Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016064 Carpinus fangiana HOM05D004457 ORTHO05D005282 6.6e-182 640.6 323 100.0
Haze_00385 Corylus avellana HOM05D004457 ORTHO05D005282 1.5e-173 612.8 323 96.0
CiPaw.05G214800 Carya illinoinensis HOM05D004457 ORTHO05D005282 2.1e-148 529.3 330 81.5
Thecc.05G219000 Theobroma cacao HOM05D004457 ORTHO05D005282 2.8e-148 528.9 323 81.1
Potri.013G079201 Populus trichocarpa HOM05D004457 ORTHO05D005282 7.1e-144 514.2 324 78.7
Prupe.2G328100 Prunus persica HOM05D004457 ORTHO05D005282 4.6e-143 511.5 324 78.1
TWI60G0869 Tripterygium wilfordii HOM05D004457 ORTHO05D005282 6.7e-142 507.7 323 75.9
Potri.013G079101 Populus trichocarpa HOM05D004457 ORTHO05D005282 9.6e-141 503.8 324 78.4
CiPaw.06G035200 Carya illinoinensis HOM05D004457 ORTHO05D005282 2.8e-140 502.3 323 77.7
COL.COLO4_15192 Corchorus olitorius HOM05D004457 ORTHO05D005282 1.5e-138 496.5 324 75.9
Manes.09G128300 Manihot esculenta HOM05D004457 ORTHO05D005282 4.5e-138 495.0 324 75.3
Actinidia34324 Actinidia chinensis HOM05D004457 ORTHO05D005282 7.6e-138 494.2 323 74.3
Cpa.g.sc43.116 Carica papaya HOM05D004457 ORTHO05D005282 7.6e-138 494.2 323 74.9
Gorai.003G055700 Gossypium raimondii HOM05D004457 ORTHO05D005282 1.3e-137 493.4 324 75.0
Gohir.D03G053500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.7e-137 493.0 324 75.3
MD01G1237700 Malus domestica HOM05D004457 ORTHO05D005282 3.8e-137 491.9 326 75.2
CSS0048555 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 4.9e-137 491.5 323 74.3
Gohir.A02G127500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 6.5e-137 491.1 324 75.3
MD07G1310300 Malus domestica HOM05D004457 ORTHO05D005282 1.9e-136 489.6 326 74.5
PGR142G0056 Punica granatum HOM05D004457 ORTHO05D005282 1.9e-136 489.6 324 72.5
GSVIVG01024347001 Vitis vinifera HOM05D004457 ORTHO05D005282 3.2e-136 488.8 323 72.1
Hma1.2p1_0419F.1_g149440 Hydrangea macrophylla HOM05D004457 ORTHO05D005282 7.1e-136 487.6 363 66.4
CiPaw.06G035100 Carya illinoinensis HOM05D004457 ORTHO05D005282 1.2e-135 486.9 323 74.6
CSS0037309 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 4.6e-135 485.0 323 72.4
Atru.chr12.1918 Acer truncatum HOM05D004457 ORTHO05D005282 3.0e-134 482.3 323 73.7
Actinidia08758 Actinidia chinensis HOM05D004457 ORTHO05D005282 3.0e-134 482.3 325 73.2
CSS0045385 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 3.0e-134 482.3 323 72.4
Ciclev10021193m.g Citrus clementina HOM05D004457 ORTHO05D005282 5.7e-133 478.0 323 73.4
RcHm_v2.0_Chr1g0384491 Rosa chinensis HOM05D004457 ORTHO05D005282 1.3e-132 476.9 325 72.6
TAR375G0461 Trochodendron aralioides HOM05D004457 ORTHO05D005282 2.4e-131 472.6 323 72.1
CSS0031792 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 3.1e-131 472.2 306 74.5
