Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016120 Carpinus fangiana HOM05D006461 ORTHO05D008199 5.0e-94 347.8 183 100.0
Haze_00341 Corylus avellana HOM05D006461 ORTHO05D000508 8.6e-70 267.3 229 68.6
QL09p005902 Quercus lobata HOM05D006461 ORTHO05D008199 5.4e-64 248.1 179 77.1
CiPaw.05G210400 Carya illinoinensis HOM05D006461 ORTHO05D008199 3.6e-60 235.3 181 76.2
CiPaw.06G037900 Carya illinoinensis HOM05D006461 ORTHO05D008199 5.8e-58 228.0 180 72.2
Ciclev10032825m.g Citrus clementina HOM05D006461 ORTHO05D008199 1.9e-48 196.4 194 60.8
Atru.chr2.1733 Acer truncatum HOM05D006461 ORTHO05D008199 5.1e-46 188.3 185 61.1
TWI32G0808 Tripterygium wilfordii HOM05D006461 ORTHO05D008199 1.2e-44 183.7 183 59.0
TAR375G0815 Trochodendron aralioides HOM05D006461 ORTHO05D008199 1.6e-44 183.3 181 62.4
Nn3g19117 Nelumbo nucifera HOM05D006461 ORTHO05D008199 6.9e-43 177.9 178 60.1
Manes.08G158500 Manihot esculenta HOM05D006461 ORTHO05D008199 1.5e-42 176.8 142 69.7
Prupe.1G398900 Prunus persica HOM05D006461 ORTHO05D008199 2.6e-42 176.0 187 58.8
arahy.Tifrunner.gnm1.ann1.8SK5FU Arachis hypogaea HOM05D006461 ORTHO05D008199 3.4e-42 175.6 96 91.7
arahy.Tifrunner.gnm1.ann1.W7YZT9 Arachis hypogaea HOM05D006461 ORTHO05D008199 3.4e-42 175.6 96 91.7
Potri.013G074100 Populus trichocarpa HOM05D006461 ORTHO05D008199 1.7e-41 173.3 120 77.5
Manes.09G131300 Manihot esculenta HOM05D006461 ORTHO05D008199 8.4e-41 171.0 190 57.4
Glyma.02G000900 Glycine max HOM05D006461 ORTHO05D008199 1.1e-40 170.6 104 82.7
Thecc.05G228900 Theobroma cacao HOM05D006461 ORTHO05D008199 1.4e-40 170.2 187 55.6
CANSAT54G2891 Cannabis sativa HOM05D006461 ORTHO05D008199 1.9e-40 169.9 185 57.3
Medtr1g040145 Medicago truncatula HOM05D006461 ORTHO05D008199 3.2e-40 169.1 100 84.0
Ca_26296_v3 Cicer arietinum L. HOM05D006461 ORTHO05D008199 4.2e-40 168.7 97 87.6
TWI60G1716 Tripterygium wilfordii HOM05D006461 ORTHO05D008199 7.1e-40 167.9 189 56.1
BcaB01g05208 Brassica carinata HOM05D006461 ORTHO05D008199 9.3e-40 167.5 177 55.4
C03p09820 Brassica napus HOM05D006461 ORTHO05D008199 9.3e-40 167.5 177 55.4
BolC3t13470H Brassica oleracea HOM05D006461 ORTHO05D008199 9.3e-40 167.5 177 55.4
Lj6g0024347 Lotus japonicus HOM05D006461 ORTHO05D008199 9.3e-40 167.5 96 86.5
VMungo0720G0947 Vigna mungo HOM05D006461 ORTHO05D008199 1.2e-39 167.2 175 58.9
TPR.G30220 Trifolium pratense HOM05D006461 ORTHO05D008199 1.6e-39 166.8 174 58.0
CARHR195620 Cardamine hirsuta HOM05D006461 ORTHO05D008199 2.1e-39 166.4 176 58.0
Sed0021956 Sechium edule HOM05D006461 ORTHO05D008199 2.1e-39 166.4 144 66.7
ClCG01G005420 Citrullus lanatus HOM05D006461 ORTHO05D008199 2.7e-39 166.0 100 86.0
