Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016063 Carpinus fangiana HOM05D004457 ORTHO05D005282 8.4e-174 613.6 314 100.0
Cfa016062 Carpinus fangiana HOM05D004457 ORTHO05D005282 3.5e-111 405.6 293 78.2
Haze_00386 Corylus avellana HOM05D004457 ORTHO05D005282 2.2e-97 359.8 288 71.5
Cfa016064 Carpinus fangiana HOM05D004457 ORTHO05D005282 9.8e-90 334.3 325 60.0
Haze_00385 Corylus avellana HOM05D004457 ORTHO05D005282 3.7e-89 332.4 325 60.0
Prupe.2G328100 Prunus persica HOM05D004457 ORTHO05D005282 4.1e-88 328.9 325 57.5
CiPaw.06G035200 Carya illinoinensis HOM05D004457 ORTHO05D005282 2.7e-87 326.2 326 59.2
CiPaw.05G214800 Carya illinoinensis HOM05D004457 ORTHO05D005282 4.6e-87 325.5 332 58.4
Thecc.05G219000 Theobroma cacao HOM05D004457 ORTHO05D005282 4.6e-87 325.5 325 57.8
Potri.013G079101 Populus trichocarpa HOM05D004457 ORTHO05D005282 7.8e-87 324.7 325 58.5
Potri.013G079201 Populus trichocarpa HOM05D004457 ORTHO05D005282 1.3e-86 323.9 325 58.5
MD07G1310300 Malus domestica HOM05D004457 ORTHO05D005282 5.0e-86 322.0 327 56.9
Manes.09G128300 Manihot esculenta HOM05D004457 ORTHO05D005282 4.3e-85 318.9 324 56.8
PGR142G0056 Punica granatum HOM05D004457 ORTHO05D005282 7.3e-85 318.2 325 53.5
RcHm_v2.0_Chr1g0384491 Rosa chinensis HOM05D004457 ORTHO05D005282 7.3e-85 318.2 326 55.8
TWI60G0869 Tripterygium wilfordii HOM05D004457 ORTHO05D005282 2.8e-84 316.2 325 56.6
GSVIVG01024347001 Vitis vinifera HOM05D004457 ORTHO05D005282 1.4e-83 313.9 325 54.8
CiPaw.06G035100 Carya illinoinensis HOM05D004457 ORTHO05D005282 1.8e-83 313.5 325 56.9
Atru.chr12.1918 Acer truncatum HOM05D004457 ORTHO05D005282 3.1e-83 312.8 325 56.0
Eucgr.K00073 Eucalyptus grandis HOM05D004457 ORTHO05D005282 1.5e-82 310.5 328 53.7
CSS0045385 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 2.6e-82 309.7 327 52.3
FvH4_7g34140 Fragaria vesca HOM05D004457 ORTHO05D005282 2.6e-82 309.7 326 54.9
Gohir.D03G053500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 4.4e-82 308.9 325 53.5
MD01G1237700 Malus domestica HOM05D004457 ORTHO05D005282 4.4e-82 308.9 327 55.0
FAN10G1543 Fragaria x ananassa HOM05D004457 ORTHO05D005282 2.2e-81 306.6 339 53.1
Ciclev10021193m.g Citrus clementina HOM05D004457 ORTHO05D005282 2.9e-81 306.2 325 55.4
Gorai.003G055700 Gossypium raimondii HOM05D004457 ORTHO05D005282 2.9e-81 306.2 325 53.2
Actinidia34324 Actinidia chinensis HOM05D004457 ORTHO05D005282 3.7e-81 305.8 325 53.5
CSS0037309 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 3.7e-81 305.8 327 51.7
Actinidia08758 Actinidia chinensis HOM05D004457 ORTHO05D005282 6.4e-81 305.1 325 53.5
Lj3A885T46 Lonicera japonica HOM05D004457 ORTHO05D005282 8.3e-81 304.7 329 52.6
