Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015971 Carpinus fangiana HOM05D005781 ORTHO05D006835 1.8e-235 818.9 434 100.0
Haze_00504 Corylus avellana HOM05D005781 ORTHO05D006835 8.8e-89 331.6 319 65.2
Haze_00507 Corylus avellana HOM05D005781 ORTHO05D165033 1.4e-70 271.2 294 62.6
PGR031G1812 Punica granatum HOM05D005781 ORTHO05D006835 3.2e-46 190.3 94 91.5
Cfa011814 Carpinus fangiana HOM05D005781 ORTHO05D006835 4.6e-45 186.4 105 86.7
CANSAT54G0055 Cannabis sativa HOM05D005781 ORTHO05D006835 1.0e-44 185.3 94 88.3
Thecc.01G232600 Theobroma cacao HOM05D005781 ORTHO05D006835 8.6e-44 182.2 100 83.0
CiPaw.06G025900 Carya illinoinensis HOM05D005781 ORTHO05D006835 5.6e-43 179.5 94 91.5
Manes.02G161400 Manihot esculenta HOM05D005781 ORTHO05D006835 7.3e-43 179.1 96 88.5
Eucgr.D02385 Eucalyptus grandis HOM05D005781 ORTHO05D006835 1.6e-42 177.9 95 87.4
COL.COLO4_33816 Corchorus olitorius HOM05D005781 ORTHO05D006835 3.6e-42 176.8 96 83.3
Duzib138G0305 Durio zibethinus HOM05D005781 ORTHO05D006835 4.7e-42 176.4 96 85.4
COL.COLO4_20773 Corchorus olitorius HOM05D005781 ORTHO05D006835 6.2e-42 176.0 96 83.3
Manes.01G244300 Manihot esculenta HOM05D005781 ORTHO05D006835 8.1e-42 175.6 96 85.4
Gohir.D07G208300 Gossypium hirsutum HOM05D005781 ORTHO05D006835 1.1e-41 175.3 96 84.4
MD04G1200700 Malus domestica HOM05D005781 ORTHO05D006835 1.1e-41 175.3 96 81.2
Gohir.A07G202100 Gossypium hirsutum HOM05D005781 ORTHO05D006835 1.4e-41 174.9 96 83.3
MD12G1213200 Malus domestica HOM05D005781 ORTHO05D006835 4.0e-41 173.3 96 79.2
Ciclev10023034m.g Citrus clementina HOM05D005781 ORTHO05D006835 6.8e-41 172.6 96 84.4
Gorai.001G235000 Gossypium raimondii HOM05D005781 ORTHO05D006835 6.8e-41 172.6 96 82.3
Prupe.6G320800 Prunus persica HOM05D005781 ORTHO05D006835 6.8e-41 172.6 94 83.0
THA.LOC104825391 Tarenaya hassleriana HOM05D005781 ORTHO05D006835 2.6e-40 170.6 98 78.6
Gohir.A08G193000 Gossypium hirsutum HOM05D005781 ORTHO05D006835 5.8e-40 169.5 95 78.9
Atru.chr1.3778 Acer truncatum HOM05D005781 ORTHO05D006835 2.9e-39 167.2 96 79.2
Gohir.D08G211000 Gossypium hirsutum HOM05D005781 ORTHO05D006835 2.9e-39 167.2 95 77.9
Gorai.004G223700 Gossypium raimondii HOM05D005781 ORTHO05D006835 2.9e-39 167.2 95 77.9
Potri.001G082000 Populus trichocarpa HOM05D005781 ORTHO05D006835 2.9e-39 167.2 96 82.3
Haze_11591 Corylus avellana HOM05D005781 ORTHO05D006835 1.1e-38 165.2 83 95.2
QL04p074672 Quercus lobata HOM05D005781 ORTHO05D006835 1.1e-38 165.2 93 83.9
TWI63G1301 Tripterygium wilfordii HOM05D005781 ORTHO05D006835 4.1e-38 163.3 96 79.2
Rhsim06G0009100 Rhododendron simsii HOM05D005781 ORTHO05D006835 1.2e-37 161.8 95 78.9
Sed0027756 Sechium edule HOM05D005781 ORTHO05D006835 1.6e-37 161.4 91 81.3
ClCG05G000700 Citrullus lanatus HOM05D005781 ORTHO05D006835 2.7e-37 160.6 91 81.3
Sed0023332 Sechium edule HOM05D005781 ORTHO05D006835 2.7e-37 160.6 91 80.2