Sopen03g028120 Solanum pennellii HOM05D006461 ORTHO05D008199 3.5e-39 165.6 111 80.2
Carub.0006s1580 Capsella rubella HOM05D006461 ORTHO05D008199 4.6e-39 165.2 175 56.6
Thhalv10014786m.g Eutrema salsugineum HOM05D006461 ORTHO05D008199 4.6e-39 165.2 181 56.9
AL6G28650 Arabidopsis lyrata HOM05D006461 ORTHO05D008199 6.0e-39 164.9 177 58.2
FvH4_4g10840 Fragaria vesca HOM05D006461 ORTHO05D008199 6.0e-39 164.9 106 82.1
FAN12G0004 Fragaria x ananassa HOM05D006461 ORTHO05D008199 6.0e-39 164.9 102 84.3
PGSC0003DMG400026478 Solanum tuberosum HOM05D006461 ORTHO05D008199 7.8e-39 164.5 111 81.1
THA.LOC104802902 Tarenaya hassleriana HOM05D006461 ORTHO05D008199 7.8e-39 164.5 196 55.6
Duzib106G1824 Durio zibethinus HOM05D006461 ORTHO05D008199 1.3e-38 163.7 105 80.0
MELO3C005387.2 Cucumis melo HOM05D006461 ORTHO05D008199 1.7e-38 163.3 112 77.7
CsaV3_5G005660 Cucumis sativus L. HOM05D006461 ORTHO05D008199 1.7e-38 163.3 112 77.7
Solyc03g097360.3 Solanum lycopersicum HOM05D006461 ORTHO05D008199 1.7e-38 163.3 182 57.7
RcHm_v2.0_Chr4g0406641 Rosa chinensis HOM05D006461 ORTHO05D008199 2.3e-38 162.9 183 56.3
Psat6g101920 Pisum sativum HOM05D006461 ORTHO05D008199 3.0e-38 162.5 95 84.2
PGR119G0757 Punica granatum HOM05D006461 ORTHO05D008199 3.0e-38 162.5 98 85.7
C09p59590 Brassica napus HOM05D006461 ORTHO05D008199 3.9e-38 162.2 173 54.3
CAN.G732.29 Capsicum annuum HOM05D006461 ORTHO05D008199 3.9e-38 162.2 99 85.9
Nitab4.5_0000021g0870 Nicotiana tabacum HOM05D006461 ORTHO05D008199 3.9e-38 162.2 94 89.4
BcaB01g04940 Brassica carinata HOM05D006461 ORTHO05D008199 5.1e-38 161.8 180 54.4
A10p21840 Brassica napus HOM05D006461 ORTHO05D008199 5.1e-38 161.8 179 55.3
Gohir.D13G163800 Gossypium hirsutum HOM05D006461 ORTHO05D008199 5.1e-38 161.8 98 82.7
PSO063G2738 Papaver somniferum HOM05D006461 ORTHO05D008199 5.1e-38 161.8 165 57.6
Aqoxy3G01574 Aquilegia oxysepala HOM05D006461 ORTHO05D008199 6.6e-38 161.4 91 89.0
BcaC04g18779 Brassica carinata HOM05D006461 ORTHO05D008199 6.6e-38 161.4 176 54.5
MD08G1049500 Malus domestica HOM05D006461 ORTHO05D008199 6.6e-38 161.4 186 55.9
Nitab4.5_0005545g0020 Nicotiana tabacum HOM05D006461 ORTHO05D008199 6.6e-38 161.4 94 88.3
Gorai.013G199400 Gossypium raimondii HOM05D006461 ORTHO05D008199 8.7e-38 161.0 98 82.7
Sp6g26660 Schrenkiella parvula HOM05D006461 ORTHO05D008199 8.7e-38 161.0 181 54.1
FAN17G2347 Fragaria x ananassa HOM05D006461 ORTHO05D008199 1.1e-37 160.6 174 56.9
Gohir.A13G158700 Gossypium hirsutum HOM05D006461 ORTHO05D008199 1.5e-37 160.2 99 81.8
Peaxi162Scf00516g00428 Petunia axillaris HOM05D006461 ORTHO05D008199 1.5e-37 160.2 100 87.0
A03p08420 Brassica napus HOM05D006461 ORTHO05D008199 1.9e-37 159.8 186 53.2
