Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016015 Carpinus fangiana HOM05D004006 ORTHO05D004585 2.2e-117 425.6 209 100.0
Haze_00445 Corylus avellana HOM05D004006 ORTHO05D004585 1.8e-95 352.8 214 87.4
CiPaw.06G030700 Carya illinoinensis HOM05D004006 ORTHO05D004585 2.9e-69 265.8 224 66.5
Thecc.08G124900 Theobroma cacao HOM05D004006 ORTHO05D004585 1.0e-66 257.3 216 64.8
Duzib093G0488 Durio zibethinus HOM05D004006 ORTHO05D004585 4.3e-65 251.9 215 65.1
Manes.18G077000 Manihot esculenta HOM05D004006 ORTHO05D004585 1.2e-64 250.4 219 63.5
Duzib116G0782 Durio zibethinus HOM05D004006 ORTHO05D004585 2.4e-60 236.1 213 60.6
Nn5g28281 Nelumbo nucifera HOM05D004006 ORTHO05D004585 5.1e-58 228.4 214 59.8
TAR628G0258 Trochodendron aralioides HOM05D004006 ORTHO05D004585 1.9e-57 226.5 209 61.2
GSVIVG01008871001 Vitis vinifera HOM05D004006 ORTHO05D004585 7.3e-57 224.6 191 64.4
FAN24G3177 Fragaria x ananassa HOM05D004006 ORTHO05D004585 2.1e-56 223.0 216 59.7
MD15G1349700 Malus domestica HOM05D004006 ORTHO05D004585 2.8e-56 222.6 229 56.8
Potri.002G083900 Populus trichocarpa HOM05D004006 ORTHO05D004585 6.2e-56 221.5 221 58.4
Prupe.1G498100 Prunus persica HOM05D004006 ORTHO05D004585 8.1e-56 221.1 226 58.8
COL.COLO4_35922 Corchorus olitorius HOM05D004006 ORTHO05D004585 2.3e-55 219.5 219 58.9
FvH4_2g26860 Fragaria vesca HOM05D004006 ORTHO05D004585 2.3e-55 219.5 217 58.1
Nn1g08787 Nelumbo nucifera HOM05D004006 ORTHO05D004585 4.0e-55 218.8 215 60.0
FAN27G3464 Fragaria x ananassa HOM05D004006 ORTHO05D004585 6.8e-55 218.0 216 58.8
RcHm_v2.0_Chr6g0295711 Rosa chinensis HOM05D004006 ORTHO05D004585 1.5e-54 216.9 216 57.9
FAN20G2831 Fragaria x ananassa HOM05D004006 ORTHO05D004585 2.0e-54 216.5 212 59.4
Eucgr.F04353 Eucalyptus grandis HOM05D004006 ORTHO05D004585 5.8e-54 214.9 241 54.8
Gohir.D01G180600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 9.9e-54 214.2 218 58.7
Gorai.002G222000 Gossypium raimondii HOM05D004006 ORTHO05D004585 9.9e-54 214.2 218 58.7
Potri.005G177600 Populus trichocarpa HOM05D004006 ORTHO05D004585 4.9e-53 211.8 216 57.9
PGR044G2543 Punica granatum HOM05D004006 ORTHO05D004585 4.9e-53 211.8 239 55.6
Dinv27317 Davidia involucrata HOM05D004006 ORTHO05D004585 8.3e-53 211.1 221 57.9
Phvul.009G124900 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 1.1e-52 210.7 215 57.7
Glyma.04G249900 Glycine max HOM05D004006 ORTHO05D004585 2.4e-52 209.5 214 60.7
ClCG08G005630 Citrullus lanatus HOM05D004006 ORTHO05D004585 3.2e-52 209.1 205 60.0
Gohir.A01G188900 Gossypium hirsutum HOM05D004006 ORTHO05D004585 3.2e-52 209.1 212 58.5
Sed0014468 Sechium edule HOM05D004006 ORTHO05D004585 9.2e-52 207.6 211 58.8
MD08G1163000 Malus domestica HOM05D004006 ORTHO05D004585 2.7e-51 206.1 226 54.9
CsaV3_6G034510 Cucumis sativus L. HOM05D004006 ORTHO05D004585 6.0e-51 204.9 211 57.8
CSS0019596 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 7.8e-51 204.5 216 54.6
