Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015968 Carpinus fangiana HOM05D003086 ORTHO05D003347 3.3e-35 151.4 87 100.0
Haze_15678 Corylus avellana HOM05D003086 ORTHO05D003347 3.1e-17 91.7 67 70.1
Cfa003782 Carpinus fangiana HOM05D003086 ORTHO05D003347 1.5e-16 89.4 67 70.1
QL09p037005 Quercus lobata HOM05D003086 ORTHO05D003347 2.0e-16 89.0 64 67.2
Psat4g162600 Pisum sativum HOM05D003086 ORTHO05D003347 2.6e-16 88.6 58 75.9
CiPaw.05G227500 Carya illinoinensis HOM05D003086 ORTHO05D003347 3.4e-16 88.2 66 68.2
MBI17_g21048_MAGBIO Magnolia biondii HOM05D003086 ORTHO05D003347 7.6e-16 87.0 67 65.7
SHI13099 Sapria himalayana HOM05D003086 ORTHO05D003347 1.3e-15 86.3 57 73.7
COL.COLO4_06232 Corchorus olitorius HOM05D003086 ORTHO05D003347 3.8e-15 84.7 85 56.5
Atru.chr5.701 Acer truncatum HOM05D003086 ORTHO05D003347 4.9e-15 84.3 65 67.7
Gohir.A11G098500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 4.9e-15 84.3 64 67.2
Gorai.007G110300 Gossypium raimondii HOM05D003086 ORTHO05D003347 4.9e-15 84.3 64 67.2
Thecc.01G339800 Theobroma cacao HOM05D003086 ORTHO05D003347 4.9e-15 84.3 64 65.6
Medtr8g027380 Medicago truncatula HOM05D003086 ORTHO05D003347 6.4e-15 84.0 58 69.0
Manes.05G021200 Manihot esculenta HOM05D003086 ORTHO05D003347 8.4e-15 83.6 61 68.9
Nn3g18930 Nelumbo nucifera HOM05D003086 ORTHO05D003347 8.4e-15 83.6 64 64.1
Gohir.D11G103100 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.1e-14 83.2 64 67.2
TPR.G20234 Trifolium pratense HOM05D003086 ORTHO05D003347 1.1e-14 83.2 58 69.0
Gohir.A08G124800 Gossypium hirsutum HOM05D003086 ORTHO05D003347 3.2e-14 81.6 57 70.2
Potri.002G173700 Populus trichocarpa HOM05D003086 ORTHO05D003347 3.2e-14 81.6 56 73.2
HPP92_025720 Vanilla planifolia HOM05D003086 ORTHO05D003347 4.2e-14 81.3 60 68.3
Gorai.004G151100 Gossypium raimondii HOM05D003086 ORTHO05D003347 5.4e-14 80.9 64 65.6
QL08p045815 Quercus lobata HOM05D003086 ORTHO05D003347 5.4e-14 80.9 57 71.9
TAR636G1396 Trochodendron aralioides HOM05D003086 ORTHO05D003347 1.2e-13 79.7 57 68.4
Ca_23518_v3 Cicer arietinum L. HOM05D003086 ORTHO05D003347 2.1e-13 79.0 59 66.1
HanXRQChr04g0120471 Helianthus annuus HOM05D003086 ORTHO05D003347 2.1e-13 79.0 73 56.2
Glyma.07G054300 Glycine max HOM05D003086 ORTHO05D003347 2.7e-13 78.6 58 67.2
Sabra02G0139700 Salix brachista HOM05D003086 ORTHO05D003347 2.7e-13 78.6 56 69.6
Cpa.g.sc96.51 Carica papaya HOM05D003086 ORTHO05D003347 1.0e-12 76.6 61 62.3
TAR629G1883 Trochodendron aralioides HOM05D003086 ORTHO05D003347 2.3e-12 75.5 59 61.0
Lsat_1_v5_gn_4_30961 Lactuca sativa HOM05D003086 ORTHO05D003347 3.0e-12 75.1 56 62.5
Actinidia20253 Actinidia chinensis HOM05D003086 ORTHO05D003347 3.9e-12 74.7 64 60.9
Phvul.010G115200 Phaseolus vulgaris HOM05D003086 ORTHO05D003347 3.9e-12 74.7 60 60.0
CSS0006972 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 8.7e-12 73.6 65 56.9
