Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016104 Carpinus fangiana HOM05D005269 ORTHO05D006429 7.0e-72 273.9 139 100.0
Haze_00354 Corylus avellana HOM05D005269 ORTHO05D006429 1.2e-58 229.9 139 86.3
CiPaw.05G211300 Carya illinoinensis HOM05D005269 ORTHO05D006429 5.8e-42 174.5 139 68.3
ClCG01G005450 Citrullus lanatus HOM05D005269 ORTHO05D006429 1.3e-38 163.3 139 61.9
Cc11_g00500 Coffea canephora HOM05D005269 ORTHO05D006429 1.7e-38 162.9 140 59.3
MELO3C005384.2 Cucumis melo HOM05D005269 ORTHO05D006429 6.6e-38 161.0 139 60.4
TAR374G1160 Trochodendron aralioides HOM05D005269 ORTHO05D006429 6.6e-38 161.0 136 61.8
Ciclev10033086m.g Citrus clementina HOM05D005269 ORTHO05D006429 3.3e-37 158.7 142 62.0
CsaV3_5G005690 Cucumis sativus L. HOM05D005269 ORTHO05D006429 7.3e-37 157.5 139 59.7
PGR004G2648 Punica granatum HOM05D005269 ORTHO05D006429 7.3e-37 157.5 139 60.4
Eucgr.I00374 Eucalyptus grandis HOM05D005269 ORTHO05D006429 2.8e-36 155.6 139 60.4
Manes.09G130300 Manihot esculenta HOM05D005269 ORTHO05D006429 2.8e-36 155.6 141 59.6
Potri.019G042900 Populus trichocarpa HOM05D005269 ORTHO05D006429 2.8e-36 155.6 140 60.7
Potri.013G076400 Populus trichocarpa HOM05D005269 ORTHO05D006429 6.2e-36 154.5 141 60.3
Sabra19G0053500 Salix brachista HOM05D005269 ORTHO05D006429 6.2e-36 154.5 140 61.4
THA.LOC104820303 Tarenaya hassleriana HOM05D005269 ORTHO05D006429 6.2e-36 154.5 139 61.2
Dinv17239 Davidia involucrata HOM05D005269 ORTHO05D006429 3.1e-35 152.1 140 57.9
MD07G1311000 Malus domestica HOM05D005269 ORTHO05D006429 4.0e-35 151.8 134 61.2
Thecc.05G226600 Theobroma cacao HOM05D005269 ORTHO05D006429 4.0e-35 151.8 143 62.2
CARHR009820 Cardamine hirsuta HOM05D005269 ORTHO05D006429 8.9e-35 150.6 139 60.4
COL.COLO4_12968 Corchorus olitorius HOM05D005269 ORTHO05D006429 8.9e-35 150.6 143 61.5
Duzib128G1401 Durio zibethinus HOM05D005269 ORTHO05D006429 8.9e-35 150.6 143 62.2
Sed0009591 Sechium edule HOM05D005269 ORTHO05D006429 1.2e-34 150.2 139 56.8
Cpa.g.sc43.150 Carica papaya HOM05D005269 ORTHO05D006429 2.0e-34 149.4 141 56.7
CAN.G500.91 Capsicum annuum HOM05D005269 ORTHO05D006429 5.8e-34 147.9 136 55.9
Atru.chr12.1824 Acer truncatum HOM05D005269 ORTHO05D006429 2.2e-33 146.0 141 58.2
Prupe.2G330200 Prunus persica HOM05D005269 ORTHO05D006429 2.2e-33 146.0 133 58.6
TAR629G0465 Trochodendron aralioides HOM05D005269 ORTHO05D006429 2.2e-33 146.0 135 56.3
Aa31LG1G5120 Aethionema arabicum HOM05D005269 ORTHO05D006429 2.9e-33 145.6 139 59.0
Eucgr.L00611 Eucalyptus grandis HOM05D005269 ORTHO05D006429 2.9e-33 145.6 139 58.3
Peaxi162Scf00047g01229 Petunia axillaris HOM05D005269 ORTHO05D006429 2.9e-33 145.6 139 54.0
Thecc.05G226400 Theobroma cacao HOM05D005269 ORTHO05D006429 2.9e-33 145.6 142 58.5
Actinidia33802 Actinidia chinensis HOM05D005269 ORTHO05D006429 4.9e-33 144.8 135 57.8
Gorai.007G246800 Gossypium raimondii HOM05D005269 ORTHO05D006429 6.4e-33 144.4 140 59.3
Sabra13G0065600 Salix brachista HOM05D005269 ORTHO05D006429 6.4e-33 144.4 140 57.1
