Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016002 Carpinus fangiana HOM05D005355 ORTHO05D006591 3.0e-186 655.2 377 100.0
Haze_00460 Corylus avellana HOM05D005355 ORTHO05D006591 1.9e-148 529.6 349 87.4
CiPaw.05G223300 Carya illinoinensis HOM05D005355 ORTHO05D006591 4.9e-128 461.8 373 77.2
CiPaw.06G029200 Carya illinoinensis HOM05D005355 ORTHO05D006591 2.4e-127 459.5 373 72.9
QL09p035410 Quercus lobata HOM05D005355 ORTHO05D006591 2.4e-111 406.4 381 69.0
Prupe.1G500200 Prunus persica HOM05D005355 ORTHO05D006591 6.0e-110 401.7 379 68.6
GSVIVG01008886001 Vitis vinifera HOM05D005355 ORTHO05D006591 1.1e-108 397.5 384 62.8
MD15G1351600 Malus domestica HOM05D005355 ORTHO05D006591 5.5e-103 378.6 426 55.4
Thecc.08G123400 Theobroma cacao HOM05D005355 ORTHO05D006591 1.2e-102 377.5 400 65.0
Manes.18G076200 Manihot esculenta HOM05D005355 ORTHO05D006591 2.1e-102 376.7 384 63.5
Glyma.04G250500 Glycine max HOM05D005355 ORTHO05D006591 1.1e-100 370.9 380 63.9
Potri.002G085000 Populus trichocarpa HOM05D005355 ORTHO05D006591 1.9e-100 370.2 385 62.9
CSS0023513 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 8.1e-99 364.8 384 58.6
MD00G1157400 Malus domestica HOM05D005355 ORTHO05D006591 5.3e-98 362.1 426 59.2
VMungo1309G2754 Vigna mungo HOM05D005355 ORTHO05D006591 4.5e-97 359.0 380 59.2
Duzib093G2154 Durio zibethinus HOM05D005355 ORTHO05D006591 1.3e-96 357.5 384 62.8
Phvul.009G124200 Phaseolus vulgaris HOM05D005355 ORTHO05D006591 1.7e-96 357.1 380 56.6
Ciclev10000938m.g Citrus clementina HOM05D005355 ORTHO05D006591 6.5e-96 355.1 383 56.7
Glyma.06G112300 Glycine max HOM05D005355 ORTHO05D006591 1.2e-94 350.9 380 61.1
CSS0006134 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 1.0e-93 347.8 384 56.8
Sabra02G0066400 Salix brachista HOM05D005355 ORTHO05D006591 3.0e-93 346.3 407 59.2
Duzib116G0422 Durio zibethinus HOM05D005355 ORTHO05D006591 2.5e-92 343.2 396 61.1
PGR044G2411 Punica granatum HOM05D005355 ORTHO05D006591 4.1e-90 335.9 385 59.0
Gorai.010G049600 Gossypium raimondii HOM05D005355 ORTHO05D006591 6.9e-90 335.1 395 61.0
Lj1g0013612 Lotus japonicus HOM05D005355 ORTHO05D006591 3.4e-89 332.8 382 60.5
TWI56G0611 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 1.0e-88 331.3 382 59.7
Gohir.A06G043600 Gossypium hirsutum HOM05D005355 ORTHO05D006591 8.5e-88 328.2 397 60.2
Medtr3g072480 Medicago truncatula HOM05D005355 ORTHO05D006591 3.2e-87 326.2 382 56.5
Eucgr.F04357 Eucalyptus grandis HOM05D005355 ORTHO05D006591 4.2e-87 325.9 385 57.4
CANSAT25G1794 Cannabis sativa HOM05D005355 ORTHO05D006591 7.2e-87 325.1 392 54.1
RhsimUnG0093800 Rhododendron simsii HOM05D005355 ORTHO05D006591 1.6e-86 323.9 401 55.6
FAN27G0453 Fragaria x ananassa HOM05D005355 ORTHO05D006591 6.1e-86 322.0 382 57.1
TWI12G0790 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 6.1e-86 322.0 382 53.9
Dinv27329 Davidia involucrata HOM05D005355 ORTHO05D006591 1.0e-85 321.2 370 55.9