Nn6g33553 Nelumbo nucifera HOM05D004457 ORTHO05D005282 9.0e-131 470.7 323 69.3
Glyma.11G009300 Glycine max HOM05D004457 ORTHO05D005282 2.0e-130 469.5 323 70.9
Gohir.A08G221660 Gossypium hirsutum HOM05D004457 ORTHO05D005282 4.5e-130 468.4 324 71.0
Lj3A885T46 Lonicera japonica HOM05D004457 ORTHO05D005282 7.6e-130 467.6 328 71.0
Glyma.01G233500 Glycine max HOM05D004457 ORTHO05D005282 1.0e-129 467.2 323 71.2
FvH4_7g34140 Fragaria vesca HOM05D004457 ORTHO05D005282 1.7e-129 466.5 325 70.8
Gorai.004G256600 Gossypium raimondii HOM05D004457 ORTHO05D005282 2.2e-129 466.1 324 70.7
Gohir.D08G241200 Gossypium hirsutum HOM05D004457 ORTHO05D005282 8.5e-129 464.2 324 70.7
Eucgr.K00073 Eucalyptus grandis HOM05D004457 ORTHO05D005282 1.1e-128 463.8 327 70.3
Sabra13G0073500 Salix brachista HOM05D004457 ORTHO05D005282 1.9e-128 463.0 296 77.0
Sed0007489 Sechium edule HOM05D004457 ORTHO05D005282 1.9e-128 463.0 323 69.7
FAN10G1543 Fragaria x ananassa HOM05D004457 ORTHO05D005282 2.7e-127 459.1 338 68.0
arahy.Tifrunner.gnm1.ann1.R5JYMV Arachis hypogaea HOM05D004457 ORTHO05D005282 4.6e-127 458.4 324 70.1
arahy.Tifrunner.gnm1.ann1.9FAL4E Arachis hypogaea HOM05D004457 ORTHO05D005282 1.8e-126 456.4 324 69.8
Phvul.002G041000 Phaseolus vulgaris HOM05D004457 ORTHO05D005282 1.8e-126 456.4 323 69.0
AT1G65020 Arabidopsis thaliana HOM05D004457 ORTHO05D005282 3.0e-126 455.7 323 71.2
Rhsim03G0223200 Rhododendron simsii HOM05D004457 ORTHO05D005282 1.5e-125 453.4 379 61.5
AL2G19640 Arabidopsis lyrata HOM05D004457 ORTHO05D005282 1.9e-125 453.0 323 70.6
Aqoxy3G02297 Aquilegia oxysepala HOM05D004457 ORTHO05D005282 3.3e-125 452.2 324 67.9
THA.LOC104805712 Tarenaya hassleriana HOM05D004457 ORTHO05D005282 9.7e-125 450.7 325 70.2
CsaV3_3G050090 Cucumis sativus L. HOM05D004457 ORTHO05D005282 1.6e-124 449.9 323 68.7
Cc02_g00170 Coffea canephora HOM05D004457 ORTHO05D005282 3.7e-124 448.7 338 66.9
vmacro06531 Vaccinium macrocarpon HOM05D004457 ORTHO05D005282 3.7e-124 448.7 392 59.9
Medtr5g007360 Medicago truncatula HOM05D004457 ORTHO05D005282 4.8e-124 448.4 323 67.2
Lalb_Chr09g0320121 Lupinus albus HOM05D004457 ORTHO05D005282 6.3e-124 448.0 324 70.4
AUR62028201 Chenopodium quinoa HOM05D004457 ORTHO05D005282 1.4e-123 446.8 323 66.3
EL10Ac3g05054 Beta vulgaris HOM05D004457 ORTHO05D005282 2.4e-123 446.0 323 65.0
VMungo1215G3184 Vigna mungo HOM05D004457 ORTHO05D005282 2.6e-122 442.6 323 67.8
Sp5g19410 Schrenkiella parvula HOM05D004457 ORTHO05D005282 3.4e-122 442.2 323 67.8
Aa31LG2G2220 Aethionema arabicum HOM05D004457 ORTHO05D005282 7.7e-122 441.0 341 65.1
Ca_24434_v3 Cicer arietinum L. HOM05D004457 ORTHO05D005282 2.2e-121 439.5 323 66.9
Nitab4.5_0004530g0100 Nicotiana tabacum HOM05D004457 ORTHO05D005282 8.5e-121 437.6 323 68.1
Oeu062823.1 Olea europaea HOM05D004457 ORTHO05D005282 1.4e-120 436.8 326 66.9
