 386.7 305 66.2
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.7e-105 386.7 305 66.2
FAN02G0119 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.2e-105 386.3 306 66.0
FAN09G4020 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.2e-105 386.3 306 66.0
FvH4_6g14060 Fragaria vesca HOM05D004773 ORTHO05D005943 2.8e-105 386.0 306 65.7
FAN09G3809 Fragaria x ananassa HOM05D004773 ORTHO05D005943 4.8e-105 385.2 306 65.4
Gohir.A11G222000 Gossypium hirsutum HOM05D004773 ORTHO05D005943 5.3e-104 381.7 236 74.6
Phvul.004G078000 Phaseolus vulgaris HOM05D004773 ORTHO05D005943 9.1e-104 380.9 287 65.9
HanXRQChr12g0364651 Helianthus annuus HOM05D004773 ORTHO05D005943 2.0e-103 379.8 311 60.5
CARHR195610 Cardamine hirsuta HOM05D004773 ORTHO05D005943 1.3e-102 377.1 267 68.5
ECA234G0571 Erigeron canadensis HOM05D000140 ORTHO05D000087 2.2e-102 376.3 309 59.5
THA.LOC104802900 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 2.9e-102 375.9 307 60.6
Eucgr.F01964 Eucalyptus grandis HOM05D004773 ORTHO05D005943 6.5e-102 374.8 313 60.1
FAN09G2979 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.5e-101 373.6 302 64.6
HPP92_001431 Vanilla planifolia HOM05D004773 ORTHO05D005943 7.2e-101 371.3 313 59.4
HPP92_001439 Vanilla planifolia HOM05D004773 ORTHO05D005943 1.8e-99 366.7 315 58.4
Os04g0577500 Oryza sativa ssp. japonica HOM05D004773 ORTHO05D005943 5.2e-99 365.2 311 58.8
TPR.G6097 Trifolium pratense HOM05D004773 ORTHO05D005943 3.4e-98 362.5 313 62.0
SGA_v2.0_scaffold114G31969 Striga asiatica HOM05D004773 ORTHO05D005943 1.3e-97 360.5 309 56.6
Cc02_g14730 Coffea canephora HOM05D004773 ORTHO05D005943 4.8e-97 358.6 308 58.4
Zm00001eb073330 Zea mays HOM05D004773 ORTHO05D005943 2.4e-96 356.3 310 56.8
AL3G12620 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 5.4e-96 355.1 308 56.5
AUR62014585 Chenopodium quinoa HOM05D004773 ORTHO05D005943 5.4e-96 355.1 308 58.8
Carub.0003s0264 Capsella rubella HOM05D004773 ORTHO05D005943 9.1e-96 354.4 312 55.1
Duzib177G1208 Durio zibethinus HOM05D004773 ORTHO05D005943 1.0e-94 350.9 307 57.3
Aa31LG5G14030 Aethionema arabicum HOM05D004773 ORTHO05D005943 3.8e-94 349.0 312 54.5
Thecc.05G229900 Theobroma cacao HOM05D004773 ORTHO05D005943 8.6e-94 347.8 308 57.1
SHI39094 Sapria himalayana HOM05D004773 ORTHO05D005943 4.2e-93 345.5 355 50.4
AUR62012595 Chenopodium quinoa HOM05D004773 ORTHO05D005943 5.5e-93 345.1 233 67.8
A06p26410 Brassica napus HOM05D004773 ORTHO05D005943 8.9e-91 337.8 308 52.9
BNapus_Darmor_BZH_scaffold_78p00160 Brassica napus HOM05D004773 ORTHO05D005943 8.9e-91 337.8 308 52.9
Gohir.D13G163600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 1.2e-90 337.4 307 55.0
Gohir.A13G158600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 1.3e-89 334.0 307 55.0
BNapus_Darmor_BZH_scaffold_162p00180 Brassica napus HOM05D004773 ORTHO05D005943 2.2e-89 333.2 309 52.8
BolC1t05828H Brassica oleracea HOM05D004773 ORTHO05D005943 2.2e-89 333.2 309 52.8
BraA01t04577Z Brassica rapa HOM05D004773 ORTHO05D005943 2.8e-89 332.8 310 52.6
Dinv40507 Davidia involucrata HOM05D004773 ORTHO05D005943 1.4e-88 330.5 310 60.0
PSO063G1994 Papaver somniferum HOM05D004773 ORTHO05D005943 3.5e-87 325.9 309 53.1
