Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016079 Carpinus fangiana HOM05D004688 ORTHO05D005490 1.0e-193 679.9 343 100.0
Haze_00366 Corylus avellana HOM05D004688 ORTHO05D005490 2.2e-188 662.1 343 97.4
CiPaw.05G212300 Carya illinoinensis HOM05D004688 ORTHO05D005490 5.0e-172 607.8 343 89.5
QL09p020531 Quercus lobata HOM05D004688 ORTHO05D005490 2.1e-170 602.4 349 86.0
CiPaw.06G036300 Carya illinoinensis HOM05D004688 ORTHO05D005490 1.6e-157 559.7 343 83.1
FAN01G2619 Fragaria x ananassa HOM05D004688 ORTHO05D005490 6.0e-157 557.8 345 82.0
FvH4_7g34310 Fragaria vesca HOM05D004688 ORTHO05D005490 5.1e-156 554.7 345 81.7
FAN03G0573 Fragaria x ananassa HOM05D004688 ORTHO05D005490 6.6e-156 554.3 345 81.7
Atru.chr12.1856 Acer truncatum HOM05D004688 ORTHO05D005490 6.8e-153 544.3 347 78.7
Thecc.05G223200 Theobroma cacao HOM05D004688 ORTHO05D005490 3.4e-152 542.0 342 81.3
RcHm_v2.0_Chr1g0384701 Rosa chinensis HOM05D004688 ORTHO05D005490 4.4e-152 541.6 346 80.1
COL.COLO4_15125 Corchorus olitorius HOM05D004688 ORTHO05D005490 1.4e-150 536.6 343 80.8
Prupe.2G329400 Prunus persica HOM05D004688 ORTHO05D005490 2.4e-150 535.8 345 79.1
Manes.08G160300 Manihot esculenta HOM05D004688 ORTHO05D005490 1.6e-149 533.1 343 77.8
Gohir.A13G158100 Gossypium hirsutum HOM05D004688 ORTHO05D005490 1.7e-148 529.6 336 81.0
Duzib128G0049 Durio zibethinus HOM05D004688 ORTHO05D005490 5.1e-148 528.1 355 78.0
Potri.019G042700 Populus trichocarpa HOM05D004688 ORTHO05D005490 8.6e-148 527.3 343 78.1
Gohir.D13G162400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 3.3e-147 525.4 343 78.7
Gorai.013G184500 Gossypium raimondii HOM05D004688 ORTHO05D005490 2.8e-146 522.3 347 77.8
RhsimUnG0132900 Rhododendron simsii HOM05D004688 ORTHO05D005490 2.8e-146 522.3 343 77.6
Dinv24334 Davidia involucrata HOM05D004688 ORTHO05D005490 1.1e-145 520.4 346 77.5
Ciclev10032005m.g Citrus clementina HOM05D004688 ORTHO05D005490 1.4e-145 520.0 344 75.0
vmacro12865 Vaccinium macrocarpon HOM05D004688 ORTHO05D005490 2.0e-144 516.2 347 75.5
Manes.09G130000 Manihot esculenta HOM05D004688 ORTHO05D005490 2.6e-144 515.8 343 76.4
GSVIVG01024321001 Vitis vinifera HOM05D004688 ORTHO05D005490 1.3e-143 513.5 344 75.6
Hma1.2p1_0528F.1_g173050 Hydrangea macrophylla HOM05D004688 ORTHO05D005490 1.9e-142 509.6 343 75.8
Potri.013G076900 Populus trichocarpa HOM05D004688 ORTHO05D005490 3.2e-142 508.8 343 76.7
Actinidia20087 Actinidia chinensis HOM05D004688 ORTHO05D005490 5.4e-142 508.1 343 75.2
Duzib177G0832 Durio zibethinus HOM05D004688 ORTHO05D005490 2.3e-140 502.7 350 74.9
Gorai.003G058400 Gossypium raimondii HOM05D004688 ORTHO05D005490 6.6e-140 501.1 343 77.0
TAR636G2823 Trochodendron aralioides HOM05D004688 ORTHO05D005490 6.6e-140 501.1 344 74.4
Gohir.D03G055600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 5.6e-139 498.0 343 76.7