Sp1g08440 Schrenkiella parvula HOM05D005269 ORTHO05D006429 6.4e-33 144.4 140 60.0
Solyc09g091450.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 8.3e-33 144.1 136 54.4
AT1G09815 Arabidopsis thaliana HOM05D005269 ORTHO05D006429 1.1e-32 143.7 139 59.7
Gohir.A11G225900 Gossypium hirsutum HOM05D005269 ORTHO05D006429 1.1e-32 143.7 140 58.6
Carub.0001s0919 Capsella rubella HOM05D005269 ORTHO05D006429 1.4e-32 143.3 139 60.4
Thhalv10009118m.g Eutrema salsugineum HOM05D005269 ORTHO05D006429 1.9e-32 142.9 142 58.5
Gohir.A13G001000 Gossypium hirsutum HOM05D005269 ORTHO05D006429 1.9e-32 142.9 140 59.3
Nn1g09278 Nelumbo nucifera HOM05D005269 ORTHO05D006429 1.9e-32 142.9 135 54.8
A06p06530 Brassica napus HOM05D005269 ORTHO05D006429 2.4e-32 142.5 139 59.7
Gohir.D11G234500 Gossypium hirsutum HOM05D005269 ORTHO05D006429 2.4e-32 142.5 140 59.3
Sopen09g034380 Solanum pennellii HOM05D005269 ORTHO05D006429 2.4e-32 142.5 136 53.7
TWI32G0228 Tripterygium wilfordii HOM05D005269 ORTHO05D006429 2.4e-32 142.5 145 54.5
RcHm_v2.0_Chr2g0117101 Rosa chinensis HOM05D005269 ORTHO05D006429 3.2e-32 142.1 139 55.4
PGSC0003DMG400029616 Solanum tuberosum HOM05D005269 ORTHO05D006429 3.2e-32 142.1 136 54.4
MSTRG.4345 Avicennia marina HOM05D005269 ORTHO05D006429 4.1e-32 141.7 135 54.8
Aqoxy6G02173 Aquilegia oxysepala HOM05D005269 ORTHO05D006429 5.4e-32 141.4 98 68.4
BcaC05g24843 Brassica carinata HOM05D005269 ORTHO05D006429 5.4e-32 141.4 139 59.7
BolC5t29544H Brassica oleracea HOM05D005269 ORTHO05D006429 5.4e-32 141.4 139 59.7
BraA06t23864Z Brassica rapa HOM05D005269 ORTHO05D006429 5.4e-32 141.4 139 59.0
Thecc.05G226200 Theobroma cacao HOM05D005269 ORTHO05D006429 7.1e-32 141.0 140 57.9
Hma1.2p1_0419F.1_g149570 Hydrangea macrophylla HOM05D005269 ORTHO05D006429 4.6e-31 138.3 135 56.3
Psat7g094200 Pisum sativum HOM05D005269 ORTHO05D006429 7.8e-31 137.5 140 55.0
AL1G20410 Arabidopsis lyrata HOM05D005269 ORTHO05D006429 1.7e-30 136.3 133 59.4
Oeu034712.1 Olea europaea HOM05D005269 ORTHO05D006429 3.0e-30 135.6 140 52.9
DCAR_009029 Daucus carota HOM05D005269 ORTHO05D006429 5.1e-30 134.8 139 54.0
Psat7g094160 Pisum sativum HOM05D005269 ORTHO05D006429 5.1e-30 134.8 137 56.9
EL10Ac4g10063 Beta vulgaris HOM05D005269 ORTHO05D006429 1.1e-29 133.7 140 52.9
PSO782G4777 Papaver somniferum HOM05D005269 ORTHO05D006429 1.5e-29 133.3 136 52.9
PSO063G4725 Papaver somniferum HOM05D005269 ORTHO05D006429 1.9e-29 132.9 136 52.9
Lj7A504G56 Lonicera japonica HOM05D005269 ORTHO05D006429 4.3e-29 131.7 134 51.5
Phvul.002G201100 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 4.3e-29 131.7 140 54.3
FvH4_1g22780 Fragaria vesca HOM05D005269 ORTHO05D006429 5.6e-29 131.3 136 52.2
Glyma.05G124300 Glycine max HOM05D005269 ORTHO05D006429 5.6e-29 131.3 140 54.3
FAN26G3478 Fragaria x ananassa HOM05D005269 ORTHO05D006429 9.5e-29 130.6 136 51.5
Rhsim09G0214100 Rhododendron simsii HOM05D005269 ORTHO05D006429 1.2e-28 130.2 144 54.2
FAN23G2200 Fragaria x ananassa HOM05D005269 ORTHO05D006429 2.1e-28 129.4 132 52.3
PGSC0003DMG400019109 Solanum tuberosum HOM05D005269 ORTHO05D006429 2.1e-28 129.4 139 49.6