Migut.B01892 Erythranthe guttata HOM05D003086 ORTHO05D003347 1.1e-11 73.2 55 63.6
Oeu027320.1 Olea europaea HOM05D003086 ORTHO05D003347 1.1e-11 73.2 68 54.4
TAR375G0287 Trochodendron aralioides HOM05D003086 ORTHO05D003347 1.9e-11 72.4 61 59.0
Ciclev10022804m.g Citrus clementina HOM05D003086 ORTHO05D003347 2.5e-11 72.0 59 61.0
Rhsim07G0002900 Rhododendron simsii HOM05D003086 ORTHO05D003347 4.3e-11 71.2 61 60.7
Sabra14G0073900 Salix brachista HOM05D003086 ORTHO05D003347 5.6e-11 70.9 53 64.2
Actinidia07974 Actinidia chinensis HOM05D003086 ORTHO05D003347 7.3e-11 70.5 64 57.8
Lsat_1_v5_gn_7_740 Lactuca sativa HOM05D003086 ORTHO05D003347 7.3e-11 70.5 77 53.2
Oeu010701.1 Olea europaea HOM05D003086 ORTHO05D003347 7.3e-11 70.5 68 52.9
Hma1.2p1_0591F.1_g185160 Hydrangea macrophylla HOM05D003086 ORTHO05D003347 9.6e-11 70.1 61 55.7
Lj3g0004362 Lotus japonicus HOM05D003086 ORTHO05D003347 9.6e-11 70.1 39 84.6
Sc23g0002030 Simmondsia chinensis HOM05D003086 ORTHO05D003347 1.6e-10 69.3 44 70.5
HanXRQChr16g0524361 Helianthus annuus HOM05D003086 ORTHO05D003347 3.6e-10 68.2 58 55.2
CDE02G0840 Ceratophyllum demersum HOM05D003086 ORTHO05D003347 4.8e-10 67.8 46 63.0
Aqoxy5G04301 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 8.1e-10 67.0 52 61.5
CSS0010966 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 8.1e-10 67.0 47 63.8
ECA233G0233 Erigeron canadensis HOM05D003086 ORTHO05D003347 1.8e-09 65.9 65 52.3
Migut.F00191 Erythranthe guttata HOM05D003086 ORTHO05D003347 1.8e-09 65.9 61 55.7
MBI16_g32085_MAGBIO Magnolia biondii HOM05D007433 ORTHO05D009199 1.8e-09 65.9 57 56.1
CSS0003230 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 2.4e-09 65.5 51 58.8
CSS0024306 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 2.4e-09 65.5 51 58.8
Cpa.g.sc1802.1 Carica papaya HOM05D003086 ORTHO05D003347 2.4e-09 65.5 64 53.1
CiPaw.12G080100 Carya illinoinensis HOM05D003086 ORTHO05D003347 2.4e-09 65.5 56 60.7
COL.COLO4_10758 Corchorus olitorius HOM05D003086 ORTHO05D003347 3.1e-09 65.1 60 60.0
SalBow3G3175 Salvia bowleyana HOM05D003086 ORTHO05D003347 3.1e-09 65.1 55 60.0
CAN.G874.33 Capsicum annuum HOM05D003086 ORTHO05D003347 4.0e-09 64.7 50 56.0
Rhsim09G0207000 Rhododendron simsii HOM05D003086 ORTHO05D003347 4.0e-09 64.7 61 52.5
ClCG01G000300 Citrullus lanatus HOM05D003086 ORTHO05D003347 5.3e-09 64.3 65 52.3
MELO3C005905.2 Cucumis melo HOM05D003086 ORTHO05D003347 6.9e-09 63.9 65 52.3
CsaV3_5G000270 Cucumis sativus L. HOM05D003086 ORTHO05D003347 6.9e-09 63.9 65 52.3
DCAR_022130 Daucus carota HOM05D003086 ORTHO05D003347 6.9e-09 63.9 49 63.3
Solyc06g052060.3 Solanum lycopersicum HOM05D003086 ORTHO05D003347 6.9e-09 63.9 50 58.0
Sopen06g018110 Solanum pennellii HOM05D003086 ORTHO05D003347 6.9e-09 63.9 50 58.0
PGSC0003DMG400019607 Solanum tuberosum HOM05D003086 ORTHO05D003347 6.9e-09 63.9 50 58.0