Rhsim13G0061400 Rhododendron simsii HOM05D005781 ORTHO05D006835 1.3e-36 158.3 95 76.8
TWI38G0894 Tripterygium wilfordii HOM05D005781 ORTHO05D006835 1.3e-36 158.3 96 79.2
RcHm_v2.0_Chr3g0455721 Rosa chinensis HOM05D005781 ORTHO05D006835 3.9e-36 156.8 94 74.5
FAN05G5419 Fragaria x ananassa HOM05D006406 ORTHO05D007883 1.1e-35 155.2 114 65.8
Dinv12261 Davidia involucrata HOM05D005781 ORTHO05D006835 1.5e-35 154.8 94 75.5
Lj4g0019743 Lotus japonicus HOM05D005781 ORTHO05D006835 1.5e-35 154.8 94 75.5
Glyma.08G084500 Glycine max HOM05D005781 ORTHO05D006835 2.5e-35 154.1 94 74.5
FAN09G0731 Fragaria x ananassa HOM05D005781 ORTHO05D006835 3.3e-35 153.7 94 73.4
Ca_21653_v3 Cicer arietinum L. HOM05D005781 ORTHO05D006835 4.3e-35 153.3 94 72.3
Glyma.05G129800 Glycine max HOM05D005781 ORTHO05D006835 4.3e-35 153.3 94 73.4
FAN14G3705 Fragaria x ananassa HOM05D006406 ORTHO05D007883 7.3e-35 152.5 94 72.3
Atru.chr5.698 Acer truncatum HOM05D005781 ORTHO05D006835 1.2e-34 151.8 95 76.8
arahy.Tifrunner.gnm1.ann1.EVJW84 Arachis hypogaea HOM05D005781 ORTHO05D006835 1.2e-34 151.8 94 74.5
Lalb_Chr13g0300501 Lupinus albus HOM05D005781 ORTHO05D006835 1.6e-34 151.4 94 72.3
Lj4g0026259 Lotus japonicus HOM05D005781 ORTHO05D006835 2.1e-34 151.0 94 71.3
Cpa.g.c32851 Carica papaya HOM05D005781 ORTHO05D006835 4.7e-34 149.8 86 83.7
Hund27185 Selenicereus undatus HOM05D005781 ORTHO05D006835 6.2e-34 149.4 98 72.4
Lj3g0001466 Lotus japonicus HOM05D005781 ORTHO05D006835 1.8e-33 147.9 94 71.3
vmacro02893 Vaccinium macrocarpon HOM05D005781 ORTHO05D006835 1.5e-32 144.8 95 70.5
Cc05_g05310 Coffea canephora HOM05D005781 ORTHO05D006835 2.0e-32 144.4 93 68.8
Gorai.009G291400 Gossypium raimondii HOM05D005781 ORTHO05D006835 2.0e-32 144.4 86 77.9
Os01g0258600 Oryza sativa ssp. japonica HOM05D005781 ORTHO05D006835 2.6e-32 144.1 92 70.7
Psat4g033600 Pisum sativum HOM05D005781 ORTHO05D006835 2.6e-32 144.1 94 67.0
CsaV3_3G007920 Cucumis sativus L. HOM05D005781 ORTHO05D006835 4.4e-32 143.3 103 67.0
Sabra01G0058900 Salix brachista HOM05D005781 ORTHO05D006835 4.4e-32 143.3 86 79.1
Phvul.002G194100 Phaseolus vulgaris HOM05D005781 ORTHO05D006835 7.6e-32 142.5 94 69.1
Nn8g40131 Nelumbo nucifera HOM05D005781 ORTHO05D006835 1.3e-31 141.7 94 71.3
Aqoxy5G00270 Aquilegia oxysepala HOM05D005781 ORTHO05D006835 1.7e-31 141.4 92 70.7
Gohir.D05G278050 Gossypium hirsutum HOM05D005781 ORTHO05D006835 1.7e-31 141.4 86 76.7
Medtr4g115740 Medicago truncatula HOM05D005781 ORTHO05D006835 2.2e-31 141.0 97 64.9
Nn6g33491 Nelumbo nucifera HOM05D005781 ORTHO05D006835 2.9e-31 140.6 94 71.3
EL10Ac7g17336 Beta vulgaris HOM05D005781 ORTHO05D006835 8.4e-31 139.0 98 69.4
THA.LOC104825885 Tarenaya hassleriana HOM05D005781 ORTHO05D006835 8.4e-31 139.0 86 74.4
Ah.04g154640 Amaranthus hybridus HOM05D005781 ORTHO05D006835 1.4e-30 138.3 98 66.3
Zm00001eb109340 Zea mays HOM05D005781 ORTHO05D006835 1.4e-30 138.3 94 67.0
