Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016075 Carpinus fangiana HOM05D005039 ORTHO05D006145 2.8e-258 894.8 468 100.0
QL09p020758 Quercus lobata HOM05D005039 ORTHO05D006145 2.0e-243 845.5 467 94.6
Nn3g19238 Nelumbo nucifera HOM05D005039 ORTHO05D006145 1.7e-242 842.4 469 92.8
Dinv29126 Davidia involucrata HOM05D005039 ORTHO05D006145 8.2e-242 840.1 469 92.8
MD07G1310900 Malus domestica HOM05D005039 ORTHO05D006145 7.0e-241 837.0 469 93.2
CANSAT21G2526 Cannabis sativa HOM05D005039 ORTHO05D006145 4.5e-240 834.3 469 92.3
Manes.08G160900 Manihot esculenta HOM05D005039 ORTHO05D006145 1.7e-239 832.4 469 92.8
RcHm_v2.0_Chr1g0384591 Rosa chinensis HOM05D005039 ORTHO05D006145 5.0e-239 830.9 469 92.3
MELO3C021899.2 Cucumis melo HOM05D005039 ORTHO05D006145 6.5e-239 830.5 469 91.5
TAR629G1612 Trochodendron aralioides HOM05D005039 ORTHO05D006145 1.1e-238 829.7 469 91.5
TWI79G0887 Tripterygium wilfordii HOM05D005039 ORTHO05D006145 1.9e-238 828.9 469 91.7
Sed0001134 Sechium edule HOM05D005039 ORTHO05D006145 4.2e-238 827.8 469 91.0
Thecc.05G222600 Theobroma cacao HOM05D005039 ORTHO05D006145 4.2e-238 827.8 469 90.8
CsaV3_2G014060 Cucumis sativus L. HOM05D005039 ORTHO05D006145 9.4e-238 826.6 469 91.7
GSVIVG01024328001 Vitis vinifera HOM05D005039 ORTHO05D006145 3.6e-237 824.7 469 91.3
FvH4_7g34230 Fragaria vesca HOM05D005039 ORTHO05D006145 1.0e-236 823.2 469 91.0
FAN10G2688 Fragaria x ananassa HOM05D005039 ORTHO05D006145 1.0e-236 823.2 469 91.0
Aqoxy1G03063 Aquilegia oxysepala HOM05D005039 ORTHO05D006145 1.8e-236 822.4 468 90.6
CSS0008859 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 1.8e-236 822.4 469 92.5
Atru.chr12.1876 Acer truncatum HOM05D005039 ORTHO05D006145 3.0e-236 821.6 469 90.4
SGA_v2.0_scaffold188G40301 Striga asiatica HOM05D005039 ORTHO05D006145 5.2e-236 820.8 469 90.8
Duzib106G2059 Durio zibethinus HOM05D005039 ORTHO05D006145 1.1e-235 819.7 469 90.2
FAN01G1789 Fragaria x ananassa HOM05D005039 ORTHO05D006145 2.6e-235 818.5 469 90.4
Nn1g02122 Nelumbo nucifera HOM05D005039 ORTHO05D006145 1.3e-234 816.2 469 90.4
Sopen07g023860 Solanum pennellii HOM05D005039 ORTHO05D006145 2.2e-234 815.5 470 90.2
HanXRQChr16g0512151 Helianthus annuus HOM05D005039 ORTHO05D006145 2.8e-234 815.1 469 90.2
FAN03G0337 Fragaria x ananassa HOM05D005039 ORTHO05D006145 3.7e-234 814.7 471 90.7
Gohir.A02G125900 Gossypium hirsutum HOM05D005039 ORTHO05D006145 3.7e-234 814.7 469 89.6
Gohir.D03G054700 Gossypium hirsutum HOM05D005039 ORTHO05D006145 3.7e-234 814.7 469 89.6
MBI04_g12218_MAGBIO Magnolia biondii HOM05D005039 ORTHO05D006145 6.3e-234 813.9 470 89.6
Solyc07g045330.3 Solanum lycopersicum HOM05D005039 ORTHO05D006145 6.3e-234 813.9 470 90.0
Ciclev10031435m.g Citrus clementina HOM05D005039 ORTHO05D006145 8.2e-234 813.5 469 91.0
Gorai.003G057600 Gossypium raimondii HOM05D005039 ORTHO05D006145 8.2e-234 813.5 469 89.3
Potri.013G077700 Populus trichocarpa HOM05D005039 ORTHO05D006145 3.1e-233 811.6 470 89.4
SalBow7G2894 Salvia bowleyana HOM05D005039 ORTHO05D006145 7.0e-233 810.4 469 88.9
MSTRG.24939 Avicennia marina HOM05D005039 ORTHO05D006145 9.1e-233 810.1 469 89.1
vmacro06372 Vaccinium macrocarpon HOM05D005039 ORTHO05D006145 1.6e-232 809.3 506 84.8