Actinidia18664 Actinidia chinensis HOM05D003086 ORTHO05D003347 9.0e-09 63.5 51 54.9
Aqoxy7G00049 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 9.0e-09 63.5 49 57.1
Prupe.5G126200 Prunus persica HOM05D003086 ORTHO05D003347 9.0e-09 63.5 62 51.6
SalBow4G0310 Salvia bowleyana HOM05D003086 ORTHO05D003347 1.2e-08 63.2 51 54.9
Thecc.03G304600 Theobroma cacao HOM05D003086 ORTHO05D003347 1.2e-08 63.2 61 57.4
AL6G44860 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 1.5e-08 62.8 59 55.9
AT4G10810 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 1.5e-08 62.8 59 55.9
CANSAT21G0721 Cannabis sativa HOM05D003086 ORTHO05D003347 1.5e-08 62.8 60 58.3
Nitab4.5_0000015g0220 Nicotiana tabacum HOM05D003086 ORTHO05D003347 1.5e-08 62.8 50 56.0
THA.LOC109116607 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 1.5e-08 62.8 62 54.8
CARHR255790 Cardamine hirsuta HOM05D003086 ORTHO05D003347 2.0e-08 62.4 59 55.9
MD07G1294800 Malus domestica HOM05D003086 ORTHO05D003347 2.0e-08 62.4 67 50.7
Prupe.2G314400 Prunus persica HOM05D003086 ORTHO05D003347 2.0e-08 62.4 67 52.2
PGR142G1468 Punica granatum HOM05D003086 ORTHO05D003347 2.0e-08 62.4 59 54.2
Thecc.03G304300 Theobroma cacao HOM05D003086 ORTHO05D003347 2.0e-08 62.4 61 57.4
MD01G1084100 Malus domestica HOM05D014299 ORTHO05D017012 2.6e-08 62.0 47 68.1
HPP92_013003 Vanilla planifolia HOM05D003086 ORTHO05D003347 2.6e-08 62.0 56 50.0
Migut.N01532 Erythranthe guttata HOM05D003086 ORTHO05D003347 3.4e-08 61.6 53 54.7
Os10g0502100 Oryza sativa ssp. japonica HOM05D003086 ORTHO05D003347 3.4e-08 61.6 62 51.6
ATR0797G001 Amborella trichopoda HOM05D007433 ORTHO05D003347 4.4e-08 61.2 49 59.2
Carub.0006s2958 Capsella rubella HOM05D003086 ORTHO05D003347 4.4e-08 61.2 59 54.2
Haze_09122 Corylus avellana HOM05D003086 ORTHO05D003347 4.4e-08 61.2 56 60.7
DCAR_008957 Daucus carota HOM05D003086 ORTHO05D003347 4.4e-08 61.2 61 54.1
MD06G1113400 Malus domestica HOM05D003086 ORTHO05D003347 4.4e-08 61.2 61 50.8
Sed0023695 Sechium edule HOM05D003086 ORTHO05D003347 4.4e-08 61.2 65 47.7
CAN.G481.40 Capsicum annuum HOM05D003086 ORTHO05D003347 5.8e-08 60.8 76 48.7
Lalb_Chr23g0271671 Lupinus albus HOM05D003086 ORTHO05D003347 5.8e-08 60.8 46 60.9
Peaxi162Scf00618g00332 Petunia axillaris HOM05D003086 ORTHO05D003347 5.8e-08 60.8 51 56.9
SalBow5G4530 Salvia bowleyana HOM05D003086 ORTHO05D003347 5.8e-08 60.8 60 51.7
MD01G1224000 Malus domestica HOM05D003086 ORTHO05D003347 7.6e-08 60.5 67 49.3
SEGI_15730 Sequoiadendron giganteum HOM05D003086 ORTHO05D003347 9.9e-08 60.1 53 58.5
PGR042G2701 Punica granatum HOM05D003086 ORTHO05D003347 1.3e-07 59.7 42 61.9
COL.COLO4_16806 Corchorus olitorius HOM05D003086 ORTHO05D003347 2.2e-07 58.9 54 55.6
Gohir.D08G124400 Gossypium hirsutum HOM05D003086 ORTHO05D003347 2.2e-07 58.9 60 55.0
Gorai.004G131100 Gossypium raimondii HOM05D003086 ORTHO05D003347 2.2e-07 58.9 60 55.0