MELO3C006010.2 Cucumis melo HOM05D005781 ORTHO05D006835 1.9e-30 137.9 103 64.1
Oeu052918.1 Olea europaea HOM05D005781 ORTHO05D006835 5.4e-30 136.3 94 71.3
MBI09_g43998_MAGBIO Magnolia biondii HOM05D005781 ORTHO05D006835 7.1e-30 136.0 94 67.0
CSS0033648 Camellia sinensis var. sinensis HOM05D005781 ORTHO05D006835 2.7e-29 134.0 84 73.8
Sopen07g026470 Solanum pennellii HOM05D005781 ORTHO05D006835 2.7e-29 134.0 94 67.0
arahy.Tifrunner.gnm1.ann1.V38LZ0 Arachis hypogaea HOM05D005781 ORTHO05D006835 3.5e-29 133.7 130 53.8
DCAR_022248 Daucus carota HOM05D005781 ORTHO05D006835 3.5e-29 133.7 94 64.9
RcHm_v2.0_Chr1g0322091 Rosa chinensis HOM05D005781 ORTHO05D006835 3.5e-29 133.7 80 73.8
Sc01g0002510 Simmondsia chinensis HOM05D005781 ORTHO05D006835 3.5e-29 133.7 95 65.3
Dinv36923 Davidia involucrata HOM05D005781 ORTHO05D006835 4.6e-29 133.3 82 75.6
Gohir.A05G276166 Gossypium hirsutum HOM05D005781 ORTHO05D006835 4.6e-29 133.3 86 72.1
DCAR_003312 Daucus carota HOM05D005781 ORTHO05D006835 7.8e-29 132.5 94 62.8
vmacro12515 Vaccinium macrocarpon HOM05D005781 ORTHO05D006835 7.8e-29 132.5 86 70.9
CSS0000543 Camellia sinensis var. sinensis HOM05D005781 ORTHO05D006835 1.7e-28 131.3 84 72.6
Hma1.2p1_0841F.1_g227020 Hydrangea macrophylla HOM05D005781 ORTHO05D006835 8.7e-28 129.0 85 74.1
PGSC0003DMG400026192 Solanum tuberosum HOM05D005781 ORTHO05D006835 8.7e-28 129.0 94 62.8
ECA247G2075 Erigeron canadensis HOM05D005781 ORTHO05D006835 1.1e-27 128.6 95 63.2
CDE02G0151 Ceratophyllum demersum HOM05D005781 ORTHO05D006835 1.5e-27 128.3 94 63.8
Peaxi162Scf00007g01414 Petunia axillaris HOM05D005781 ORTHO05D006835 3.3e-27 127.1 84 67.9
Migut.H01206 Erythranthe guttata HOM05D005781 ORTHO05D006835 4.3e-27 126.7 95 66.3
Nitab4.5_0001134g0180 Nicotiana tabacum HOM05D005781 ORTHO05D006835 9.6e-27 125.6 92 63.0
Oeu034339.1 Olea europaea HOM05D005781 ORTHO05D006835 9.6e-27 125.6 94 66.0
TPR.G40143 Trifolium pratense HOM05D005781 ORTHO05D006835 2.1e-26 124.4 84 65.5
Os06g0184100 Oryza sativa ssp. japonica HOM05D005781 ORTHO05D006835 3.6e-26 123.6 84 67.9
Lsat_1_v5_gn_9_14361 Lactuca sativa HOM05D005781 ORTHO05D006835 1.8e-25 121.3 96 62.5
Medtr5g009535 Medicago truncatula HOM05D005781 ORTHO05D006835 1.2e-24 118.6 84 64.3
Nitab4.5_0003429g0070 Nicotiana tabacum HOM05D005781 ORTHO05D006835 2.0e-24 117.9 90 61.1
Thhalv10022933m.g Eutrema salsugineum HOM05D005781 ORTHO05D006835 9.9e-24 115.5 100 59.0
Nitab4.5_0008807g0010 Nicotiana tabacum HOM05D005781 ORTHO05D006835 9.9e-24 115.5 84 64.3
Rhsim06G0009300 Rhododendron simsii HOM05D005781 ORTHO05D006835 9.9e-24 115.5 73 75.3
BcaB07g31735 Brassica carinata HOM05D005781 ORTHO05D006835 2.9e-23 114.0 102 55.9
Atru.chr1.3777 Acer truncatum HOM05D005781 ORTHO05D006835 4.9e-23 113.2 86 68.6
Thhalv10015111m.g Eutrema salsugineum HOM05D005781 ORTHO05D006835 6.4e-23 112.8 98 56.1
unitig_0.g2200 Utricularia gibba HOM05D005781 ORTHO05D006835 1.4e-22 111.7 100 56.0