CAN.G437.12 Capsicum annuum HOM05D005039 ORTHO05D006145 3.5e-232 808.1 470 89.6
Lsat_1_v5_gn_9_47921 Lactuca sativa HOM05D005039 ORTHO05D006145 1.3e-231 806.2 469 89.8
Migut.C00159 Erythranthe guttata HOM05D005039 ORTHO05D006145 2.9e-231 805.1 469 89.3
ATR0829G179 Amborella trichopoda HOM05D005039 ORTHO05D006145 1.5e-230 802.7 469 88.3
Lj3g0003232 Lotus japonicus HOM05D005039 ORTHO05D006145 1.6e-229 799.3 468 89.5
Glyma.12G014800 Glycine max HOM05D005039 ORTHO05D006145 3.6e-229 798.1 469 89.1
Glyma.11G109900 Glycine max HOM05D005039 ORTHO05D006145 4.7e-229 797.7 469 88.9
Sabra13G0066500 Salix brachista HOM05D005039 ORTHO05D006145 6.1e-229 797.3 506 83.4
Ah.13g072370 Amaranthus hybridus HOM05D005039 ORTHO05D006145 8.0e-229 797.0 469 90.2
Hund09811 Selenicereus undatus HOM05D005039 ORTHO05D006145 1.0e-228 796.6 493 86.0
PSO782G0889 Papaver somniferum HOM05D005039 ORTHO05D006145 1.4e-228 796.2 470 88.1
THA.LOC104805716 Tarenaya hassleriana HOM05D005039 ORTHO05D006145 5.2e-228 794.3 469 88.1
PSO063G4466 Papaver somniferum HOM05D005039 ORTHO05D006145 2.6e-227 792.0 470 87.7
Lalb_Chr09g0320081 Lupinus albus HOM05D005039 ORTHO05D006145 3.3e-227 791.6 468 87.2
Phvul.011G017800 Phaseolus vulgaris HOM05D005039 ORTHO05D006145 3.3e-227 791.6 469 88.5
ECA232G0266 Erigeron canadensis HOM05D005039 ORTHO05D006145 7.5e-227 790.4 463 88.8
Ca_26497_v3 Cicer arietinum L. HOM05D005039 ORTHO05D006145 1.1e-225 786.6 469 88.1
Medtr5g005440 Medicago truncatula HOM05D005039 ORTHO05D006145 2.0e-224 782.3 468 87.8
Carub.0007s1322 Capsella rubella HOM05D005039 ORTHO05D006145 3.5e-224 781.6 469 87.0
Sp7g25580 Schrenkiella parvula HOM05D005039 ORTHO05D006145 1.0e-223 780.0 469 86.4
EL10Ac3g05043 Beta vulgaris HOM05D005039 ORTHO05D006145 1.3e-223 779.6 545 78.2
Aa31LG2G2190 Aethionema arabicum HOM05D005039 ORTHO05D006145 2.2e-223 778.9 469 85.9
AL2G19600 Arabidopsis lyrata HOM05D005039 ORTHO05D006145 1.1e-222 776.5 469 85.7
Thhalv10025115m.g Eutrema salsugineum HOM05D005039 ORTHO05D006145 1.1e-222 776.5 469 85.7
C01p23870 Brassica napus HOM05D005039 ORTHO05D006145 5.5e-222 774.2 469 85.5
CARHR235330 Cardamine hirsuta HOM05D005039 ORTHO05D006145 5.5e-222 774.2 469 85.5
Carub.0002s1015 Capsella rubella HOM05D005039 ORTHO05D006145 7.2e-222 773.9 469 85.7
BcaC09g50566 Brassica carinata HOM05D005039 ORTHO05D006145 1.2e-221 773.1 469 85.5
BolC1t02332H Brassica oleracea HOM05D005039 ORTHO05D006145 1.2e-221 773.1 469 85.5
Eucgr.K00067 Eucalyptus grandis HOM05D005039 ORTHO05D006145 1.2e-221 773.1 442 91.4
BcaNung01651 Brassica carinata HOM05D005039 ORTHO05D006145 1.6e-221 772.7 469 85.5
A01p18920 Brassica napus HOM05D005039 ORTHO05D006145 1.6e-221 772.7 469 85.3
AT1G64990 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 2.7e-221 771.9 469 85.5
AT4G27630 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 3.6e-221 771.5 469 85.7
Duzib128G1855 Durio zibethinus HOM05D005039 ORTHO05D006145 1.0e-220 770.0 469 85.5
Peaxi162Scf00802g00029 Petunia axillaris HOM05D005039 ORTHO05D006145 4.0e-220 768.1 470 86.6
Sp5g19320 Schrenkiella parvula HOM05D005039 ORTHO05D006145 1.5e-219 766.1 469 84.9
AUR62002093 Chenopodium quinoa HOM05D005039 ORTHO05D006145 2.0e-219 765.8 469 85.9