BraA03t10165Z Brassica rapa HOM05D006461 ORTHO05D008199 1.9e-37 159.8 186 53.2
CDE12G0687 Ceratophyllum demersum HOM05D006461 ORTHO05D008199 1.9e-37 159.8 180 52.2
MD15G1045100 Malus domestica HOM05D006461 ORTHO05D008199 1.9e-37 159.8 184 54.9
Phvul.007G281100 Phaseolus vulgaris HOM05D006461 ORTHO05D008199 1.9e-37 159.8 174 56.9
BolC9t58798H Brassica oleracea HOM05D006461 ORTHO05D008199 2.5e-37 159.5 173 53.8
Rhsim03G0225700 Rhododendron simsii HOM05D006461 ORTHO05D008199 2.5e-37 159.5 114 77.2
DCAR_020437 Daucus carota HOM05D006461 ORTHO05D008199 3.3e-37 159.1 115 74.8
Ah.08g222190 Amaranthus hybridus HOM05D006461 ORTHO05D008199 9.6e-37 157.5 103 78.6
Dinv19309 Davidia involucrata HOM05D006461 ORTHO05D008199 9.6e-37 157.5 114 76.3
BraA10t44244Z Brassica rapa HOM05D006461 ORTHO05D008199 1.3e-36 157.1 174 55.2
Actinidia08786 Actinidia chinensis HOM05D006461 ORTHO05D008199 1.6e-36 156.8 145 63.4
BcaB08g36762 Brassica carinata HOM05D006461 ORTHO05D008199 1.6e-36 156.8 175 56.0
Hma1.2p1_0074F.1_g039100 Hydrangea macrophylla HOM05D006461 ORTHO05D008199 2.1e-36 156.4 105 78.1
Aa31LG11G12100 Aethionema arabicum HOM05D006461 ORTHO05D008199 3.6e-36 155.6 179 54.7
Sc03g0004610 Simmondsia chinensis HOM05D006461 ORTHO05D008199 1.4e-35 153.7 192 52.1
Sabra13G0064300 Salix brachista HOM05D006461 ORTHO05D008199 1.8e-35 153.3 111 74.8
Lsat_1_v5_gn_9_48000 Lactuca sativa HOM05D006461 ORTHO05D008199 3.1e-35 152.5 99 80.8
ECA232G1267 Erigeron canadensis HOM05D006461 ORTHO05D008199 9.0e-35 151.0 91 83.5
SEGI_06006 Sequoiadendron giganteum HOM05D006461 ORTHO05D008199 9.0e-35 151.0 106 72.6
Cc02_g00020 Coffea canephora HOM05D006461 ORTHO05D008199 1.2e-34 150.6 102 77.5
EL10Ac7g16271 Beta vulgaris HOM05D006461 ORTHO05D008199 2.0e-34 149.8 89 83.1
AUR62001576 Chenopodium quinoa HOM05D006461 ORTHO05D008199 2.0e-34 149.8 101 76.2
AUR62020207 Chenopodium quinoa HOM05D006461 ORTHO05D008199 2.0e-34 149.8 102 75.5
Hund20961 Selenicereus undatus HOM05D006461 ORTHO05D008199 5.8e-34 148.3 103 72.8
Mapoly0098s0024 Marchantia polymorpha HOM05D006461 ORTHO05D008199 2.2e-33 146.4 96 77.1
Cc11_g04930 Coffea canephora HOM05D006461 ORTHO05D008199 4.9e-33 145.2 102 74.5
unitig_62.g23822 Utricularia gibba HOM05D006461 ORTHO05D008199 4.9e-33 145.2 100 76.0
HanXRQChr05g0140271 Helianthus annuus HOM05D006461 ORTHO05D008199 6.4e-33 144.8 98 79.6
SalBow2G0694 Salvia bowleyana HOM05D006461 ORTHO05D008199 6.4e-33 144.8 99 75.8
SGA_v2.0_scaffold51G18860 Striga asiatica HOM05D006461 ORTHO05D008199 1.1e-32 144.1 179 54.2
Migut.F00927 Erythranthe guttata HOM05D006461 ORTHO05D008199 3.2e-32 142.5 97 75.3
