Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016048 Carpinus fangiana HOM05D007064 ORTHO05D008772 4.4e-231 804.3 409 100.0
Haze_00398 Corylus avellana HOM05D007064 ORTHO05D008772 9.7e-223 776.5 413 96.1
CiPaw.05G216200 Carya illinoinensis HOM05D007064 ORTHO05D008772 8.6e-195 683.7 413 85.2
QL09p023233 Quercus lobata HOM05D007064 ORTHO05D008772 3.7e-190 668.3 417 83.5
Thecc.05G215700 Theobroma cacao HOM05D007064 ORTHO05D008772 6.4e-174 614.4 421 75.1
TAR629G0708 Trochodendron aralioides HOM05D007064 ORTHO05D008772 2.4e-173 612.5 400 78.5
GSVIVG01024376001 Vitis vinifera HOM05D007064 ORTHO05D008772 7.1e-173 610.9 415 75.7
Ciclev10020357m.g Citrus clementina HOM05D007064 ORTHO05D008772 2.7e-172 609.0 420 74.0
TWI60G0820 Tripterygium wilfordii HOM05D007064 ORTHO05D008772 1.3e-171 606.7 419 74.0
CSS0020222 Camellia sinensis var. sinensis HOM05D007064 ORTHO05D008772 1.1e-168 597.0 403 76.2
Rhsim03G0222700 Rhododendron simsii HOM05D007064 ORTHO05D008772 5.3e-168 594.7 437 70.9
CSS0020425 Camellia sinensis var. sinensis HOM05D007064 ORTHO05D008772 6.9e-168 594.3 403 75.9
Gohir.A11G303500 Gossypium hirsutum HOM05D007064 ORTHO05D008772 7.6e-167 590.9 422 71.8
CANSAT78G1989 Cannabis sativa HOM05D007064 ORTHO05D008772 2.2e-166 589.3 413 73.8
Duzib106G1646 Durio zibethinus HOM05D007064 ORTHO05D008772 7.1e-165 584.3 438 70.5
COL.COLO4_15235 Corchorus olitorius HOM05D007064 ORTHO05D008772 9.3e-165 583.9 421 72.7
FAN12G0288 Fragaria x ananassa HOM05D007064 ORTHO05D008772 1.6e-164 583.2 415 73.3
FvH4_4g01950 Fragaria vesca HOM05D007064 ORTHO05D008772 2.7e-164 582.4 413 73.4
Atru.chr12.1880 Acer truncatum HOM05D007064 ORTHO05D008772 6.0e-164 581.3 416 74.8
MD13G1202900 Malus domestica HOM05D007064 ORTHO05D008772 6.0e-164 581.3 411 74.5
Nn1g00178 Nelumbo nucifera HOM05D007064 ORTHO05D008772 1.0e-163 580.5 404 71.8
Actinidia34318 Actinidia chinensis HOM05D007064 ORTHO05D008772 3.0e-163 578.9 390 76.2
RcHm_v2.0_Chr4g0388921 Rosa chinensis HOM05D007064 ORTHO05D008772 1.5e-162 576.6 419 72.1
Sc19g0000100 Simmondsia chinensis HOM05D007064 ORTHO05D008772 1.5e-162 576.6 375 76.8
Gorai.007G348800 Gossypium raimondii HOM05D007064 ORTHO05D008772 1.9e-162 576.2 422 70.1
CsaV3_3G050060 Cucumis sativus L. HOM05D007064 ORTHO05D008772 7.3e-162 574.3 411 71.5
Migut.F00087 Erythranthe guttata HOM05D007064 ORTHO05D008772 1.3e-158 563.5 393 71.5
PSO063G1297 Papaver somniferum HOM05D007064 ORTHO05D008772 4.9e-158 561.6 378 73.5
arahy.Tifrunner.gnm1.ann1.P291P9 Arachis hypogaea HOM05D007064 ORTHO05D008772 1.6e-156 556.6 376 75.0
PSO782G0881 Papaver somniferum HOM05D007064 ORTHO05D008772 2.7e-156 555.8 378 73.5
Sabra19G0062000 Salix brachista HOM05D007064 ORTHO05D008772 2.7e-156 555.8 388 75.0