Duzib041G0805 Durio zibethinus HOM05D004006 ORTHO05D004585 1.7e-50 203.4 190 61.1
Glyma.06G113000 Glycine max HOM05D004006 ORTHO05D004585 2.3e-50 203.0 214 56.1
Manes.02G162900 Manihot esculenta HOM05D004006 ORTHO05D004585 2.3e-50 203.0 220 55.9
MELO3C010605.2 Cucumis melo HOM05D004006 ORTHO05D004585 3.0e-50 202.6 211 57.3
TAR376G1087 Trochodendron aralioides HOM05D004006 ORTHO05D004585 6.6e-50 201.4 207 58.0
Gorai.005G089800 Gossypium raimondii HOM05D004006 ORTHO05D004585 1.1e-49 200.7 222 55.4
VMungo1309G2318 Vigna mungo HOM05D004006 ORTHO05D004585 2.5e-49 199.5 210 57.1
Lj1g0016270 Lotus japonicus HOM05D004006 ORTHO05D004585 2.8e-48 196.1 220 52.7
Gohir.D02G080400 Gossypium hirsutum HOM05D004006 ORTHO05D004585 4.7e-48 195.3 222 53.6
Cc10_g11860 Coffea canephora HOM05D004006 ORTHO05D004585 6.2e-48 194.9 219 51.1
Gohir.A02G073100 Gossypium hirsutum HOM05D004006 ORTHO05D004585 8.1e-48 194.5 223 54.7
TWI36G0058 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 5.2e-47 191.8 229 54.1
TWI56G0850 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 8.9e-47 191.0 220 53.2
CANSAT25G0779 Cannabis sativa HOM05D004006 ORTHO05D004585 2.0e-46 189.9 249 47.8
Aqoxy6G00215 Aquilegia oxysepala HOM05D004006 ORTHO05D004585 2.6e-46 189.5 226 50.9
Lj7P340T24 Lonicera japonica HOM05D004006 ORTHO05D004585 2.2e-45 186.4 198 54.0
THA.LOC104800196 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 3.8e-45 185.7 217 53.5
Ca_16556_v3 Cicer arietinum L. HOM05D004006 ORTHO05D004585 4.9e-45 185.3 233 54.1
TPR.G21067 Trifolium pratense HOM05D004006 ORTHO05D004585 4.9e-45 185.3 234 52.1
Gorai.009G245700 Gossypium raimondii HOM05D004006 ORTHO05D004585 6.4e-45 184.9 216 54.6
Medtr3g088010 Medicago truncatula HOM05D004006 ORTHO05D004585 1.1e-44 184.1 225 54.7
Gohir.A05G235000 Gossypium hirsutum HOM05D004006 ORTHO05D004585 4.2e-44 182.2 216 53.7
Gohir.D05G237300 Gossypium hirsutum HOM05D004006 ORTHO05D004585 4.2e-44 182.2 216 54.2
Ciclev10002301m.g Citrus clementina HOM05D004006 ORTHO05D004585 5.4e-44 181.8 237 51.1
Hma1.2p1_0186F.1_g081800 Hydrangea macrophylla HOM05D004006 ORTHO05D004585 7.1e-44 181.4 221 52.9
CSS0040709 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 7.8e-43 177.9 219 51.6
Dinv07222 Davidia involucrata HOM05D004006 ORTHO05D004585 7.8e-43 177.9 157 65.0
MBI16_g07656_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 1.0e-42 177.6 193 56.0
MSTRG.22410 Avicennia marina HOM05D004006 ORTHO05D004585 3.9e-42 175.6 210 46.7
vmacro00834 Vaccinium macrocarpon HOM05D004006 ORTHO05D004585 6.6e-42 174.9 212 54.2
Thhalv10008805m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 8.7e-42 174.5 205 50.7
Peaxi162Scf00018g00027 Petunia axillaris HOM05D004006 ORTHO05D004585 8.7e-42 174.5 227 47.6
CARHR022190 Cardamine hirsuta HOM05D004006 ORTHO05D004585 1.1e-41 174.1 206 50.0
arahy.Tifrunner.gnm1.ann1.CFE04G Arachis hypogaea HOM05D004006 ORTHO05D004585 4.3e-41 172.2 220 48.6