CARHR056390 Cardamine hirsuta HOM05D005039 ORTHO05D006145 3.4e-219 765.0 469 85.1
C02p21070 Brassica napus HOM05D005039 ORTHO05D006145 1.7e-218 762.7 470 85.1
BraA02t06350Z Brassica rapa HOM05D005039 ORTHO05D006145 1.7e-218 762.7 470 85.1
Zm00001eb430290 Zea mays HOM05D005039 ORTHO05D006145 4.1e-217 758.1 469 83.8
A02p12960 Brassica napus HOM05D005039 ORTHO05D006145 9.1e-217 756.9 471 84.7
Nitab4.5_0006992g0040 Nicotiana tabacum HOM05D005039 ORTHO05D006145 1.2e-216 756.5 491 82.9
BraA01t01833Z Brassica rapa HOM05D005039 ORTHO05D006145 3.5e-216 755.0 497 80.3
Os04g0600800 Oryza sativa ssp. japonica HOM05D005039 ORTHO05D006145 4.5e-216 754.6 469 83.8
BolC2t08248H Brassica oleracea HOM05D005039 ORTHO05D006145 7.7e-216 753.8 493 81.1
Nitab4.5_0009864g0010 Nicotiana tabacum HOM05D005039 ORTHO05D006145 1.3e-215 753.1 470 85.5
PGR142G1194 Punica granatum HOM05D005039 ORTHO05D006145 1.5e-214 749.6 441 88.0
Oeu027894.4 Olea europaea HOM05D005039 ORTHO05D006145 4.1e-209 731.5 492 79.3
Sc13g0011000 Simmondsia chinensis HOM05D005039 ORTHO05D006145 1.3e-207 726.5 418 90.9
ClCG09G017310 Citrullus lanatus HOM05D005039 ORTHO05D006145 1.1e-201 706.8 397 92.7
Actinidia08765 Actinidia chinensis HOM05D005039 ORTHO05D006145 3.5e-200 701.8 417 89.0
Rhsim03G0224300 Rhododendron simsii HOM05D005039 ORTHO05D006145 1.0e-199 700.3 470 81.1
arahy.Tifrunner.gnm1.ann1.GG16T8 Arachis hypogaea HOM05D005039 ORTHO05D006145 9.5e-198 693.7 418 87.1
arahy.Tifrunner.gnm1.ann1.IZT0PT Arachis hypogaea HOM05D005039 ORTHO05D006145 9.5e-198 693.7 418 87.1
AUR62028211 Chenopodium quinoa HOM05D005039 ORTHO05D006145 3.5e-192 675.2 423 83.9
unitig_0.g2070 Utricularia gibba HOM05D005039 ORTHO05D006145 5.6e-190 667.9 461 78.1
Mapoly0094s0006 Marchantia polymorpha HOM05D005039 ORTHO05D006145 1.2e-189 666.8 468 72.6
CSS0032758 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 1.6e-189 666.4 469 78.3
DCAR_020429 Daucus carota HOM05D005039 ORTHO05D006145 2.6e-187 659.1 383 90.1
CiPaw.05G212800 Carya illinoinensis HOM05D005039 ORTHO05D006145 1.1e-182 643.7 349 93.7
Cc02_g00100 Coffea canephora HOM05D005039 ORTHO05D006145 1.2e-171 607.1 373 84.2
Prupe.2G329100 Prunus persica HOM05D005039 ORTHO05D006145 1.7e-170 603.2 340 94.1
SMO304G0068 Selaginella moellendorffii HOM05D005039 ORTHO05D006145 1.7e-170 603.2 464 66.8
HPP92_014410 Vanilla planifolia HOM05D005039 ORTHO05D006145 2.4e-169 599.4 468 70.3
VMungo1127G0275 Vigna mungo HOM05D005039 ORTHO05D006145 1.1e-166 590.5 374 82.9
CBR_g72647 Chara braunii HOM05D005039 ORTHO05D006145 2.4e-164 582.8 470 63.0
Psat7g155320 Pisum sativum HOM05D005039 ORTHO05D006145 6.0e-160 568.2 365 84.1
Lj3A884T54 Lonicera japonica HOM05D005039 ORTHO05D006145 4.0e-156 555.4 324 91.7
BcaB05g25317 Brassica carinata HOM05D005039 ORTHO05D006145 3.7e-141 505.8 312 82.1
MD01G1239200 Malus domestica HOM05D005039 ORTHO05D006145 2.2e-138 496.5 365 73.2
Actinidia34332 Actinidia chinensis HOM05D005039 ORTHO05D006145 1.9e-137 493.4 308 87.3
CDE11G0732 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 1.7e-130 470.3 323 79.3
PGSC0003DMG401017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 6.5e-114 415.2 246 89.4
Haze_00371 Corylus avellana HOM05D005039 ORTHO05D006145 6.1e-96 355.5 239 81.2