Cpa.g.sc43.116 Carica papaya HOM05D004457 ORTHO05D005282 2.4e-80 303.1 325 54.5
COL.COLO4_15192 Corchorus olitorius HOM05D004457 ORTHO05D005282 4.1e-80 302.4 327 54.7
Gohir.A02G127500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 7.1e-80 301.6 325 52.6
Sabra13G0073500 Salix brachista HOM05D004457 ORTHO05D005282 9.2e-80 301.2 310 57.4
CSS0048555 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 1.2e-79 300.8 325 53.5
ClCG09G017170 Citrullus lanatus HOM05D004457 ORTHO05D005282 1.3e-78 297.4 325 52.9
Gorai.004G256600 Gossypium raimondii HOM05D004457 ORTHO05D005282 1.3e-78 297.4 325 53.5
CSS0031792 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 6.6e-78 295.0 310 54.2
Gohir.D08G241200 Gossypium hirsutum HOM05D004457 ORTHO05D005282 6.6e-78 295.0 325 53.2
Nn6g33553 Nelumbo nucifera HOM05D004457 ORTHO05D005282 8.6e-78 294.7 325 51.1
Gohir.A08G221660 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.1e-77 294.3 325 53.2
arahy.Tifrunner.gnm1.ann1.R5JYMV Arachis hypogaea HOM05D004457 ORTHO05D005282 1.5e-77 293.9 326 52.5
CsaV3_2G036630 Cucumis sativus L. HOM05D004457 ORTHO05D005282 1.5e-77 293.9 325 52.6
Hma1.2p1_0419F.1_g149440 Hydrangea macrophylla HOM05D004457 ORTHO05D005282 4.3e-77 292.4 365 47.1
arahy.Tifrunner.gnm1.ann1.9FAL4E Arachis hypogaea HOM05D004457 ORTHO05D005282 5.6e-77 292.0 326 52.1
AUR62028201 Chenopodium quinoa HOM05D004457 ORTHO05D005282 7.3e-77 291.6 325 51.1
Cc02_g00170 Coffea canephora HOM05D004457 ORTHO05D005282 9.5e-77 291.2 339 49.9
FAN28G1138 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.6e-76 290.4 322 53.4
AT1G65020 Arabidopsis thaliana HOM05D004457 ORTHO05D005282 2.1e-76 290.0 327 52.6
Aqoxy3G02297 Aquilegia oxysepala HOM05D004457 ORTHO05D005282 3.6e-76 289.3 327 52.0
TAR375G0461 Trochodendron aralioides HOM05D004457 ORTHO05D005282 3.6e-76 289.3 323 52.3
Sed0007489 Sechium edule HOM05D004457 ORTHO05D005282 1.1e-75 287.7 325 50.5
AL2G19640 Arabidopsis lyrata HOM05D004457 ORTHO05D005282 1.8e-75 287.0 327 51.7
Lalb_Chr09g0320121 Lupinus albus HOM05D004457 ORTHO05D005282 6.8e-75 285.0 325 51.4
THA.LOC104805712 Tarenaya hassleriana HOM05D004457 ORTHO05D005282 6.8e-75 285.0 326 51.2
Glyma.11G009300 Glycine max HOM05D004457 ORTHO05D005282 8.9e-75 284.6 325 49.8
EL10Ac3g05054 Beta vulgaris HOM05D004457 ORTHO05D005282 1.2e-74 284.3 325 49.5
C06p38960 Brassica napus HOM05D004457 ORTHO05D005282 1.2e-74 284.3 325 51.1
BolC6t38988H Brassica oleracea HOM05D004457 ORTHO05D005282 1.2e-74 284.3 325 51.1
Glyma.01G233500 Glycine max HOM05D004457 ORTHO05D005282 2.6e-74 283.1 325 49.8
Sp5g19410 Schrenkiella parvula HOM05D004457 ORTHO05D005282 2.6e-74 283.1 326 50.0