Gohir.D06G044400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 1.0e-85 321.2 395 60.0
Sabra05G0133000 Salix brachista HOM05D005355 ORTHO05D006591 1.0e-85 321.2 476 48.1
TAR625G0673 Trochodendron aralioides HOM05D005355 ORTHO05D006591 1.8e-85 320.5 376 57.7
Ca_15194_v3 Cicer arietinum L. HOM05D005355 ORTHO05D006591 2.3e-85 320.1 381 55.1
RcHm_v2.0_Chr6g0295601 Rosa chinensis HOM05D005355 ORTHO05D006591 3.7e-83 312.8 382 57.1
Nn5g28219 Nelumbo nucifera HOM05D005355 ORTHO05D006591 6.3e-83 312.0 384 52.9
ClCG08G005570 Citrullus lanatus HOM05D005355 ORTHO05D006591 1.4e-82 310.8 383 53.3
CsaV3_2G014020 Cucumis sativus L. HOM05D005355 ORTHO05D006591 7.7e-81 305.1 386 53.6
Gohir.D05G236700 Gossypium hirsutum HOM05D005355 ORTHO05D006591 7.7e-81 305.1 391 58.3
Gorai.009G245100 Gossypium raimondii HOM05D005355 ORTHO05D006591 1.3e-80 304.3 392 58.2
PSO170G1761 Papaver somniferum HOM05D005355 ORTHO05D006591 1.7e-80 303.9 380 48.9
Gohir.A05G234400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 3.8e-80 302.8 395 56.7
Hund27026 Selenicereus undatus HOM05D005355 ORTHO05D006591 3.8e-80 302.8 381 50.4
FvH4_2g26711 Fragaria vesca HOM05D005355 ORTHO05D006591 6.5e-80 302.0 378 54.0
PSO528G0270 Papaver somniferum HOM05D005355 ORTHO05D006591 3.2e-79 299.7 380 48.9
FAN24G2565 Fragaria x ananassa HOM05D005355 ORTHO05D006591 4.2e-79 299.3 382 53.4
FAN20G1264 Fragaria x ananassa HOM05D005355 ORTHO05D006591 7.2e-79 298.5 382 53.1
Sc01g0001210 Simmondsia chinensis HOM05D005355 ORTHO05D006591 7.2e-79 298.5 380 48.9
TPR.G24014 Trifolium pratense HOM05D005355 ORTHO05D006591 9.4e-79 298.1 379 54.6
Psat5g132440 Pisum sativum HOM05D005355 ORTHO05D006591 1.6e-78 297.4 401 52.6
Lj4A622G14 Lonicera japonica HOM05D005355 ORTHO05D006591 2.7e-78 296.6 381 52.5
arahy.Tifrunner.gnm1.ann1.Y2U2DK Arachis hypogaea HOM05D005355 ORTHO05D006591 3.6e-78 296.2 383 52.7
Potri.005G176400 Populus trichocarpa HOM05D005355 ORTHO05D006591 3.6e-78 296.2 460 49.6
arahy.Tifrunner.gnm1.ann1.SCI4MN Arachis hypogaea HOM05D005355 ORTHO05D006591 1.0e-77 294.7 383 50.9
MBI06_g20714_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 5.7e-76 288.9 396 48.2
EL10Ac1g01045 Beta vulgaris HOM05D005355 ORTHO05D006591 6.9e-74 282.0 377 54.9
THA.LOC104817273 Tarenaya hassleriana HOM05D005355 ORTHO05D006591 5.9e-73 278.9 389 51.4
Lalb_Chr08g0241491 Lupinus albus HOM05D005355 ORTHO05D006591 8.5e-72 275.0 380 54.5
AUR62019052 Chenopodium quinoa HOM05D005355 ORTHO05D006591 1.4e-71 274.2 379 53.8
FAN15G2971 Fragaria x ananassa HOM05D005355 ORTHO05D006591 2.5e-71 273.5 406 51.5
MELO3C010600.2 Cucumis melo HOM05D005355 ORTHO05D006591 6.1e-70 268.9 368 50.8
Thhalv10029139m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 8.8e-69 265.0 382 46.1
Aa31LG9G14260 Aethionema arabicum HOM05D005355 ORTHO05D006591 3.1e-66 256.5 385 51.9
Cpa.g.sc36.50 Carica papaya HOM05D005355 ORTHO05D006591 4.1e-66 256.1 368 46.7
MSTRG.326 Avicennia marina HOM05D005355 ORTHO05D006591 1.9e-63 247.3 379 45.9