TAR629G2324 Trochodendron aralioides HOM05D004688 ORTHO05D005490 5.6e-139 498.0 344 74.1
ClCG09G013160 Citrullus lanatus HOM05D004688 ORTHO05D005490 2.8e-138 495.7 345 74.2
CsaV3_6G036850 Cucumis sativus L. HOM05D004688 ORTHO05D005490 5.3e-137 491.5 344 72.7
MD07G1032800 Malus domestica HOM05D004688 ORTHO05D005490 6.9e-137 491.1 345 73.6
Sed0002645 Sechium edule HOM05D004688 ORTHO05D005490 1.2e-136 490.3 344 73.5
Gohir.A02G114600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 9.9e-136 487.3 343 75.2
MELO3C014341.2 Cucumis melo HOM05D004688 ORTHO05D005490 1.7e-135 486.5 344 72.1
Sed0013330 Sechium edule HOM05D004688 ORTHO05D005490 3.2e-134 482.3 344 73.5
arahy.Tifrunner.gnm1.ann1.8TRX11 Arachis hypogaea HOM05D004688 ORTHO05D005490 2.7e-133 479.2 344 71.8
arahy.Tifrunner.gnm1.ann1.N6YK28 Arachis hypogaea HOM05D004688 ORTHO05D005490 7.8e-133 477.6 344 71.8
Sabra13G0065900 Salix brachista HOM05D004688 ORTHO05D005490 1.7e-132 476.5 408 63.7
MD01G1239500 Malus domestica HOM05D004688 ORTHO05D005490 5.1e-132 474.9 345 71.6
FAN10G2489 Fragaria x ananassa HOM05D004688 ORTHO05D005490 6.6e-132 474.6 388 66.8
TWI18G0476 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 8.7e-132 474.2 345 72.8
Gohir.A08G221644 Gossypium hirsutum HOM05D004688 ORTHO05D005490 2.5e-131 472.6 343 72.9
Eucgr.E02431 Eucalyptus grandis HOM05D004688 ORTHO05D005490 7.3e-131 471.1 343 70.8
Sabra19G0053300 Salix brachista HOM05D004688 ORTHO05D005490 1.3e-130 470.3 413 62.2
CANSAT21G2449 Cannabis sativa HOM05D004688 ORTHO05D005490 2.8e-130 469.2 351 70.4
Lj3g0005411 Lotus japonicus HOM05D004688 ORTHO05D005490 3.6e-130 468.8 343 71.1
Gohir.D08G240400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 1.1e-129 467.2 343 72.3
TWI12G0369 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 1.4e-129 466.8 343 72.3
Gorai.004G255700 Gossypium raimondii HOM05D004688 ORTHO05D005490 2.4e-129 466.1 343 72.3
Oeu037809.1 Olea europaea HOM05D004688 ORTHO05D005490 5.3e-129 464.9 343 70.0
Oeu047689.1 Olea europaea HOM05D004688 ORTHO05D005490 6.9e-129 464.5 343 70.3
Ca_19600_v3 Cicer arietinum L. HOM05D004688 ORTHO05D005490 9.0e-129 464.2 343 71.7
Glyma.12G014100 Glycine max HOM05D004688 ORTHO05D005490 1.7e-127 459.9 346 70.8
Aqoxy1G03166 Aquilegia oxysepala HOM05D004688 ORTHO05D005490 2.2e-127 459.5 344 69.5
Glyma.09G222900 Glycine max HOM05D004688 ORTHO05D005490 8.4e-127 457.6 347 70.6
Cc04_g10300 Coffea canephora HOM05D004688 ORTHO05D005490 1.1e-126 457.2 343 69.1
PSO063G1904 Papaver somniferum HOM05D004688 ORTHO05D005490 3.2e-126 455.7 345 68.7
TPR.G9830 Trifolium pratense HOM05D004688 ORTHO05D005490 7.1e-126 454.5 347 68.6
SalBow1G7515 Salvia bowleyana HOM05D004688 ORTHO05D005490 2.7e-125 452.6 343 69.7
VMungo1127G1418 Vigna mungo HOM05D004688 ORTHO05D005490 3.5e-125 452.2 348 69.0