Pp3c12_11300 Physcomitrium patens HOM05D004773 ORTHO05D005943 5.9e-87 325.1 311 50.8
Gorai.013G199600 Gossypium raimondii HOM05D004773 ORTHO05D005943 1.0e-86 324.3 307 53.7
FAN02G4326 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.3e-86 323.9 208 75.5
SMO367G0365 Selaginella moellendorffii HOM05D004773 ORTHO05D005943 1.0e-83 314.3 307 50.8
AagrBONN_evm.TU.Sc2ySwM_362.2127 Anthoceros agrestis HOM05D004773 ORTHO05D005943 8.3e-81 304.7 309 48.9
PSO782G1422 Papaver somniferum HOM05D004773 ORTHO05D005943 2.4e-80 303.1 183 76.5
BcaC09g47749 Brassica carinata HOM05D004773 ORTHO05D005943 7.0e-80 301.6 321 47.4
Mapoly0004s0110 Marchantia polymorpha HOM05D004773 ORTHO05D005943 1.6e-79 300.4 309 49.8
CBR_g32162 Chara braunii HOM05D004773 ORTHO05D001111 8.0e-76 288.1 314 49.4
AT3G03500 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 1.5e-74 283.9 196 64.8
AUR62014597 Chenopodium quinoa HOM05D004773 ORTHO05D005943 7.8e-71 271.6 225 60.0
Thhalv10021316m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 5.1e-70 268.9 261 50.6
unitig_37.g12340 Utricularia gibba HOM05D004773 ORTHO05D005943 1.7e-57 227.3 150 68.7
COL.COLO4_31152 Corchorus olitorius HOM05D007715 ORTHO05D009760 2.7e-55 219.9 208 57.7
COL.COLO4_31150 Corchorus olitorius HOM05D004773 ORTHO05D005943 1.1e-53 214.5 144 68.1
VMungo0464G0773 Vigna mungo HOM05D004773 ORTHO05D005943 3.3e-53 213.0 163 67.5
VMungo0464G1467 Vigna mungo HOM05D004773 ORTHO05D005943 5.6e-53 212.2 171 57.9
Sp3g02490 Schrenkiella parvula HOM05D004773 ORTHO05D005943 1.7e-46 190.7 344 35.2
RcHm_v2.0_Chr3g0466941 Rosa chinensis HOM05D004773 ORTHO05D005943 2.8e-36 156.8 161 56.5
CAN.G1247.2 Capsicum annuum HOM05D004773 ORTHO05D005943 5.8e-34 149.1 278 33.5
PRCOL_00005876 Prasinoderma coloniale HOM05D004773 ORTHO05D005943 7.6e-26 122.1 260 32.3
SEGI_00738 Sequoiadendron giganteum HOM05D004773 ORTHO05D005943 3.8e-25 119.8 140 47.9
HPP92_010162 Vanilla planifolia HOM05D004773 ORTHO05D005943 8.4e-25 118.6 77 64.9
Cre17.g717200 Chlamydomonas reinhardtii HOM05D004773 ORTHO05D005943 1.3e-22 111.3 263 31.2
MCO10G115 Micromonas commoda HOM05D004773 ORTHO05D005943 1.3e-22 111.3 229 31.0
Glyma.16G150900 Glycine max HOM05D004773 ORTHO05D005943 4.1e-19 99.8 89 57.3
Nn2g15177 Nelumbo nucifera HOM05D004773 ORTHO05D005943 9.0e-19 98.6 101 54.5
AUR62014598 Chenopodium quinoa HOM05D004773 ORTHO05D005943 5.0e-17 92.8 90 53.3
AL6G10940 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 1.4e-14 84.7 68 54.4
TPR.G35071 Trifolium pratense HOM05D004773 ORTHO05D005943 2.3e-14 84.0 52 69.2
PGSC0003DMG400004239 Solanum tuberosum HOM05D004773 ORTHO05D005943 5.1e-14 82.8 51 64.7
AL3G13200 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 9.7e-13 78.6 49 65.3
Pp3c8_2710 Physcomitrium patens HOM05D004773 ORTHO05D005943 2.9e-09 67.0 94 35.1
SEGI_31644 Sequoiadendron giganteum HOM05D004773 ORTHO05D005943 2.5e-08 63.9 53 56.6
Cre02.g085650 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D006645 6.1e-07 59.3 233 28.8
Glyma.09G113200 Glycine max HOM05D004773 ORTHO05D005943 7.9e-07 58.9 50 52.0


User provided reference genes

Program Settings