Aa31LG11G12650 Aethionema arabicum HOM05D005781 ORTHO05D006835 3.2e-22 110.5 101 56.4
Solyc07g052913.1 Solanum lycopersicum HOM05D005781 ORTHO05D006835 3.2e-22 110.5 86 61.6
Zm00001eb374690 Zea mays HOM05D005781 ORTHO05D006835 5.4e-22 109.8 67 70.1
BcaB01g04964 Brassica carinata HOM05D005781 ORTHO05D006835 7.1e-22 109.4 100 55.0
Sp6g27160 Schrenkiella parvula HOM05D005781 ORTHO05D006835 7.1e-22 109.4 99 56.6
BolC3t13430H Brassica oleracea HOM05D005781 ORTHO05D006835 1.0e-20 105.5 103 52.4
CARHR196210 Cardamine hirsuta HOM05D005781 ORTHO05D006835 1.0e-20 105.5 100 53.0
AL6G27950 Arabidopsis lyrata HOM05D005781 ORTHO05D006835 1.3e-20 105.1 101 51.5
A03p08090 Brassica napus HOM05D005781 ORTHO05D006835 3.9e-20 103.6 103 52.4
AT5G16950 Arabidopsis thaliana HOM05D005781 ORTHO05D006835 5.1e-20 103.2 98 51.0
BraA03t10134Z Brassica rapa HOM05D005781 ORTHO05D006835 5.1e-20 103.2 102 49.0
Carub.0006s1516 Capsella rubella HOM05D005781 ORTHO05D006835 6.6e-20 102.8 102 51.0
BcaB01g05237 Brassica carinata HOM05D005781 ORTHO05D006835 3.3e-19 100.5 105 48.6
SalBow1G0716 Salvia bowleyana HOM05D005781 ORTHO05D006835 4.3e-19 100.1 94 53.2
C03p09360 Brassica napus HOM05D005781 ORTHO05D006835 5.6e-19 99.8 107 47.7
VMungo0251G3003 Vigna mungo HOM05D005781 ORTHO05D006835 1.3e-18 98.6 73 61.6
ATR0626G090 Amborella trichopoda HOM05D005781 ORTHO05D006835 6.2e-18 96.3 103 50.5
Actinidia11611 Actinidia chinensis HOM05D005781 ORTHO05D006835 5.3e-17 93.2 60 78.3
SGA_v2.0_scaffold57G20299 Striga asiatica HOM05D005781 ORTHO05D006835 1.5e-16 91.7 80 56.2
HanXRQChr08g0228461 Helianthus annuus HOM05D005781 ORTHO05D006835 2.2e-15 87.8 56 69.6
A09p11320 Brassica napus HOM05D005781 ORTHO05D006835 1.9e-14 84.7 90 48.9
BraA09t36770Z Brassica rapa HOM05D005781 ORTHO05D006835 1.9e-14 84.7 90 48.9
Zm00001eb217150 Zea mays HOM05D000360 ORTHO05D006835 9.3e-14 82.4 72 51.4
Zm00001eb352440 Zea mays HOM05D000360 ORTHO05D006835 6.0e-13 79.7 72 50.0
RcHm_v2.0_Chr1g0326231 Rosa chinensis HOM05D005781 ORTHO05D006835 7.9e-13 79.3 70 58.6
SalBow1G0213 Salvia bowleyana HOM05D005781 ORTHO05D006835 2.3e-12 77.8 71 53.5
C09p13330 Brassica napus HOM05D005781 ORTHO05D006835 1.3e-10 72.0 76 43.4
BolC9t54226H Brassica oleracea HOM05D005781 ORTHO05D006835 1.3e-10 72.0 76 43.4
Lalb_Chr07g0188641 Lupinus albus HOM05D005781 ORTHO05D006835 2.8e-10 70.9 49 61.2
Pp3c9_710 Physcomitrium patens HOM05D005781 ORTHO05D006835 5.3e-09 66.6 53 52.8
BcaC04g22979 Brassica carinata HOM05D005781 ORTHO05D006835 1.2e-08 65.5 49 55.1
Mapoly0010s0158 Marchantia polymorpha HOM05D005781 ORTHO05D006835 2.6e-08 64.3 62 48.4
BcaB01g05235 Brassica carinata HOM05D005781 ORTHO05D006835 1.3e-07 62.0 41 63.4
Zm00001eb318190 Zea mays HOM05D000360 ORTHO05D006835 2.9e-07 60.8 60 45.0


User provided reference genes

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