vmacro06531 Vaccinium macrocarpon HOM05D004457 ORTHO05D005282 4.4e-74 282.3 394 46.2
BraA07t30901Z Brassica rapa HOM05D004457 ORTHO05D005282 7.6e-74 281.6 324 50.9
CsaV3_3G050090 Cucumis sativus L. HOM05D004457 ORTHO05D005282 1.7e-73 280.4 325 49.2
Peaxi162Scf00516g00661 Petunia axillaris HOM05D004457 ORTHO05D005282 2.2e-73 280.0 299 55.9
Nitab4.5_0004530g0100 Nicotiana tabacum HOM05D004457 ORTHO05D005282 6.4e-73 278.5 309 52.8
VMungo1215G3184 Vigna mungo HOM05D004457 ORTHO05D005282 6.4e-73 278.5 325 49.5
Oeu062823.1 Olea europaea HOM05D004457 ORTHO05D005282 8.4e-73 278.1 327 50.8
Carub.0002s1019 Capsella rubella HOM05D004457 ORTHO05D005282 1.9e-72 276.9 328 50.3
LjContig00222g0016666 Lotus japonicus HOM05D004457 ORTHO05D005282 3.2e-72 276.2 326 50.6
Hund21100 Selenicereus undatus HOM05D004457 ORTHO05D005282 3.2e-72 276.2 325 50.2
Phvul.002G041000 Phaseolus vulgaris HOM05D004457 ORTHO05D005282 9.2e-72 274.6 325 48.6
Lsat_1_v5_gn_8_3720 Lactuca sativa HOM05D004457 ORTHO05D005282 1.2e-71 274.2 327 49.2
Aa31LG2G2220 Aethionema arabicum HOM05D004457 ORTHO05D005282 3.5e-71 272.7 342 47.7
Solyc03g097180.3 Solanum lycopersicum HOM05D004457 ORTHO05D005282 6.0e-71 271.9 309 50.8
CAN.G1131.28 Capsicum annuum HOM05D004457 ORTHO05D005282 1.7e-70 270.4 289 53.3
PGSC0003DMG400003162 Solanum tuberosum HOM05D004457 ORTHO05D005282 5.1e-70 268.9 309 50.5
CiPaw.06G035000 Carya illinoinensis HOM05D004457 ORTHO05D005282 8.6e-70 268.1 282 56.4
Nitab4.5_0000021g0740 Nicotiana tabacum HOM05D004457 ORTHO05D005282 1.1e-69 267.7 280 53.9
Ca_24434_v3 Cicer arietinum L. HOM05D004457 ORTHO05D005282 3.3e-69 266.2 327 49.5
Thhalv10022467m.g Eutrema salsugineum HOM05D004457 ORTHO05D005282 5.6e-69 265.4 326 48.8
Rhsim03G0223200 Rhododendron simsii HOM05D004457 ORTHO05D005282 7.3e-69 265.0 384 44.3
BraA02t06354Z Brassica rapa HOM05D004457 ORTHO05D005282 1.6e-68 263.8 336 47.0
Medtr5g007360 Medicago truncatula HOM05D004457 ORTHO05D005282 4.7e-68 262.3 325 48.0
A07p32750 Brassica napus HOM05D004457 ORTHO05D005282 6.2e-68 261.9 369 44.4
QL09p022526 Quercus lobata HOM05D004457 ORTHO05D005282 6.2e-68 261.9 223 64.1
MELO3C021859.2 Cucumis melo HOM05D004457 ORTHO05D005282 1.1e-67 261.2 283 53.4
SalBow2G1767 Salvia bowleyana HOM05D004457 ORTHO05D005282 1.4e-67 260.8 327 47.7
Sc13g0010930 Simmondsia chinensis HOM05D004457 ORTHO05D005282 1.4e-67 260.8 306 47.4
HanXRQChr04g0105271 Helianthus annuus HOM05D004457 ORTHO05D005282 2.4e-67 260.0 329 48.0
SalBow4G0372 Salvia bowleyana HOM05D004457 ORTHO05D005282 2.4e-67 260.0 320 48.4
SalBow4G0893 Salvia bowleyana HOM05D004457 ORTHO05D005282 2.4e-67 260.0 320 48.4