GSVIVG01024255001 Vitis vinifera HOM05D006461 ORTHO05D008199 5.4e-32 141.7 81 88.9
Os06g0484600 Oryza sativa ssp. japonica HOM05D006461 ORTHO05D008199 7.1e-32 141.4 99 73.7
MSTRG.8560 Avicennia marina HOM05D006461 ORTHO05D008199 4.6e-31 138.7 105 68.6
SMO358G0572 Selaginella moellendorffii HOM05D006461 ORTHO05D008199 3.9e-30 135.6 150 54.7
Zm00001eb278180 Zea mays HOM05D006461 ORTHO05D008199 3.9e-30 135.6 99 71.7
AagrBONN_evm.TU.Sc2ySwM_117.1385 Anthoceros agrestis HOM05D006461 ORTHO05D008199 5.6e-29 131.7 98 66.3
Pp3c1_12810 Physcomitrium patens HOM05D006461 ORTHO05D008199 2.1e-28 129.8 90 74.4
HPP92_003741 Vanilla planifolia HOM05D001207 ORTHO05D007056 2.1e-28 129.8 74 86.5
Lj7P538T25 Lonicera japonica HOM05D006461 ORTHO05D008199 3.7e-28 129.0 77 83.1
Actinidia24631 Actinidia chinensis HOM05D006461 ORTHO05D008199 1.8e-27 126.7 73 86.3
Hund18806 Selenicereus undatus HOM05D006461 ORTHO05D008199 1.1e-24 117.5 85 68.2
Sed0001670 Sechium edule HOM05D006461 ORTHO05D008199 2.1e-23 113.2 119 57.1
Cre09.g394701 Chlamydomonas reinhardtii HOM05D006461 ORTHO05D008199 3.5e-23 112.5 101 60.4
PRCOL_00004611 Prasinoderma coloniale HOM05D006461 ORTHO05D008199 5.6e-21 105.1 82 59.8
CSS0025765 Camellia sinensis var. sinensis HOM05D006461 ORTHO05D008199 1.0e-17 94.4 183 38.3
CSS0040075 Camellia sinensis var. sinensis HOM05D006461 ORTHO05D008199 1.0e-17 94.4 183 38.3
SMO358G0215 Selaginella moellendorffii HOM05D006461 ORTHO05D008199 1.7e-17 93.6 79 53.2
MCO16G354 Micromonas commoda HOM05D006461 ORTHO05D008199 1.4e-16 90.5 81 59.3
Eucgr.A02995 Eucalyptus grandis HOM05D006461 ORTHO05D008199 3.2e-16 89.4 49 89.8
Lalb_Chr19g0127781 Lupinus albus HOM05D006461 ORTHO05D008199 1.6e-15 87.0 48 89.6
AT5G17560 Arabidopsis thaliana HOM05D006461 ORTHO05D008199 7.9e-15 84.7 131 45.8
Cpa.g.sc2589.1 Carica papaya HOM05D006461 ORTHO05D008199 1.3e-14 84.0 131 45.0
SHI39095 Sapria himalayana HOM05D006461 ORTHO05D008199 3.9e-14 82.4 104 50.0
Actinidia28897 Actinidia chinensis HOM05D006461 ORTHO05D008199 6.3e-12 75.1 132 42.4
AL3G12640 Arabidopsis lyrata HOM05D006461 ORTHO05D008199 1.8e-06 57.0 73 52.1
Thhalv10002241m.g Eutrema salsugineum HOM05D006461 ORTHO05D008199 3.0e-06 56.2 44 68.2
MELO3C002161.2 Cucumis melo HOM05D002854 ORTHO05D003051 3.9e-06 55.8 76 43.4
AL3G12680 Arabidopsis lyrata HOM05D000403 ORTHO05D000350 5.1e-06 55.5 50 60.0
Sc16g0010190 Simmondsia chinensis HOM05D002854 ORTHO05D003051 6.7e-06 55.1 97 35.1
CiPaw.15G085000 Carya illinoinensis HOM05D002854 ORTHO05D003051 8.8e-06 54.7 79 40.5
Oeu019053.1 Olea europaea HOM05D002854 ORTHO05D003051 8.8e-06 54.7 73 39.7


User provided reference genes

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