PSO063G5530 Papaver somniferum HOM05D004457 ORTHO05D005282 1.4e-120 436.8 323 63.8
Lsat_1_v5_gn_8_3720 Lactuca sativa HOM05D004457 ORTHO05D005282 3.6e-119 432.2 324 67.0
Carub.0002s1019 Capsella rubella HOM05D004457 ORTHO05D005282 7.9e-119 431.0 324 68.2
ClCG09G017170 Citrullus lanatus HOM05D004457 ORTHO05D005282 7.9e-119 431.0 325 68.6
PSO782G5560 Papaver somniferum HOM05D004457 ORTHO05D005282 7.9e-119 431.0 323 63.2
TPR.G37899 Trifolium pratense HOM05D004457 ORTHO05D005282 1.0e-118 430.6 364 61.0
Thhalv10022467m.g Eutrema salsugineum HOM05D004457 ORTHO05D005282 1.8e-118 429.9 323 66.6
CsaV3_2G036630 Cucumis sativus L. HOM05D004457 ORTHO05D005282 8.8e-118 427.6 325 68.0
C06p38960 Brassica napus HOM05D004457 ORTHO05D005282 2.0e-117 426.4 323 65.9
BolC6t38988H Brassica oleracea HOM05D004457 ORTHO05D005282 2.0e-117 426.4 323 65.9
BraA07t30901Z Brassica rapa HOM05D004457 ORTHO05D005282 5.7e-117 424.9 323 65.9
BraA02t06354Z Brassica rapa HOM05D004457 ORTHO05D005282 9.7e-117 424.1 333 64.0
Psat2g189240 Pisum sativum HOM05D004457 ORTHO05D005282 9.7e-117 424.1 324 65.4
LjContig00222g0016666 Lotus japonicus HOM05D004457 ORTHO05D005282 3.7e-116 422.2 324 67.3
Hund21100 Selenicereus undatus HOM05D004457 ORTHO05D005282 3.7e-116 422.2 323 65.0
Peaxi162Scf00516g00661 Petunia axillaris HOM05D004457 ORTHO05D005282 4.8e-116 421.8 323 67.2
Solyc03g097180.3 Solanum lycopersicum HOM05D004457 ORTHO05D005282 4.8e-116 421.8 323 65.3
HanXRQChr04g0105271 Helianthus annuus HOM05D004457 ORTHO05D005282 8.2e-116 421.0 326 65.3
BcaB05g25319 Brassica carinata HOM05D004457 ORTHO05D005282 1.4e-115 420.2 324 64.5
PGSC0003DMG400003162 Solanum tuberosum HOM05D004457 ORTHO05D005282 3.1e-115 419.1 323 65.0
BolC2t08250H Brassica oleracea HOM05D004457 ORTHO05D005282 4.1e-115 418.7 333 62.8
C02p21100 Brassica napus HOM05D004457 ORTHO05D005282 3.4e-114 415.6 349 59.9
Nitab4.5_0000021g0740 Nicotiana tabacum HOM05D004457 ORTHO05D005282 3.4e-114 415.6 314 66.6
A02p12980 Brassica napus HOM05D004457 ORTHO05D005282 1.9e-112 409.8 359 59.3
CAN.G1131.28 Capsicum annuum HOM05D004457 ORTHO05D005282 9.4e-112 407.5 307 67.1
Sc13g0010930 Simmondsia chinensis HOM05D004457 ORTHO05D005282 2.0e-109 399.8 308 62.7
A07p32750 Brassica napus HOM05D004457 ORTHO05D005282 1.7e-108 396.7 370 57.0
MSTRG.26922 Avicennia marina HOM05D004457 ORTHO05D005282 2.2e-108 396.4 327 59.6
Peaxi162Scf00133g00612 Petunia axillaris HOM05D004457 ORTHO05D005282 4.8e-108 395.2 323 63.2
CiPaw.06G035000 Carya illinoinensis HOM05D004457 ORTHO05D005282 1.4e-107 393.7 285 71.6
FAN28G1138 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.2e-106 390.6 325 63.7
Duzib106G1483 Durio zibethinus HOM05D004457 ORTHO05D005282 5.9e-106 388.3 323 62.2