Psat2g189240 Pisum sativum HOM05D004457 ORTHO05D005282 3.1e-67 259.6 328 47.3
BolC2t08250H Brassica oleracea HOM05D004457 ORTHO05D005282 4.0e-67 259.2 336 46.1
Migut.F00082 Erythranthe guttata HOM05D004457 ORTHO05D005282 4.0e-67 259.2 327 48.0
PSO063G5530 Papaver somniferum HOM05D004457 ORTHO05D005282 5.2e-67 258.8 325 45.2
PSO782G5560 Papaver somniferum HOM05D004457 ORTHO05D005282 8.9e-67 258.1 325 45.5
BcaB05g25319 Brassica carinata HOM05D004457 ORTHO05D005282 2.0e-66 256.9 328 47.6
C02p21100 Brassica napus HOM05D004457 ORTHO05D005282 7.6e-66 255.0 352 44.0
Peaxi162Scf00133g00612 Petunia axillaris HOM05D004457 ORTHO05D005282 2.2e-65 253.4 325 47.7
MSTRG.26922 Avicennia marina HOM05D004457 ORTHO05D005282 4.9e-65 252.3 329 46.2
SGA_v2.0_scaffold44G16903 Striga asiatica HOM05D004457 ORTHO05D005282 4.9e-65 252.3 347 45.5
Actinidia28413 Actinidia chinensis HOM05D004457 ORTHO05D005282 6.4e-65 251.9 233 56.7
TPR.G37899 Trifolium pratense HOM05D004457 ORTHO05D005282 1.1e-64 251.1 366 43.7
A02p12980 Brassica napus HOM05D004457 ORTHO05D005282 3.2e-64 249.6 362 43.6
Nitab4.5_0004268g0020 Nicotiana tabacum HOM05D004457 ORTHO05D005282 7.8e-63 245.0 285 49.8
Oeu015511.1 Olea europaea HOM05D004457 ORTHO05D005282 7.8e-63 245.0 328 45.7
unitig_90.g27538 Utricularia gibba HOM05D004457 ORTHO05D005282 7.8e-63 245.0 321 47.7
ATR0665G122 Amborella trichopoda HOM05D004457 ORTHO05D005282 3.9e-62 242.7 325 43.4
SGA_v2.0_scaffold50G18449 Striga asiatica HOM05D004457 ORTHO05D005282 1.9e-61 240.4 363 42.1
FAN01G1413 Fragaria x ananassa HOM05D004457 ORTHO05D005282 2.4e-59 233.4 307 47.6
MSTRG.8 Avicennia marina HOM05D004457 ORTHO05D005282 5.8e-58 228.8 327 43.7
Lj1A1034G49 Lonicera japonica HOM05D004457 ORTHO05D005282 2.2e-57 226.9 249 51.0
HPP92_001524 Vanilla planifolia HOM05D004457 ORTHO05D005282 3.8e-57 226.1 325 42.8
Zm00001eb024890 Zea mays HOM05D004457 ORTHO05D005282 2.4e-56 223.4 329 41.3
PSO541G4777 Papaver somniferum HOM05D004457 ORTHO05D005282 2.1e-55 220.3 293 44.7
Duzib106G1483 Durio zibethinus HOM05D004457 ORTHO05D005282 2.8e-52 209.9 324 42.9
SEGI_39651 Sequoiadendron giganteum HOM05D004457 ORTHO05D005282 2.3e-46 190.3 326 37.4
Hund09804 Selenicereus undatus HOM05D004457 ORTHO05D005282 9.6e-45 184.9 305 40.0
CARHR056470 Cardamine hirsuta HOM05D004457 ORTHO05D005282 2.8e-44 183.3 209 50.2
Sed0022448 Sechium edule HOM05D004457 ORTHO05D005282 3.1e-43 179.9 211 50.2
PSO675G5198 Papaver somniferum HOM05D004457 ORTHO05D005282 4.5e-42 176.0 261 40.6
FAN25G0067 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.0e-41 174.9 319 41.7
CDE02G1044 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 5.5e-40 169.1 248 40.7