COL.COLO4_15139 Corchorus olitorius HOM05D005039 ORTHO05D006145 8.3e-93 345.1 312 65.1
PGSC0003DMG402017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 2.3e-90 337.0 182 90.1
Actinidia24520 Actinidia chinensis HOM05D005039 ORTHO05D006145 9.8e-86 321.6 173 91.3
AagrBONN_evm.TU.Sc2ySwM_369.165 Anthoceros agrestis HOM05D005039 ORTHO05D006145 3.3e-81 306.6 302 57.0
Cre16.g674739 Chlamydomonas reinhardtii HOM05D005039 ORTHO05D006145 1.8e-79 300.8 505 37.6
AagrBONN_evm.TU.Sc2ySwM_117.727 Anthoceros agrestis HOM05D005039 ORTHO05D006145 6.2e-72 275.8 210 59.5
AagrBONN_evm.TU.Sc2ySwM_369.410 Anthoceros agrestis HOM05D005039 ORTHO05D006145 1.5e-70 271.2 294 54.4
BcaC03g14670 Brassica carinata HOM05D005039 ORTHO05D006145 2.0e-70 270.8 160 91.2
BcaB05g24073 Brassica carinata HOM05D005039 ORTHO05D006145 1.9e-60 237.7 140 91.4
CARHR057320 Cardamine hirsuta HOM05D005039 ORTHO05D006145 8.7e-58 228.8 406 42.4
EL10Ac3g05835 Beta vulgaris HOM05D005039 ORTHO05D006145 1.3e-56 224.9 195 67.7
Cc02_g00110 Coffea canephora HOM05D005039 ORTHO05D006145 9.0e-55 218.8 119 97.5
MCO06G137 Micromonas commoda HOM05D005039 ORTHO05D006145 4.3e-49 199.9 332 37.3
SEGI_29432 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 2.6e-46 190.7 111 91.0
CDE11G0023 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 9.9e-46 188.7 107 80.4
SEGI_13634 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 1.7e-45 188.0 105 82.9
PRCOL_00000150 Prasinoderma coloniale HOM05D005039 ORTHO05D006145 2.2e-45 187.6 491 31.2
Cpa.g.sc43.133 Carica papaya HOM05D005039 ORTHO05D006145 5.5e-44 183.0 111 87.4
CSS0027952 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 1.4e-39 168.3 91 94.5
CSS0015728 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 9.6e-33 145.6 76 96.1
Cpa.g.sc43.136 Carica papaya HOM05D005039 ORTHO05D006145 1.5e-30 138.3 72 91.7
Carub.0008s0531 Capsella rubella HOM05D005039 ORTHO05D006145 1.3e-29 135.2 81 86.4
ClCG09G017320 Citrullus lanatus HOM05D005039 ORTHO05D006145 1.4e-28 131.7 72 86.1
COL.COLO4_15138 Corchorus olitorius HOM05D005039 ORTHO05D006145 1.9e-28 131.3 72 86.1
Cpa.g.sc43.132 Carica papaya HOM05D005039 ORTHO05D006145 4.2e-28 130.2 74 86.5
CSS0031224 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 5.1e-26 123.2 74 82.4
SHI14975 Sapria himalayana HOM05D000023 ORTHO05D000014 1.3e-24 118.6 79 75.9
Oeu028985.2 Olea europaea HOM05D005039 ORTHO05D006145 1.1e-23 115.5 99 65.7
Solyc07g045270.2 Solanum lycopersicum HOM05D005039 ORTHO05D006145 4.5e-22 110.2 57 89.5
SEGI_05893 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 2.5e-20 104.4 57 86.0
Carub.0008s0533 Capsella rubella HOM05D005039 ORTHO05D006145 1.1e-15 89.0 52 88.5
Potri.019G042201 Populus trichocarpa HOM05D005039 ORTHO05D006145 5.9e-14 83.2 52 88.5
MD01G1239000 Malus domestica HOM05D005039 ORTHO05D006145 7.7e-14 82.8 46 97.8
EL10Ac7g16242 Beta vulgaris HOM05D005039 ORTHO05D006145 2.9e-13 80.9 44 93.2
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 1.1e-12 79.0 57 71.9
GSVIVG01028619001 Vitis vinifera HOM05D005039 ORTHO05D048867 3.2e-12 77.4 74 60.8
MD01G1239100 Malus domestica HOM05D005039 ORTHO05D006145 5.3e-07 60.1 33 93.9


User provided reference genes

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