Nitab4.5_0004530g0030 Nicotiana tabacum HOM05D007064 ORTHO05D008772 1.3e-155 553.5 384 71.6
arahy.Tifrunner.gnm1.ann1.EDBW82 Arachis hypogaea HOM05D007064 ORTHO05D008772 3.0e-155 552.4 376 74.5
TWI60G1094 Tripterygium wilfordii HOM05D007064 ORTHO05D008772 3.0e-155 552.4 395 71.9
Nitab4.5_0000021g0660 Nicotiana tabacum HOM05D007064 ORTHO05D008772 2.5e-154 549.3 377 71.6
PGSC0003DMG400003147 Solanum tuberosum HOM05D007064 ORTHO05D008772 1.6e-153 546.6 393 70.0
Hund09801 Selenicereus undatus HOM05D007064 ORTHO05D000105 2.1e-153 546.2 374 72.5
Solyc03g097130.3 Solanum lycopersicum HOM05D007064 ORTHO05D008772 3.7e-153 545.4 393 69.5
Ah.04g156400 Amaranthus hybridus HOM05D007064 ORTHO05D008772 1.1e-152 543.9 371 71.2
THA.LOC104820893 Tarenaya hassleriana HOM05D007064 ORTHO05D008772 6.9e-152 541.2 432 66.4
Aqoxy3G02225 Aquilegia oxysepala HOM05D007064 ORTHO05D008772 1.5e-151 540.0 411 68.6
AUR62028195 Chenopodium quinoa HOM05D007064 ORTHO05D008772 2.6e-151 539.3 371 72.2
Thhalv10013656m.g Eutrema salsugineum HOM05D007064 ORTHO05D008772 4.5e-151 538.5 389 72.0
CAN.G1131.22 Capsicum annuum HOM05D007064 ORTHO05D008772 7.6e-151 537.7 377 71.6
ECA238G0775 Erigeron canadensis HOM05D007064 ORTHO05D008772 1.7e-150 536.6 377 71.4
Lalb_Chr09g0320151 Lupinus albus HOM05D007064 ORTHO05D008772 2.2e-150 536.2 374 71.9
Sp6g27320 Schrenkiella parvula HOM05D007064 ORTHO05D008772 2.2e-150 536.2 396 69.9
VMungo1215G2591 Vigna mungo HOM05D007064 ORTHO05D008772 6.4e-150 534.6 423 66.7
AL6G27830 Arabidopsis lyrata HOM05D007064 ORTHO05D008772 8.4e-150 534.3 388 71.9
Lsat_1_v5_gn_2_95061 Lactuca sativa HOM05D007064 ORTHO05D008772 1.9e-149 533.1 368 73.6
Glyma.11G009700 Glycine max HOM05D007064 ORTHO05D008772 2.5e-149 532.7 374 71.7
EL10Ac3g05060 Beta vulgaris HOM05D007064 ORTHO05D008772 3.2e-149 532.3 391 68.0
SGA_v2.0_scaffold44G16901 Striga asiatica HOM05D007064 ORTHO05D008772 4.2e-149 531.9 379 70.7
AT5G16810 Arabidopsis thaliana HOM05D007064 ORTHO05D008772 5.5e-149 531.6 388 70.9
Phvul.002G040600 Phaseolus vulgaris HOM05D007064 ORTHO05D008772 3.5e-148 528.9 399 67.9
Gohir.D11G318800 Gossypium hirsutum HOM05D007064 ORTHO05D008772 6.0e-148 528.1 345 75.9
LjContig00222g0020502 Lotus japonicus HOM05D007064 ORTHO05D008772 8.7e-147 524.2 373 71.3
HanXRQChr14g0451581 Helianthus annuus HOM05D007064 ORTHO05D008772 1.1e-146 523.9 374 70.3
ClCG09G013090 Citrullus lanatus HOM05D007064 ORTHO05D008772 1.9e-146 523.1 384 70.6
BolC2t06775H Brassica oleracea HOM05D007064 ORTHO05D008772 4.3e-146 521.9 385 70.4
BcaC03g18516 Brassica carinata HOM05D007064 ORTHO05D008772 9.6e-146 520.8 385 70.1
C02p08600 Brassica napus HOM05D007064 ORTHO05D008772 9.6e-146 520.8 385 70.1
Cc02_g00210 Coffea canephora HOM05D007064 ORTHO05D008772 4.0e-144 515.4 385 67.8