AL1G35020 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 5.6e-41 171.8 209 49.3
arahy.Tifrunner.gnm1.ann1.J26PKP Arachis hypogaea HOM05D004006 ORTHO05D004585 5.6e-41 171.8 217 49.3
CDE02G3357 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 9.6e-41 171.0 212 48.6
Atru.chr13.1448 Acer truncatum HOM05D004006 ORTHO05D004585 1.3e-40 170.6 221 49.3
Atru.chr13.1472 Acer truncatum HOM05D004006 ORTHO05D004585 1.3e-40 170.6 221 49.3
Rhsim06G0103600 Rhododendron simsii HOM05D004006 ORTHO05D004585 2.1e-40 169.9 216 49.5
Carub.0001s2127 Capsella rubella HOM05D004006 ORTHO05D004585 2.8e-40 169.5 210 49.5
Psat5g087920 Pisum sativum HOM05D004006 ORTHO05D004585 3.6e-40 169.1 220 51.8
Lalb_Chr10g0101721 Lupinus albus HOM05D004006 ORTHO05D004585 6.2e-40 168.3 209 50.2
A08p28790 Brassica napus HOM05D004006 ORTHO05D004585 8.1e-40 167.9 205 48.3
BraA08t34808Z Brassica rapa HOM05D004006 ORTHO05D004585 8.1e-40 167.9 205 48.3
Sp1g19380 Schrenkiella parvula HOM05D004006 ORTHO05D004585 1.1e-39 167.5 203 50.2
AT1G21830 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 1.8e-39 166.8 210 48.1
MSTRG.1442 Avicennia marina HOM05D004006 ORTHO05D004585 1.8e-39 166.8 199 48.2
Lalb_Chr23g0271011 Lupinus albus HOM05D004006 ORTHO05D004585 1.8e-39 166.8 212 47.2
THA.LOC104813655 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.8e-39 166.8 219 52.1
BcaC07g39124 Brassica carinata HOM05D004006 ORTHO05D004585 5.3e-39 165.2 205 47.8
C08p21130 Brassica napus HOM05D004006 ORTHO05D004585 5.3e-39 165.2 205 47.8
BolC8t49750H Brassica oleracea HOM05D004006 ORTHO05D004585 5.3e-39 165.2 205 47.8
Glyma.13G079800 Glycine max HOM05D004006 ORTHO05D004585 6.9e-39 164.9 212 49.5
RhsimUnG0092700 Rhododendron simsii HOM05D004006 ORTHO05D004585 6.9e-39 164.9 210 49.0
Lalb_Chr08g0241451 Lupinus albus HOM05D004006 ORTHO05D004585 1.5e-38 163.7 218 48.6
Oeu050916.1 Olea europaea HOM05D004006 ORTHO05D004585 3.4e-38 162.5 211 44.1
Oeu026152.1 Olea europaea HOM05D004006 ORTHO05D004585 9.9e-38 161.0 193 48.7
Oeu050917.2 Olea europaea HOM05D004006 ORTHO05D004585 9.9e-38 161.0 211 43.6
Oeu047951.1 Olea europaea HOM05D004006 ORTHO05D004585 1.3e-37 160.6 198 48.0
BcaB03g14254 Brassica carinata HOM05D004006 ORTHO05D004585 1.7e-37 160.2 204 46.1
Actinidia21321 Actinidia chinensis HOM05D004006 ORTHO05D004585 2.9e-37 159.5 215 48.8
PGSC0003DMG400027788 Solanum tuberosum HOM05D004006 ORTHO05D004585 3.8e-37 159.1 221 46.2
BcaC06g34904 Brassica carinata HOM05D004006 ORTHO05D004585 1.1e-36 157.5 206 46.6
C07p21950 Brassica napus HOM05D004006 ORTHO05D004585 1.1e-36 157.5 206 46.6
BolC7t42725H Brassica oleracea HOM05D004006 ORTHO05D004585 1.1e-36 157.5 206 46.6
Migut.C01125 Erythranthe guttata HOM05D004006 ORTHO05D004585 1.9e-36 156.8 207 45.9
A07p14920 Brassica napus HOM05D004006 ORTHO05D004585 3.2e-36 156.0 206 46.1
BraA07t29235Z Brassica rapa HOM05D004006 ORTHO05D004585 3.2e-36 156.0 206 46.1
BraA06t24881Z Brassica rapa HOM05D004006 ORTHO05D004585 5.4e-36 155.2 208 48.1