Sc16g0010860 Simmondsia chinensis HOM05D005269 ORTHO05D006429 4.7e-28 128.3 139 50.4
ATR0568G075 Amborella trichopoda HOM05D005269 ORTHO05D006429 8.1e-28 127.5 134 51.5
FAN19G2412 Fragaria x ananassa HOM05D005269 ORTHO05D006429 1.1e-27 127.1 136 50.7
Sed0022400 Sechium edule HOM05D005269 ORTHO05D006429 1.1e-27 127.1 140 52.1
arahy.Tifrunner.gnm1.ann1.UWAC6K Arachis hypogaea HOM05D005269 ORTHO05D006429 1.4e-27 126.7 139 54.0
Migut.H00004 Erythranthe guttata HOM05D005269 ORTHO05D006429 1.4e-27 126.7 140 49.3
Ca_18303_v3 Cicer arietinum L. HOM05D005269 ORTHO05D006429 1.8e-27 126.3 130 53.1
FAN28G1075 Fragaria x ananassa HOM05D005269 ORTHO05D006429 1.8e-27 126.3 136 50.7
MBI04_g30790_MAGBIO Magnolia biondii HOM05D005269 ORTHO05D006429 1.8e-27 126.3 135 52.6
Sopen05g032040 Solanum pennellii HOM05D005269 ORTHO05D006429 8.9e-27 124.0 137 46.7
GSVIVG01024265001 Vitis vinifera HOM05D005269 ORTHO05D006429 8.9e-27 124.0 132 51.5
arahy.Tifrunner.gnm1.ann1.FKKB7G Arachis hypogaea HOM05D005269 ORTHO05D006429 1.2e-26 123.6 140 52.9
Phvul.002G201200 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 1.2e-26 123.6 140 48.6
SGA_v2.0_scaffold18G08210 Striga asiatica HOM05D005269 ORTHO05D006429 1.2e-26 123.6 135 47.4
unitig_52.g17685 Utricularia gibba HOM05D005269 ORTHO05D006429 1.2e-26 123.6 133 49.6
Ah.04g159550 Amaranthus hybridus HOM05D005269 ORTHO05D006429 2.0e-26 122.9 139 51.8
Nitab4.5_0001769g0050 Nicotiana tabacum HOM05D005269 ORTHO05D006429 5.8e-26 121.3 133 49.6
Solyc05g053520.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 5.8e-26 121.3 140 47.1
Nitab4.5_0001066g0040 Nicotiana tabacum HOM05D005269 ORTHO05D006429 7.6e-26 120.9 138 48.6
vmacro22190 Vaccinium macrocarpon HOM05D005269 ORTHO05D006429 3.7e-25 118.6 134 50.0
CSS0034044 Camellia sinensis var. sinensis HOM05D005269 ORTHO05D006429 6.4e-25 117.9 135 49.6
AUR62000236 Chenopodium quinoa HOM05D005269 ORTHO05D006429 1.1e-24 117.1 145 49.7
Peaxi162Scf00536g00089 Petunia axillaris HOM05D005269 ORTHO05D006429 1.1e-24 117.1 133 49.6
VMungo0251G2623 Vigna mungo HOM05D005269 ORTHO05D006429 1.1e-24 117.1 139 48.2
Gorai.013G185000 Gossypium raimondii HOM05D005269 ORTHO05D006429 2.4e-24 115.9 142 48.6
AUR62006583 Chenopodium quinoa HOM05D005269 ORTHO05D006429 3.2e-24 115.5 145 49.0
Hund07408 Selenicereus undatus HOM05D005269 ORTHO05D006429 5.4e-24 114.8 140 46.4
ECA232G2798 Erigeron canadensis HOM05D005251 ORTHO05D006680 2.7e-23 112.5 134 48.5
CANSAT78G2182 Cannabis sativa HOM05D005269 ORTHO05D006429 6.0e-23 111.3 132 49.2
HanXRQChr17g0540921 Helianthus annuus HOM05D005269 ORTHO05D006429 1.7e-22 109.8 139 47.5
CAN.G17.24 Capsicum annuum HOM05D005269 ORTHO05D006429 2.3e-22 109.4 137 44.5
Zm00001eb318480 Zea mays HOM05D005269 ORTHO05D006429 3.0e-22 109.0 145 41.4
Gohir.D13G162800 Gossypium hirsutum HOM05D005269 ORTHO05D006429 3.9e-22 108.6 140 46.4
Lsat_1_v5_gn_9_46181 Lactuca sativa HOM05D005269 ORTHO05D006429 1.1e-21 107.1 141 46.1