FAN03G1923 Fragaria x ananassa HOM05D004457 ORTHO05D005282 2.1e-39 167.2 170 56.5
Gohir.A08G097750 Gossypium hirsutum HOM05D004457 ORTHO05D005282 2.1e-36 157.1 256 41.4
ClCG09G013130 Citrullus lanatus HOM05D004457 ORTHO05D005282 7.6e-34 148.7 174 48.3
ECA233G5338 Erigeron canadensis HOM05D004457 ORTHO05D005282 7.2e-32 142.1 167 47.9
Nitab4.5_0000338g0060 Nicotiana tabacum HOM05D004457 ORTHO05D005282 3.6e-31 139.8 158 52.5
BolC4t27312H Brassica oleracea HOM05D004457 ORTHO05D005282 4.6e-31 139.4 165 48.5
ClCG09G013110 Citrullus lanatus HOM05D004457 ORTHO05D005282 1.0e-30 138.3 152 49.3
Dinv29138 Davidia involucrata HOM05D004457 ORTHO05D005282 6.7e-30 135.6 145 55.9
AUR62002084 Chenopodium quinoa HOM05D004457 ORTHO05D005282 1.6e-28 131.0 324 33.6
Mapoly0043s0014 Marchantia polymorpha HOM05D004457 ORTHO05D005282 1.8e-27 127.5 282 31.9
SMO364G0318 Selaginella moellendorffii HOM05D004457 ORTHO05D005282 1.2e-26 124.8 217 34.6
AagrBONN_evm.TU.Sc2ySwM_228.2639 Anthoceros agrestis HOM05D004457 ORTHO05D005282 2.2e-25 120.6 218 33.5
Dinv29137 Davidia involucrata HOM05D004457 ORTHO05D005282 1.1e-24 118.2 129 51.2
Migut.F00937 Erythranthe guttata HOM05D004457 ORTHO05D005282 5.5e-24 115.9 152 45.4
Pp3c11_5580 Physcomitrium patens HOM05D004457 ORTHO05D005282 1.6e-23 114.4 258 31.8
Sopen03g027920 Solanum pennellii HOM05D004457 ORTHO05D005282 3.6e-23 113.2 145 48.3
BcaC02g08145 Brassica carinata HOM05D004457 ORTHO05D005282 2.0e-21 107.5 117 50.4
Pp3c10_23490 Physcomitrium patens HOM05D004457 ORTHO05D005282 2.2e-20 104.0 219 33.3
DCAR_020421 Daucus carota HOM05D004457 ORTHO05D005282 4.1e-19 99.8 84 66.7
Sopen03g027940 Solanum pennellii HOM05D004457 ORTHO05D005282 2.0e-18 97.4 105 49.5
ECA233G2641 Erigeron canadensis HOM05D004457 ORTHO05D005282 1.0e-17 95.1 104 49.0
C07p33100 Brassica napus HOM05D004457 ORTHO05D005282 5.2e-14 82.8 76 57.9
BcaC06g34068 Brassica carinata HOM05D004457 ORTHO05D005282 1.1e-13 81.6 76 57.9
BolC9t54837H Brassica oleracea HOM05D004457 ORTHO05D005282 1.1e-13 81.6 76 57.9
RcHm_v2.0_Chr7g0241921 Rosa chinensis HOM05D004457 ORTHO05D005282 1.5e-13 81.3 92 51.1
Medtr3g091660 Medicago truncatula HOM05D004457 ORTHO05D005282 7.0e-11 72.4 112 39.3
Nitab4.5_0000845g0010 Nicotiana tabacum HOM05D004457 ORTHO05D005282 4.5e-10 69.7 129 38.8
CDE02G4136 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 7.7e-10 68.9 78 47.4
Gohir.A08G102425 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.3e-09 68.2 55 60.0
QL09p022513 Quercus lobata HOM05D004457 ORTHO05D005282 9.4e-08 62.0 48 70.8


User provided reference genes

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