Manes.01G039600 Manihot esculenta HOM05D003086 ORTHO05D003347 2.2e-07 58.9 60 51.7
Thecc.03G202500 Theobroma cacao HOM05D003086 ORTHO05D003347 2.2e-07 58.9 54 55.6
MD14G1134500 Malus domestica HOM05D003086 ORTHO05D003347 2.9e-07 58.5 47 59.6
Sed0015662 Sechium edule HOM05D003086 ORTHO05D003347 2.9e-07 58.5 47 59.6
Atru.chr9.1962 Acer truncatum HOM05D003086 ORTHO05D003347 3.8e-07 58.2 59 50.8
HPP92_014802 Vanilla planifolia HOM05D003086 ORTHO05D003347 3.8e-07 58.2 51 56.9
Prupe.2G191800 Prunus persica HOM05D014299 ORTHO05D017012 4.9e-07 57.8 36 77.8
Gohir.A12G248300 Gossypium hirsutum HOM05D003086 ORTHO05D003347 6.4e-07 57.4 83 42.2
Lalb_Chr04g0254361 Lupinus albus HOM05D003086 ORTHO05D003347 6.4e-07 57.4 37 70.3
RcHm_v2.0_Chr1g0381731 Rosa chinensis HOM05D003086 ORTHO05D003347 6.4e-07 57.4 85 48.2
SMO118G0557 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 6.4e-07 57.4 38 68.4
Thhalv10026968m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 8.4e-07 57.0 57 52.6
Gohir.A08G111400 Gossypium hirsutum HOM05D003086 ORTHO05D003347 8.4e-07 57.0 60 53.3
Peaxi162Scf00740g00215 Petunia axillaris HOM05D003086 ORTHO05D003347 8.4e-07 57.0 55 50.9
Aa31LG9G11270 Aethionema arabicum HOM05D003086 ORTHO05D003347 1.1e-06 56.6 61 50.8
Cc02_g01250 Coffea canephora HOM05D003086 ORTHO05D003347 1.1e-06 56.6 51 52.9
Gohir.D12G249000 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.1e-06 56.6 66 50.0
Gorai.008G267200 Gossypium raimondii HOM05D003086 ORTHO05D003347 1.1e-06 56.6 66 50.0
Lj1g0020347 Lotus japonicus HOM05D003086 ORTHO05D003347 1.1e-06 56.6 65 49.2
A02p26470 Brassica napus HOM05D003086 ORTHO05D003347 1.4e-06 56.2 59 47.5
BraA02t07650Z Brassica rapa HOM05D003086 ORTHO05D003347 1.4e-06 56.2 59 47.5
CiPaw.11G115700 Carya illinoinensis HOM05D003086 ORTHO05D003347 1.4e-06 56.2 47 57.4
BcaB05g23875 Brassica carinata HOM05D003086 ORTHO05D003347 1.9e-06 55.8 59 47.5
Nitab4.5_0002780g0040 Nicotiana tabacum HOM05D003086 ORTHO05D003347 1.9e-06 55.8 54 51.9
Nitab4.5_0007100g0040 Nicotiana tabacum HOM05D003086 ORTHO05D003347 1.9e-06 55.8 54 51.9
Rhsim07G0217700 Rhododendron simsii HOM05D007433 ORTHO05D009199 1.9e-06 55.8 57 52.6
THA.LOC104813050 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 1.9e-06 55.8 56 53.6
Zm00001eb029410 Zea mays HOM05D003086 ORTHO05D003347 1.9e-06 55.8 57 50.9
EL10Ac1g00241 Beta vulgaris HOM05D003086 ORTHO05D003347 2.4e-06 55.5 29 79.3
BcaC09g50920 Brassica carinata HOM05D003086 ORTHO05D003347 2.4e-06 55.5 57 47.4
C01p19250 Brassica napus HOM05D003086 ORTHO05D003347 2.4e-06 55.5 57 47.4
BolC1t01850H Brassica oleracea HOM05D003086 ORTHO05D003347 2.4e-06 55.5 57 47.4
BraA01t01474Z Brassica rapa HOM05D003086 ORTHO05D003347 2.4e-06 55.5 57 47.4
BraA08t32861Z Brassica rapa HOM05D003086 ORTHO05D003347 2.4e-06 55.5 57 47.4
CAN.G1415.17 Capsicum annuum HOM05D003086 ORTHO05D003347 2.4e-06 55.5 54 53.7