AUR62002078 Chenopodium quinoa HOM05D007064 ORTHO05D008772 1.1e-141 507.3 371 69.5
SalBow4G1574 Salvia bowleyana HOM05D007064 ORTHO05D008772 1.1e-141 507.3 387 66.9
SalBow4G1678 Salvia bowleyana HOM05D007064 ORTHO05D008772 1.9e-141 506.5 393 66.2
ATR0829G191 Amborella trichopoda HOM05D007064 ORTHO05D008772 3.2e-141 505.8 391 65.0
Prupe.1G025200 Prunus persica HOM05D007064 ORTHO05D008772 9.3e-141 504.2 359 75.2
BcaNung04953 Brassica carinata HOM05D007064 ORTHO05D008772 2.7e-140 502.7 388 68.6
Medtr5g006230 Medicago truncatula HOM05D007064 ORTHO05D008772 9.7e-138 494.2 371 70.4
BraA02t05344Z Brassica rapa HOM05D007064 ORTHO05D008772 1.6e-137 493.4 390 67.4
Aa31LG11G12770 Aethionema arabicum HOM05D007064 ORTHO05D008772 4.8e-137 491.9 415 63.9
Dinv17250 Davidia involucrata HOM05D007064 ORTHO05D008772 1.8e-136 490.0 356 73.6
TPR.G37970 Trifolium pratense HOM05D007064 ORTHO05D008772 1.8e-136 490.0 400 65.8
Ca_24438_v3 Cicer arietinum L. HOM05D007064 ORTHO05D008772 4.1e-136 488.8 411 64.0
A02p03790 Brassica napus HOM05D007064 ORTHO05D008772 5.3e-136 488.4 392 66.3
MELO3C003312.2 Cucumis melo HOM05D007064 ORTHO05D008772 5.0e-134 481.9 347 72.3
Lj1A1033T73 Lonicera japonica HOM05D007064 ORTHO05D008772 5.5e-133 478.4 364 70.3
Zm00001eb187800 Zea mays HOM05D007064 ORTHO05D008772 9.4e-133 477.6 395 62.5
Os02g0694800 Oryza sativa ssp. japonica HOM05D007064 ORTHO05D008772 1.1e-130 470.7 382 62.8
HPP92_025673 Vanilla planifolia HOM05D007064 ORTHO05D008772 3.3e-130 469.2 380 63.7
vmacro06523 Vaccinium macrocarpon HOM05D007064 ORTHO05D008772 9.1e-128 461.1 451 58.3
Peaxi162Scf00516g00675 Petunia axillaris HOM05D007064 ORTHO05D008772 2.6e-127 459.5 384 63.3
Hma1.2p1_0649F.1_g195260 Hydrangea macrophylla HOM05D007064 ORTHO05D008772 1.0e-126 457.6 282 80.5
Potri.019G050500 Populus trichocarpa HOM05D007064 ORTHO05D008772 1.3e-126 457.2 352 71.6
CDE11G0292 Ceratophyllum demersum HOM05D007064 ORTHO05D008772 3.8e-126 455.7 376 62.0
Manes.09G127400 Manihot esculenta HOM05D007064 ORTHO05D008772 5.0e-126 455.3 372 68.3
Sed0013285 Sechium edule HOM05D007064 ORTHO05D008772 5.1e-123 445.3 292 73.3
Eucgr.K00080 Eucalyptus grandis HOM05D007064 ORTHO05D008772 4.1e-120 435.6 270 80.0
SEGI_11081 Sequoiadendron giganteum HOM05D007064 ORTHO05D008772 3.5e-119 432.6 393 57.3
Sopen03g027870 Solanum pennellii HOM05D007064 ORTHO05D008772 5.5e-117 425.2 282 72.7
Carub.0006s1503 Capsella rubella HOM05D007064 ORTHO05D008772 8.5e-110 401.4 280 73.2
Psat2g189080 Pisum sativum HOM05D007064 ORTHO05D008772 7.2e-109 398.3 344 64.8
Pp3c23_10770 Physcomitrium patens HOM05D007064 ORTHO05D008772 3.1e-104 382.9 428 47.9
CARHR196350 Cardamine hirsuta HOM05D007064 ORTHO05D008772 5.0e-102 375.6 292 68.5
Glyma.01G233100 Glycine max HOM05D007064 ORTHO05D008772 4.0e-99 365.9 321 61.7