Thhalv10011453m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 1.9e-63 247.3 376 46.5
Aqoxy6G00187 Aquilegia oxysepala HOM05D005355 ORTHO05D006591 4.2e-63 246.1 378 44.2
CAN.G127.21 Capsicum annuum HOM05D005355 ORTHO05D006591 2.7e-62 243.4 389 43.4
Oeu062052.1 Olea europaea HOM05D005355 ORTHO05D006591 4.7e-62 242.7 385 49.4
Sp1g33640 Schrenkiella parvula HOM05D005355 ORTHO05D006591 1.0e-61 241.5 379 48.3
Cc00_g04310 Coffea canephora HOM05D005355 ORTHO05D006591 2.3e-61 240.4 381 43.3
vmacro00824 Vaccinium macrocarpon HOM05D005355 ORTHO05D006591 2.3e-61 240.4 514 43.2
MBI15_g20159_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 3.0e-61 240.0 383 43.1
AL1G52440 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 4.4e-60 236.1 380 43.2
MBI15_g24178_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 4.4e-60 236.1 390 48.2
AT4G08310 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 9.7e-60 235.0 386 46.6
Lsat_1_v5_gn_5_101461 Lactuca sativa HOM05D005355 ORTHO05D006591 1.3e-59 234.6 375 46.1
ECA238G0419 Erigeron canadensis HOM05D005355 ORTHO05D006591 1.7e-59 234.2 377 43.2
COL.COLO4_35946 Corchorus olitorius HOM05D005355 ORTHO05D006591 2.2e-59 233.8 381 43.6
Carub.0006s2687 Capsella rubella HOM05D005355 ORTHO05D006591 5.3e-58 229.2 398 41.7
Sp6g09690 Schrenkiella parvula HOM05D005355 ORTHO05D006591 7.0e-58 228.8 384 44.5
Sopen11g007660 Solanum pennellii HOM05D005355 ORTHO05D006591 1.2e-57 228.0 390 44.4
Solyc11g012920.3 Solanum lycopersicum HOM05D005355 ORTHO05D006591 5.9e-57 225.7 390 45.1
CARHR259390 Cardamine hirsuta HOM05D005355 ORTHO05D006591 2.9e-56 223.4 386 47.2
SGA_v2.0_scaffold122G33176 Striga asiatica HOM05D005355 ORTHO05D006591 1.9e-55 220.7 377 43.8
CDE06G1640 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 6.1e-54 215.7 370 42.2
AL6G42080 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 1.4e-53 214.5 384 44.5
BcaB07g33934 Brassica carinata HOM05D005355 ORTHO05D006591 4.0e-53 213.0 381 43.3
AT1G44780 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 1.5e-52 211.1 376 41.0
Os11g0544600 Oryza sativa ssp. japonica HOM05D005355 ORTHO05D006591 1.5e-52 211.1 370 40.8
C06p00770 Brassica napus HOM05D005355 ORTHO05D006591 3.4e-52 209.9 375 40.0
Atru.chr13.1433 Acer truncatum HOM05D005355 ORTHO05D006591 9.8e-52 208.4 228 57.9
A10p07350 Brassica napus HOM05D005355 ORTHO05D006591 1.3e-51 208.0 378 42.6
SHI29459 Sapria himalayana HOM05D005355 ORTHO05D006591 3.7e-51 206.5 374 40.1
BraSC36t46079Z Brassica rapa HOM05D005355 ORTHO05D006591 4.8e-51 206.1 378 42.3
unitig_52.g17510 Utricularia gibba HOM05D005355 ORTHO05D006467 2.4e-50 203.8 411 41.8
HanXRQChr04g0109451 Helianthus annuus HOM05D005355 ORTHO05D006591 1.2e-49 201.4 371 39.4
BolC6t35219H Brassica oleracea HOM05D005355 ORTHO05D006591 3.5e-49 199.9 373 39.4
Migut.F01876 Erythranthe guttata HOM05D005355 ORTHO05D006591 3.5e-49 199.9 388 42.5
ATR0104G007 Amborella trichopoda HOM05D005355 ORTHO05D006591 4.5e-49 199.5 401 38.9