ClCG01G001890 Citrullus lanatus HOM05D003086 ORTHO05D003347 2.4e-06 55.5 42 61.9
QL02p028382 Quercus lobata HOM05D003086 ORTHO05D003347 2.4e-06 55.5 52 50.0
Sopen03g022700 Solanum pennellii HOM05D003086 ORTHO05D003347 2.4e-06 55.5 54 50.0
PGSC0003DMG400018543 Solanum tuberosum HOM05D003086 ORTHO05D003347 2.4e-06 55.5 54 50.0
MELO3C005750.2 Cucumis melo HOM05D003086 ORTHO05D003347 3.2e-06 55.1 42 61.9
Dinv44935 Davidia involucrata HOM05D007433 ORTHO05D009199 3.2e-06 55.1 59 52.5
Potri.001G087200 Populus trichocarpa HOM05D003086 ORTHO05D003347 3.2e-06 55.1 59 49.2
QL12p038428 Quercus lobata HOM05D007433 ORTHO05D009199 3.2e-06 55.1 59 49.2
AUR62004513 Chenopodium quinoa HOM05D003086 ORTHO05D003347 4.2e-06 54.7 34 67.6
FAN03G1568 Fragaria x ananassa HOM05D014299 ORTHO05D017012 4.2e-06 54.7 51 58.8
Glyma.05G219700 Glycine max HOM05D003086 ORTHO05D003347 4.2e-06 54.7 48 52.1
Glyma.08G026000 Glycine max HOM05D003086 ORTHO05D003347 4.2e-06 54.7 48 52.1
BcaB01g02737 Brassica carinata HOM05D003086 ORTHO05D003347 5.4e-06 54.3 42 61.9
BcaC01g04661 Brassica carinata HOM05D003086 ORTHO05D003347 5.4e-06 54.3 42 61.9
A03p29280 Brassica napus HOM05D003086 ORTHO05D003347 5.4e-06 54.3 42 61.9
C03p35200 Brassica napus HOM05D003086 ORTHO05D003347 5.4e-06 54.3 42 61.9
BolC3t15831H Brassica oleracea HOM05D003086 ORTHO05D003347 5.4e-06 54.3 42 61.9
BraA03t12124Z Brassica rapa HOM05D003086 ORTHO05D003347 5.4e-06 54.3 42 61.9
Ciclev10023176m.g Citrus clementina HOM05D003086 ORTHO05D003347 5.4e-06 54.3 64 45.3
Medtr3g491900 Medicago truncatula HOM05D003086 ORTHO05D003347 5.4e-06 54.3 33 72.7
Os03g0675500 Oryza sativa ssp. japonica HOM05D007433 ORTHO05D003347 5.4e-06 54.3 37 70.3
Sabra01G0063400 Salix brachista HOM05D003086 ORTHO05D003347 5.4e-06 54.3 59 50.8
BcaB05g23876 Brassica carinata HOM05D003086 ORTHO05D003347 7.1e-06 53.9 59 49.2
A09p28400 Brassica napus HOM05D003086 ORTHO05D003347 7.1e-06 53.9 40 62.5
BraA09t38405Z Brassica rapa HOM05D003086 ORTHO05D003347 7.1e-06 53.9 40 62.5
CARHR046350 Cardamine hirsuta HOM05D003086 ORTHO05D003347 7.1e-06 53.9 57 54.4
Thhalv10029101m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 7.1e-06 53.9 59 49.2
Psat7g022720 Pisum sativum HOM05D003086 ORTHO05D003347 7.1e-06 53.9 47 53.2
Sp6g06680 Schrenkiella parvula HOM05D003086 ORTHO05D003347 7.1e-06 53.9 51 52.9
Sopen05g028970 Solanum pennellii HOM05D003086 ORTHO05D003347 7.1e-06 53.9 60 46.7
Cc10_g07560 Coffea canephora HOM05D007433 ORTHO05D009199 9.3e-06 53.5 55 49.1
FAN03G2739 Fragaria x ananassa HOM05D002608 ORTHO05D013420 9.3e-06 53.5 70 51.4
Lalb_Chr05g0223911 Lupinus albus HOM05D003086 ORTHO05D003347 9.3e-06 53.5 41 58.5
Nn6g34518 Nelumbo nucifera HOM05D007433 ORTHO05D009199 9.3e-06 53.5 45 57.8


User provided reference genes

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