A06p17910 Brassica napus HOM05D004006 ORTHO05D004585 7.1e-36 154.8 208 47.6
SGA_v2.0_scaffold52G18967 Striga asiatica HOM05D004006 ORTHO05D004585 7.1e-36 154.8 218 45.0
BcaB07g32181 Brassica carinata HOM05D004006 ORTHO05D004585 1.6e-35 153.7 208 47.1
BcaC05g26103 Brassica carinata HOM05D004006 ORTHO05D004585 1.6e-35 153.7 208 47.1
C05p20810 Brassica napus HOM05D004006 ORTHO05D004585 1.6e-35 153.7 208 47.1
BcaB07g32179 Brassica carinata HOM05D004006 ORTHO05D004585 2.7e-35 152.9 204 45.6
BolC5t30780H Brassica oleracea HOM05D004006 ORTHO05D004585 4.6e-35 152.1 208 46.6
Actinidia29465 Actinidia chinensis HOM05D004006 ORTHO05D004585 1.0e-34 151.0 210 46.7
Nitab4.5_0016080g0010 Nicotiana tabacum HOM05D004006 ORTHO05D004585 1.0e-34 151.0 224 47.3
Glyma.14G150000 Glycine max HOM05D004006 ORTHO05D004585 1.3e-34 150.6 198 51.0
Hund17292 Selenicereus undatus HOM05D004006 ORTHO05D004585 1.3e-34 150.6 232 44.4
Solyc11g013450.2 Solanum lycopersicum HOM05D004006 ORTHO05D004585 1.3e-34 150.6 227 44.5
Actinidia03470 Actinidia chinensis HOM05D004006 ORTHO05D004585 2.3e-34 149.8 178 50.6
CDE08G0380 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 2.3e-34 149.8 194 49.0
MBI09_g12159_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 8.7e-34 147.9 199 46.7
PSO528G0204 Papaver somniferum HOM05D004006 ORTHO05D004585 1.1e-33 147.5 256 42.2
BcaB03g11881 Brassica carinata HOM05D004006 ORTHO05D004585 2.5e-33 146.4 213 45.1
Nitab4.5_0000051g0220 Nicotiana tabacum HOM05D004006 ORTHO05D004585 7.3e-33 144.8 226 45.6
EL10Ac1g01007 Beta vulgaris HOM05D004006 ORTHO05D004585 1.6e-32 143.7 230 46.1
PSO170G2295 Papaver somniferum HOM05D004006 ORTHO05D004585 2.1e-32 143.3 263 41.8
Oeu059434.1 Olea europaea HOM05D004006 ORTHO05D004585 2.8e-32 142.9 200 44.0
ATR0584G004 Amborella trichopoda HOM05D004006 ORTHO05D004585 1.1e-31 141.0 201 44.8
MSTRG.25384 Avicennia marina HOM05D004006 ORTHO05D004585 5.8e-30 135.2 205 43.9
SalBow6G7056 Salvia bowleyana HOM05D004006 ORTHO05D004585 7.6e-30 134.8 186 46.2
DCAR_014087 Daucus carota HOM05D004006 ORTHO05D004585 9.9e-30 134.4 198 46.5
Migut.N03284 Erythranthe guttata HOM05D004006 ORTHO05D004585 2.2e-29 133.3 185 43.8
HanXRQChr04g0125261 Helianthus annuus HOM05D004006 ORTHO05D004585 4.9e-29 132.1 203 41.9
Lsat_1_v5_gn_5_101481 Lactuca sativa HOM05D004006 ORTHO05D004585 6.7e-26 121.7 199 39.7
VMungo0647G0089 Vigna mungo HOM05D004006 ORTHO05D004585 8.7e-26 121.3 102 62.7
Sopen11g008440 Solanum pennellii HOM05D004006 ORTHO05D004585 1.5e-25 120.6 159 50.9
SalBow7G3581 Salvia bowleyana HOM05D004006 ORTHO05D004585 4.3e-25 119.0 194 41.2
SGA_v2.0_scaffold24G10460 Striga asiatica HOM05D004006 ORTHO05D004585 4.3e-25 119.0 189 40.7
SGA_v2.0_scaffold25G11123 Striga asiatica HOM05D004006 ORTHO05D004585 4.3e-25 119.0 179 39.1
Gorai.009G283200 Gossypium raimondii HOM05D004006 ORTHO05D004585 2.8e-24 116.3 175 45.1