Zm00001eb113700 Zea mays HOM05D005355 ORTHO05D006591 5.9e-49 199.1 379 39.8
DCAR_011614 Daucus carota HOM05D005355 ORTHO05D006591 1.5e-47 194.5 283 46.6
AUR62027892 Chenopodium quinoa HOM05D005355 ORTHO05D006591 1.9e-47 194.1 359 46.0
Sed0010827 Sechium edule HOM05D005355 ORTHO05D006591 2.5e-47 193.7 292 53.1
BcaC08g42867 Brassica carinata HOM05D005355 ORTHO05D006591 4.7e-46 189.5 385 37.9
Nitab4.5_0001803g0130 Nicotiana tabacum HOM05D005355 ORTHO05D006591 7.5e-44 182.2 340 41.8
CARHR036040 Cardamine hirsuta HOM05D005355 ORTHO05D006591 5.9e-41 172.6 375 36.5
Atru.chr13.1434 Acer truncatum HOM05D005355 ORTHO05D006591 1.3e-40 171.4 156 61.5
arahy.Tifrunner.gnm1.ann1.V8LFJN Arachis hypogaea HOM05D005355 ORTHO05D006591 1.4e-34 151.4 301 40.9
CDE06G1231 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 5.6e-31 139.4 210 43.3
MBI15_g20157_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D010248 6.8e-29 132.5 257 39.3
AagrBONN_evm.TU.Sc2ySwM_362.1810 Anthoceros agrestis HOM05D005355 ORTHO05D006591 1.2e-25 121.7 432 28.9
SMO230G0121 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 1.5e-23 114.8 416 28.1
SMO367G1068 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 1.2e-22 111.7 385 29.4
Mapoly0004s0202 Marchantia polymorpha HOM05D005355 ORTHO05D006591 2.1e-22 110.9 402 27.6
Cpa.g.sc36.52 Carica papaya HOM05D005355 ORTHO05D006591 8.1e-22 109.0 163 42.9
MBI15_g19197_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 3.1e-21 107.1 76 69.7
HPP92_011157 Vanilla planifolia HOM05D005355 ORTHO05D006591 1.5e-20 104.8 205 40.0
CDE06G0823 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 2.2e-19 100.9 95 61.1
Pp3c21_16190 Physcomitrium patens HOM05D005355 ORTHO05D006591 1.9e-18 97.8 385 31.7
Nitab4.5_0001273g0020 Nicotiana tabacum HOM05D005355 ORTHO05D006591 1.6e-17 94.7 73 69.9
Nn8g40262 Nelumbo nucifera HOM05D005355 ORTHO05D006591 1.6e-14 84.7 50 80.0
Peaxi162Scf00914g00033 Petunia axillaris HOM05D005355 ORTHO05D006591 3.6e-14 83.6 201 37.3
Carub.0001s3530 Capsella rubella HOM05D005355 ORTHO05D006591 8.9e-13 79.0 111 45.0
SMO230G0058 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 2.6e-12 77.4 84 53.6
DCAR_011615 Daucus carota HOM05D005355 ORTHO05D006591 4.4e-12 76.6 55 65.5
SGA_v2.0_scaffold340G49302 Striga asiatica HOM05D005355 ORTHO05D006591 7.6e-12 75.9 133 38.3
Nitab4.5_0001273g0010 Nicotiana tabacum HOM05D005355 ORTHO05D006591 3.2e-10 70.5 48 68.8
Nitab4.5_0001803g0110 Nicotiana tabacum HOM05D005355 ORTHO05D006591 3.2e-10 70.5 50 66.0
SEGI_25872 Sequoiadendron giganteum HOM05D005355 ORTHO05D006591 7.1e-10 69.3 369 31.7
CBR_g29492 Chara braunii HOM05D005355 ORTHO05D006591 6.0e-09 66.2 60 48.3
MBI15_g42534_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 7.3e-07 59.3 48 56.2
arahy.Tifrunner.gnm1.ann1.F65TCR Arachis hypogaea HOM05D005355 ORTHO05D006591 6.2e-06 56.2 38 65.8


User provided reference genes

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