Mapoly0002s0066 Marchantia polymorpha HOM05D005269 ORTHO05D006429 1.5e-21 106.7 140 42.9
CDE02G3654 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 1.9e-21 106.3 139 41.7
Ah.06g194960 Amaranthus hybridus HOM05D005269 ORTHO05D006429 2.5e-21 105.9 141 46.1
Glyma.08G079500 Glycine max HOM05D005269 ORTHO05D006429 2.5e-21 105.9 128 46.9
Medtr4g094465 Medicago truncatula HOM05D005269 ORTHO05D006429 5.6e-21 104.8 138 44.9
Lj4g0020860 Lotus japonicus HOM05D005269 ORTHO05D006429 1.6e-20 103.2 133 48.1
CDE11G1263 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 2.1e-20 102.8 139 43.2
C05p07920 Brassica napus HOM05D005269 ORTHO05D006429 4.7e-20 101.7 65 69.2
Gohir.A13G157700 Gossypium hirsutum HOM05D005269 ORTHO05D006429 3.1e-19 99.0 136 44.9
Lalb_Chr07g0189121 Lupinus albus HOM05D005269 ORTHO05D006429 5.2e-19 98.2 139 43.9
SEGI_20967 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 2.2e-17 92.8 144 41.0
HPP92_001933 Vanilla planifolia HOM05D005269 ORTHO05D006429 1.1e-16 90.5 138 39.9
Os09g0520100 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 7.1e-16 87.8 144 38.9
TPR.G23807 Trifolium pratense HOM05D005269 ORTHO05D006429 9.3e-16 87.4 136 37.5
Phvul.006G123900 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 2.7e-15 85.9 64 57.8
Glyma.15G135000 Glycine max HOM05D005269 ORTHO05D006429 4.6e-15 85.1 127 40.9
Pp3c4_21450 Physcomitrium patens HOM05D005269 ORTHO05D006429 1.3e-14 83.6 130 41.5
Medtr1g105865 Medicago truncatula HOM05D005269 ORTHO05D006429 4.3e-13 78.6 63 58.7
PRCOL_00003345 Prasinoderma coloniale HOM05D005269 ORTHO05D006429 9.6e-13 77.4 64 53.1
AUR62032913 Chenopodium quinoa HOM05D005269 ORTHO05D006429 1.3e-12 77.0 55 61.8
AagrBONN_evm.TU.Sc2ySwM_344.2125 Anthoceros agrestis HOM05D005269 ORTHO05D006429 6.2e-12 74.7 117 36.8
Medtr4g094458 Medicago truncatula HOM05D005269 ORTHO05D006429 8.1e-12 74.3 66 53.0
Actinidia04559 Actinidia chinensis HOM05D005269 ORTHO05D006429 1.8e-11 73.2 102 48.0
TPR.G31897 Trifolium pratense HOM05D005269 ORTHO05D006429 2.4e-11 72.8 132 35.6
Os08g0163300 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 5.3e-11 71.6 154 34.4
SEGI_01057 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 9.0e-11 70.9 88 39.8
SEGI_08095 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 1.5e-10 70.1 140 32.9
SMO134G0019 Selaginella moellendorffii HOM05D001491 ORTHO05D001443 2.0e-10 69.7 65 44.6
Zm00001eb415390 Zea mays HOM05D005269 ORTHO05D006429 4.4e-10 68.6 62 53.2
Mapoly0080s0095 Marchantia polymorpha HOM05D005269 ORTHO05D006429 1.7e-09 66.6 62 43.5
CDE02G2358 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 4.2e-08 62.0 53 56.6
MCO11G533 Micromonas commoda HOM05D005269 ORTHO05D006429 1.2e-07 60.5 74 41.9
Phvul.006G123800 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 1.2e-07 60.5 101 38.6
Cre06.g292950 Chlamydomonas reinhardtii HOM05D005269 ORTHO05D006429 2.1e-07 59.7 134 31.3
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 2.7e-07 59.3 49 55.1


User provided reference genes

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