Os04g0690500 Oryza sativa ssp. japonica HOM05D004006 ORTHO05D004585 3.7e-24 115.9 212 40.6
Sabra02G0065700 Salix brachista HOM05D004006 ORTHO05D004585 3.7e-24 115.9 102 60.8
HPP92_011945 Vanilla planifolia HOM05D004006 ORTHO05D004585 3.7e-24 115.9 198 37.9
Sabra05G0134100 Salix brachista HOM05D004006 ORTHO05D004585 6.2e-24 115.2 108 59.3
Cpa.g.sc64.85 Carica papaya HOM05D004006 ORTHO05D004585 8.1e-24 114.8 128 60.2
Gohir.D05G270600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 8.1e-24 114.8 175 44.6
THA.LOC104806821 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.8e-23 113.6 220 39.5
Hund26811 Selenicereus undatus HOM05D004006 ORTHO05D004585 4.0e-23 112.5 179 41.3
CDE06G0283 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 3.2e-20 102.8 190 39.5
Carub.0001s3524 Capsella rubella HOM05D004006 ORTHO05D004585 2.7e-19 99.8 206 35.0
Aa31LG7G5780 Aethionema arabicum HOM05D004006 ORTHO05D004585 4.6e-19 99.0 169 41.4
THA.LOC104817318 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 3.0e-18 96.3 224 36.2
CARHR035970 Cardamine hirsuta HOM05D004006 ORTHO05D004585 6.7e-18 95.1 212 35.8
AL1G52380 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 8.7e-18 94.7 210 34.3
CDE08G1629 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 3.3e-17 92.8 177 39.5
Sp1g33590 Schrenkiella parvula HOM05D004006 ORTHO05D004585 1.3e-16 90.9 207 32.4
Lj4C625T3 Lonicera japonica HOM05D004006 ORTHO05D004585 2.4e-15 86.7 70 62.9
HPP92_011964 Vanilla planifolia HOM05D004006 ORTHO05D004585 4.0e-15 85.9 153 37.3
PSO017G3194 Papaver somniferum HOM05D004006 ORTHO05D004585 1.2e-14 84.3 256 34.4
AT1G44608 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 4.5e-14 82.4 194 33.5
Thhalv10011817m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 1.3e-13 80.9 175 34.9
A10p07490 Brassica napus HOM05D004006 ORTHO05D004585 2.2e-13 80.1 177 35.0
BraSC36t46058Z Brassica rapa HOM05D004006 ORTHO05D004585 2.2e-13 80.1 177 35.0
AUR62014339 Chenopodium quinoa HOM05D004006 ORTHO05D004585 2.2e-13 80.1 133 45.1
Gohir.A05G268750 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.2e-13 80.1 114 50.0
BcaC08g42859 Brassica carinata HOM05D004006 ORTHO05D004585 2.9e-13 79.7 181 34.3
C06p00700 Brassica napus HOM05D004006 ORTHO05D004585 2.9e-13 79.7 181 34.3
BolC6t35208H Brassica oleracea HOM05D004006 ORTHO05D004585 3.8e-13 79.3 181 33.7
unitig_46.g18107 Utricularia gibba HOM05D004006 ORTHO05D004585 1.6e-11 73.9 174 33.9
Phvul.008G163001 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 4.6e-11 72.4 100 46.0
Aa31LG6G9320 Aethionema arabicum HOM05D004006 ORTHO05D004585 6.1e-11 72.0 189 34.4
VMungo0647G1885 Vigna mungo HOM05D004006 ORTHO05D004585 1.0e-10 71.2 99 44.4
CDE12G0877 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 2.0e-06 57.0 159 32.7
Zm00001eb076410 Zea mays HOM05D004006 ORTHO05D004585 5.9e-06 55.5 100 35.0


User provided reference genes

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