MELO3C021859.2 Cucumis melo HOM05D004457 ORTHO05D005282 6.5e-105 384.8 295 67.5
Migut.F00082 Erythranthe guttata HOM05D004457 ORTHO05D005282 8.5e-105 384.4 326 59.5
SalBow2G1767 Salvia bowleyana HOM05D004457 ORTHO05D005282 1.5e-104 383.6 326 58.6
Oeu015511.1 Olea europaea HOM05D004457 ORTHO05D005282 4.7e-103 378.6 324 59.9
Lj1A1034G49 Lonicera japonica HOM05D004457 ORTHO05D005282 1.4e-102 377.1 249 73.9
SGA_v2.0_scaffold50G18449 Striga asiatica HOM05D004457 ORTHO05D005282 1.8e-102 376.7 362 55.5
QL09p022526 Quercus lobata HOM05D004457 ORTHO05D005282 6.7e-102 374.8 221 81.0
MSTRG.8 Avicennia marina HOM05D004457 ORTHO05D005282 4.4e-101 372.1 326 57.7
unitig_90.g27538 Utricularia gibba HOM05D004457 ORTHO05D005282 8.2e-100 367.9 326 58.9
PSO541G4777 Papaver somniferum HOM05D004457 ORTHO05D005282 2.4e-99 366.3 362 53.0
SalBow4G0372 Salvia bowleyana HOM05D004457 ORTHO05D005282 1.2e-98 364.0 326 58.0
SalBow4G0893 Salvia bowleyana HOM05D004457 ORTHO05D005282 1.6e-98 363.6 326 58.3
FAN01G1413 Fragaria x ananassa HOM05D004457 ORTHO05D005282 3.5e-98 362.5 306 62.1
ATR0665G122 Amborella trichopoda HOM05D004457 ORTHO05D005282 1.0e-97 360.9 323 55.7
HPP92_001524 Vanilla planifolia HOM05D004457 ORTHO05D005282 2.2e-97 359.8 324 55.2
Actinidia28413 Actinidia chinensis HOM05D004457 ORTHO05D005282 8.5e-97 357.8 234 73.5
Zm00001eb024890 Zea mays HOM05D004457 ORTHO05D005282 2.1e-95 353.2 329 53.2
Nitab4.5_0004268g0020 Nicotiana tabacum HOM05D004457 ORTHO05D005282 5.2e-94 348.6 267 64.0
SGA_v2.0_scaffold44G16903 Striga asiatica HOM05D004457 ORTHO05D005282 2.2e-92 343.2 346 51.7
Cfa016063 Carpinus fangiana HOM05D004457 ORTHO05D005282 2.0e-90 336.7 325 60.0
Cfa016062 Carpinus fangiana HOM05D004457 ORTHO05D005282 1.8e-83 313.5 294 61.6
Haze_00386 Corylus avellana HOM05D004457 ORTHO05D005282 5.9e-82 308.5 290 60.0
FAN25G0067 Fragaria x ananassa HOM05D004457 ORTHO05D005282 6.6e-81 305.1 320 54.1
PSO675G5198 Papaver somniferum HOM05D004457 ORTHO05D005282 4.0e-78 295.8 259 58.7
SEGI_39651 Sequoiadendron giganteum HOM05D004457 ORTHO05D005282 8.3e-76 288.1 323 48.0
Hund09804 Selenicereus undatus HOM05D004457 ORTHO05D005282 9.2e-75 284.6 308 50.0
Sed0022448 Sechium edule HOM05D004457 ORTHO05D005282 3.9e-73 279.3 211 68.2
CARHR056470 Cardamine hirsuta HOM05D004457 ORTHO05D005282 1.9e-72 276.9 210 68.6
AUR62002084 Chenopodium quinoa HOM05D004457 ORTHO05D005282 5.2e-70 268.9 323 47.7
FAN03G1923 Fragaria x ananassa HOM05D004457 ORTHO05D005282 2.0e-69 266.9 171 75.4
CDE02G1044 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 1.6e-66 257.3 247 51.0
Dinv29138 Davidia involucrata HOM05D004457 ORTHO05D005282 5.4e-59 232.3 145 79.3
ClCG09G013130 Citrullus lanatus HOM05D004457 ORTHO05D005282 1.6e-58 230.7 174 66.1
Gohir.A08G097750 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.9e-56 223.8 257 49.4