Oeu038089.3 Olea europaea HOM05D007064 ORTHO05D008772 3.4e-98 362.8 394 53.3
Mapoly0096s0061 Marchantia polymorpha HOM05D007064 ORTHO05D008772 1.7e-97 360.5 421 45.6
AagrBONN_evm.TU.Sc2ySwM_344.2887 Anthoceros agrestis HOM05D007064 ORTHO05D008772 1.1e-69 268.1 352 44.9
SMO343G0012 Selaginella moellendorffii HOM05D007064 ORTHO05D008772 1.1e-56 224.9 397 37.3
Cpa.g.sc43.97 Carica papaya HOM05D007064 ORTHO05D008772 7.6e-50 202.2 143 73.4
CBR_g8898 Chara braunii HOM05D007064 ORTHO05D008772 4.0e-43 179.9 126 65.1
Psat0s4094g0040 Pisum sativum HOM05D007064 ORTHO05D008772 5.8e-42 176.0 113 72.6
CBR_g8900 Chara braunii HOM05D007064 ORTHO05D000002 3.3e-37 160.2 210 43.3
Cpa.g.sc43.98 Carica papaya HOM05D007064 ORTHO05D008772 2.7e-31 140.6 72 90.3
Oeu043948.1 Olea europaea HOM05D007064 ORTHO05D008772 3.1e-27 127.1 83 77.1
Lj1A1033G66 Lonicera japonica HOM05D007064 ORTHO05D008772 8.7e-22 109.0 55 89.1
TPR.G40530 Trifolium pratense HOM05D007064 ORTHO05D008772 2.0e-18 97.8 55 76.4
HanXRQChr01g0005821 Helianthus annuus HOM05D007064 ORTHO05D008772 2.9e-17 94.0 70 60.0
PRCOL_00004348 Prasinoderma coloniale HOM05D007064 ORTHO05D008772 1.4e-11 75.1 252 27.4
CBR_g6359 Chara braunii HOM05D007064 ORTHO05D008772 8.5e-09 65.9 96 40.6
MBI13_g34060_MAGBIO Magnolia biondii HOM05D002406 ORTHO05D007964 2.5e-08 64.3 289 27.3
Pp3c10_6850 Physcomitrium patens HOM05D002406 ORTHO05D006947 4.2e-08 63.5 357 24.9
Mapoly0001s0031 Marchantia polymorpha HOM05D002406 ORTHO05D006947 5.5e-08 63.2 393 23.9
CDE09G1163 Ceratophyllum demersum HOM05D002406 ORTHO05D007964 2.1e-07 61.2 286 25.2
Glyma.02G100000 Glycine max HOM05D002406 ORTHO05D007964 2.1e-07 61.2 294 25.5
Sc04g0006710 Simmondsia chinensis HOM05D002406 ORTHO05D007964 6.1e-07 59.7 332 25.0
SGA_v2.0_scaffold14G06823 Striga asiatica HOM05D002406 ORTHO05D007964 7.9e-07 59.3 292 27.1
Duzib251G0875 Durio zibethinus HOM05D002406 ORTHO05D007964 1.0e-06 58.9 299 24.7
Glyma.01G087900 Glycine max HOM05D002406 ORTHO05D007964 1.8e-06 58.2 290 24.5
vmacro06524 Vaccinium macrocarpon HOM05D007064 ORTHO05D008772 3.0e-06 57.4 37 70.3
CiPaw.15G003700 Carya illinoinensis HOM05D002406 ORTHO05D007964 5.1e-06 56.6 286 24.5
COL.COLO4_07869 Corchorus olitorius HOM05D002406 ORTHO05D007964 6.7e-06 56.2 269 25.7
MCO05G602 Micromonas commoda HOM05D007064 ORTHO05D008772 6.7e-06 56.2 189 27.0
Ciclev10031094m.g Citrus clementina HOM05D002406 ORTHO05D007964 8.8e-06 55.8 304 25.0
CsaV3_5G025330 Cucumis sativus L. HOM05D002406 ORTHO05D007964 8.8e-06 55.8 260 25.0
Nn4g23734 Nelumbo nucifera HOM05D002406 ORTHO05D007964 8.8e-06 55.8 315 25.1
TAR371G0458 Trochodendron aralioides HOM05D002406 ORTHO05D007964 8.8e-06 55.8 268 25.7


User provided reference genes

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