PSO782G0681 Papaver somniferum HOM05D004688 ORTHO05D005490 1.0e-124 450.7 345 67.8
DCAR_030965 Daucus carota HOM05D004688 ORTHO05D005490 5.1e-124 448.4 342 69.0
THA.LOC104805719 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 3.3e-123 445.7 345 71.3
PGSC0003DMG400028677 Solanum tuberosum HOM05D004688 ORTHO05D005490 5.3e-121 438.3 343 66.2
Lj2A605T63 Lonicera japonica HOM05D004688 ORTHO05D005490 1.2e-120 437.2 397 61.5
Dinv03730 Davidia involucrata HOM05D004688 ORTHO05D005490 3.4e-120 435.6 343 67.9
THA.LOC104823796 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 4.5e-120 435.3 349 68.8
CSS0020442 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 7.6e-120 434.5 357 68.3
Lalb_Chr01g0000741 Lupinus albus HOM05D004688 ORTHO05D005490 9.9e-120 434.1 348 66.1
Solyc11g005810.2 Solanum lycopersicum HOM05D004688 ORTHO05D005490 2.2e-119 433.0 344 65.7
Migut.E01543 Erythranthe guttata HOM05D004688 ORTHO05D005490 3.8e-119 432.2 345 67.0
Lalb_Chr19g0140091 Lupinus albus HOM05D004688 ORTHO05D005490 3.8e-119 432.2 332 67.5
Sopen11g001770 Solanum pennellii HOM05D004688 ORTHO05D005490 6.4e-119 431.4 344 65.4
Oeu044132.1 Olea europaea HOM05D004688 ORTHO05D005490 2.5e-118 429.5 343 65.0
Aa31LG5G12060 Aethionema arabicum HOM05D004688 ORTHO05D003121 3.2e-118 429.1 343 66.5
Peaxi162Scf00012g01425 Petunia axillaris HOM05D004688 ORTHO05D005490 5.5e-118 428.3 344 65.7
Nn1g09153 Nelumbo nucifera HOM05D004688 ORTHO05D005490 9.3e-118 427.6 350 65.7
Psat0s643g0040 Pisum sativum HOM05D004688 ORTHO05D005490 2.7e-117 426.0 346 67.3
MSTRG.1666 Avicennia marina HOM05D004688 ORTHO05D005490 3.5e-117 425.6 343 65.9
Nn3g21937 Nelumbo nucifera HOM05D004688 ORTHO05D005490 1.0e-116 424.1 347 65.1
Carub.0007s1324 Capsella rubella HOM05D004688 ORTHO05D005490 1.3e-116 423.7 346 66.2
ECA236G0885 Erigeron canadensis HOM05D004688 ORTHO05D005490 8.7e-116 421.0 343 65.0
Thhalv10025651m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 8.7e-116 421.0 344 65.7
Sp7g25560 Schrenkiella parvula HOM05D004688 ORTHO05D005490 1.9e-115 419.9 345 65.2
Medtr0004s0230 Medicago truncatula HOM05D004688 ORTHO05D005490 7.4e-115 417.9 329 68.7
MSTRG.14034 Avicennia marina HOM05D004688 ORTHO05D005490 3.7e-114 415.6 344 65.7
Nn4g25357 Nelumbo nucifera HOM05D004688 ORTHO05D005490 8.2e-114 414.5 345 63.8
MBI04_g30768_MAGBIO Magnolia biondii HOM05D004688 ORTHO05D005490 2.4e-113 412.9 341 63.3
Lalb_Chr03g0024311 Lupinus albus HOM05D004688 ORTHO05D005490 3.1e-113 412.5 321 69.2
Duzib106G1350 Durio zibethinus HOM05D004688 ORTHO05D005490 9.0e-113 411.0 282 73.8
AL7G25110 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 1.7e-111 406.8 349 63.3
SGA_v2.0_scaffold163G38052 Striga asiatica HOM05D004688 ORTHO05D005490 2.2e-111 406.4 346 64.5
CARHR235310 Cardamine hirsuta HOM05D004688 ORTHO05D005490 4.9e-111 405.2 349 64.5