ECA233G5338 Erigeron canadensis HOM05D004457 ORTHO05D005282 4.7e-55 219.2 165 66.1
ClCG09G013110 Citrullus lanatus HOM05D004457 ORTHO05D005282 2.6e-53 213.4 150 65.3
Sopen03g027920 Solanum pennellii HOM05D004457 ORTHO05D005282 1.9e-51 207.2 145 71.0
BolC4t27312H Brassica oleracea HOM05D004457 ORTHO05D005282 9.2e-51 204.9 163 62.6
Dinv29137 Davidia involucrata HOM05D004457 ORTHO05D005282 9.2e-51 204.9 127 74.8
Nitab4.5_0000338g0060 Nicotiana tabacum HOM05D004457 ORTHO05D005282 2.8e-47 193.4 164 62.2
Mapoly0043s0014 Marchantia polymorpha HOM05D004457 ORTHO05D005282 1.5e-40 171.0 345 34.2
Migut.F00937 Erythranthe guttata HOM05D004457 ORTHO05D005282 1.3e-39 167.9 151 55.6
Pp3c11_5580 Physcomitrium patens HOM05D004457 ORTHO05D005282 2.8e-39 166.8 341 36.7
BcaC02g08145 Brassica carinata HOM05D004457 ORTHO05D005282 2.9e-36 156.8 121 62.0
SMO364G0318 Selaginella moellendorffii HOM05D004457 ORTHO05D005282 3.0e-33 146.7 217 36.4
ECA233G2641 Erigeron canadensis HOM05D004457 ORTHO05D005282 3.9e-33 146.4 120 60.8
AagrBONN_evm.TU.Sc2ySwM_228.2639 Anthoceros agrestis HOM05D004457 ORTHO05D005282 1.9e-32 144.1 214 37.4
Sopen03g027940 Solanum pennellii HOM05D004457 ORTHO05D005282 9.6e-32 141.7 119 56.3
DCAR_020421 Daucus carota HOM05D004457 ORTHO05D005282 2.0e-29 134.0 83 75.9
Pp3c10_23490 Physcomitrium patens HOM05D004457 ORTHO05D005282 4.9e-28 129.4 317 30.0
RcHm_v2.0_Chr7g0241921 Rosa chinensis HOM05D004457 ORTHO05D005282 1.1e-22 111.7 96 62.5
Nitab4.5_0000845g0010 Nicotiana tabacum HOM05D004457 ORTHO05D005282 1.5e-21 107.8 118 50.0
Medtr3g091660 Medicago truncatula HOM05D004457 ORTHO05D005282 2.6e-21 107.1 88 60.2
Gohir.A08G102425 Gossypium hirsutum HOM05D004457 ORTHO05D005282 2.9e-20 103.6 84 59.5
MELO3C003309.2 Cucumis melo HOM05D004457 ORTHO05D005282 8.4e-20 102.1 84 66.7
C07p33100 Brassica napus HOM05D004457 ORTHO05D005282 1.1e-19 101.7 74 60.8
BcaC06g34068 Brassica carinata HOM05D004457 ORTHO05D005282 2.5e-19 100.5 74 60.8
BolC9t54837H Brassica oleracea HOM05D004457 ORTHO05D005282 2.5e-19 100.5 74 60.8
CDE02G4136 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 4.3e-16 89.7 77 53.2
QL09p022513 Quercus lobata HOM05D004457 ORTHO05D005282 1.3e-15 88.2 58 77.6
arahy.Tifrunner.gnm1.ann1.383HND Arachis hypogaea HOM05D004457 ORTHO05D005282 4.8e-15 86.3 60 73.3
Medtr3g091670 Medicago truncatula HOM05D004457 ORTHO05D005282 5.5e-11 72.8 60 63.3
QL03p072618 Quercus lobata HOM05D000132 ORTHO05D000058 9.4e-11 72.0 55 72.7
arahy.Tifrunner.gnm1.ann1.G80LMI Arachis hypogaea HOM05D004457 ORTHO05D082520 2.8e-07 60.5 38 76.3
Gohir.A11G267601 Gossypium hirsutum HOM05D004457 ORTHO05D005282 4.8e-07 59.7 42 64.3


User provided reference genes

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