Thhalv10025690m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 1.1e-110 404.1 344 64.0
HanXRQChr04g0116531 Helianthus annuus HOM05D004688 ORTHO05D005490 1.1e-110 404.1 343 63.3
THA.LOC104821693 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 2.5e-110 402.9 346 66.2
AT4G27620 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 7.1e-110 401.4 345 64.3
Sp7g25570 Schrenkiella parvula HOM05D004688 ORTHO05D005490 6.0e-109 398.3 344 62.8
BcaNung01654 Brassica carinata HOM05D004688 ORTHO05D005490 3.0e-108 396.0 347 62.0
AT4G27610 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 3.9e-108 395.6 346 64.2
Carub.0007s1323 Capsella rubella HOM05D004688 ORTHO05D005490 6.7e-108 394.8 345 63.2
AUR62002842 Chenopodium quinoa HOM05D004688 ORTHO05D005490 1.5e-107 393.7 352 59.4
CARHR235320 Cardamine hirsuta HOM05D004688 ORTHO05D005490 5.7e-107 391.7 345 62.6
Sc07g0001340 Simmondsia chinensis HOM05D004688 ORTHO05D005490 7.4e-107 391.3 343 61.8
EL10Ac6g14347 Beta vulgaris HOM05D004688 ORTHO05D005490 1.3e-106 390.6 344 63.1
Phvul.011G017000 Phaseolus vulgaris HOM05D004688 ORTHO05D005490 1.6e-106 390.2 277 73.3
PGR142G2085 Punica granatum HOM05D004688 ORTHO05D005490 5.3e-105 385.2 346 63.9
A01p18910 Brassica napus HOM05D004688 ORTHO05D005490 2.0e-104 383.3 344 63.1
BraA01t01832Z Brassica rapa HOM05D004688 ORTHO05D005490 2.6e-104 382.9 344 63.1
CDE02G1754 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 3.8e-103 379.0 347 57.6
CDE11G1120 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 6.5e-103 378.3 349 56.7
AUR62037307 Chenopodium quinoa HOM05D004688 ORTHO05D005490 8.5e-103 377.9 343 59.5
Nitab4.5_0000877g0060 Nicotiana tabacum HOM05D004688 ORTHO05D005490 8.5e-103 377.9 357 59.4
BcaC09g50567 Brassica carinata HOM05D004688 ORTHO05D005490 1.9e-102 376.7 344 61.0
BolC1t02331H Brassica oleracea HOM05D004688 ORTHO05D005490 1.9e-102 376.7 344 61.0
BolC7t46040H Brassica oleracea HOM05D004688 ORTHO05D005490 1.6e-101 373.6 343 61.2
C01p23860 Brassica napus HOM05D004688 ORTHO05D005490 1.0e-100 370.9 344 60.5
BraA01t01828Z Brassica rapa HOM05D004688 ORTHO05D005490 1.8e-100 370.2 346 59.5
BcaC06g32678 Brassica carinata HOM05D004688 ORTHO05D005490 2.3e-100 369.8 348 60.3
HanXRQChr15g0482031 Helianthus annuus HOM05D004688 ORTHO05D005490 2.3e-100 369.8 347 58.5
A01p18850 Brassica napus HOM05D004688 ORTHO05D005490 1.1e-99 367.5 347 59.1
BcaNung01652 Brassica carinata HOM05D004688 ORTHO05D005490 1.5e-99 367.1 344 60.2
C07p55600 Brassica napus HOM05D004688 ORTHO05D005490 1.5e-99 367.1 341 61.0
BcaC09g50575 Brassica carinata HOM05D004688 ORTHO05D005490 2.5e-99 366.3 347 59.4
A03p57380 Brassica napus HOM05D004688 ORTHO05D005490 7.4e-99 364.8 342 59.9
C01p23780 Brassica napus HOM05D004688 ORTHO05D005490 7.4e-99 364.8 345 60.0
BraA03t14804Z Brassica rapa HOM05D004688 ORTHO05D005490 7.4e-99 364.8 342 59.9
BolC1t02329H Brassica oleracea HOM05D004688 ORTHO05D005490 9.7e-99 364.4 347 58.8
Ah.03g138260 Amaranthus hybridus HOM05D004688 ORTHO05D005490 2.2e-98 363.2 343 57.4
CSS0035319 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 1.5e-96 357.1 261 72.4
Actinidia06638 Actinidia chinensis HOM05D004688 ORTHO05D005490 1.3e-95 354.0 248 72.6
Ah.02g127670 Amaranthus hybridus HOM05D004688 ORTHO05D005490 5.0e-95 352.1 343 58.0
Os02g0582200 Oryza sativa ssp. japonica HOM05D004688 ORTHO05D005490 2.7e-93 346.3 352 56.5
Zm00001eb183340 Zea mays HOM05D004688 ORTHO05D005490 3.7e-90 335.9 350 53.1
Zm00001eb245400 Zea mays HOM05D004688 ORTHO05D005490 5.3e-89 332.0 351 53.6
Lsat_1_v5_gn_7_27441 Lactuca sativa HOM05D005861 ORTHO05D007151 1.9e-86 323.6 282 63.1
Migut.A00176 Erythranthe guttata HOM05D004688 ORTHO05D005490 1.7e-74 283.9 343 53.6
AL7G25100 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 5.3e-73 278.9 208 71.2
unitig_578.g16583 Utricularia gibba HOM05D004688 ORTHO05D005490 1.2e-72 277.7 254 58.3
ATR0829G074 Amborella trichopoda HOM05D004688 ORTHO05D005490 6.5e-71 271.9 341 49.3
Nitab4.5_0000805g0040 Nicotiana tabacum HOM05D004688 ORTHO05D005490 1.7e-63 247.3 348 43.7
BcaC06g32679 Brassica carinata HOM05D006163 ORTHO05D007625 1.0e-55 221.5 346 43.4
SEGI_37617 Sequoiadendron giganteum HOM05D004688 ORTHO05D005490 4.6e-40 169.5 382 35.3
HPP92_022761 Vanilla planifolia HOM05D004688 ORTHO05D005490 1.4e-36 157.9 251 41.8
unitig_8.g5064 Utricularia gibba HOM05D004688 ORTHO05D005490 3.3e-30 136.7 154 53.9
HPP92_004940 Vanilla planifolia HOM05D004688 ORTHO05D005490 2.9e-26 123.6 156 48.7
Oeu004249.1 Olea europaea HOM05D004688 ORTHO05D005490 1.7e-23 114.4 232 36.2
HPP92_004939 Vanilla planifolia HOM05D004688 ORTHO05D005490 4.4e-19 99.8 162 40.1
SGA_v2.0_scaffold249G44960 Striga asiatica HOM05D004688 ORTHO05D005490 2.9e-18 97.1 91 57.1
unitig_8.g5063 Utricularia gibba HOM05D004688 ORTHO05D005490 2.4e-17 94.0 149 41.6
Mapoly0010s0074 Marchantia polymorpha HOM05D017133 ORTHO05D005490 6.9e-12 75.9 356 25.6
SMO367G0918 Selaginella moellendorffii HOM05D004688 ORTHO05D005490 9.9e-11 72.0 186 30.6
Peaxi162Scf00120g01119 Petunia axillaris HOM05D002883 ORTHO05D003116 3.8e-10 70.1 181 31.5
AagrBONN_evm.TU.Sc2ySwM_117.2972 Anthoceros agrestis HOM05D034434 ORTHO05D019609 4.6e-08 63.2 262 24.0
Pp3c18_2430 Physcomitrium patens HOM05D017133 ORTHO05D019609 4.6e-08 63.2 278 24.8
AagrBONN_evm.TU.Sc2ySwM_228.4062 Anthoceros agrestis HOM05D034434 ORTHO05D002774 1.3e-07 61.6 70 34.3
Pp3c24_15840 Physcomitrium patens HOM05D017133 ORTHO05D005490 1.8e-07 61.2 347 24.8
Pp3c7_3600 Physcomitrium patens HOM05D017133 ORTHO05D019609 6.7e-07 59.3 234 24.8
Pp3c21_20300 Physcomitrium patens HOM05D017133 ORTHO05D019609 1.9e-06 57.8 238 25.2


User provided reference genes

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