Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015959 Carpinus fangiana HOM05D005489 ORTHO05D006629 6.3e-105 384.0 182 100.0
Haze_00523 Corylus avellana HOM05D005489 ORTHO05D006629 2.0e-66 256.1 152 84.2
CiPaw.05G228700 Carya illinoinensis HOM05D005489 ORTHO05D006629 2.5e-37 159.5 74 95.9
Manes.18G073000 Manihot esculenta HOM05D005489 ORTHO05D006629 4.3e-37 158.7 74 95.9
QL12p035283 Quercus lobata HOM05D005489 ORTHO05D006629 4.3e-37 158.7 74 95.9
Sc01g0001550 Simmondsia chinensis HOM05D005489 ORTHO05D006629 4.3e-37 158.7 132 62.1
ClCG03G009110 Citrullus lanatus HOM05D005489 ORTHO05D006629 5.6e-37 158.3 74 95.9
MELO3C022783.2 Cucumis melo HOM05D005489 ORTHO05D006629 5.6e-37 158.3 74 95.9
CsaV3_5G023520 Cucumis sativus L. HOM05D005489 ORTHO05D006629 5.6e-37 158.3 74 95.9
Ciclev10002818m.g Citrus clementina HOM05D005489 ORTHO05D006629 7.3e-37 157.9 91 82.4
TWI56G0906 Tripterygium wilfordii HOM05D005489 ORTHO05D006629 7.3e-37 157.9 91 81.3
MD15G1359200 Malus domestica HOM05D005489 ORTHO05D006629 1.2e-36 157.1 91 81.3
Nn5g27958 Nelumbo nucifera HOM05D005489 ORTHO05D006629 1.2e-36 157.1 141 60.3
Nitab4.5_0000051g0120 Nicotiana tabacum HOM05D005489 ORTHO05D006629 1.2e-36 157.1 132 62.1
Atru.chr13.1318 Acer truncatum HOM05D005489 ORTHO05D006629 1.6e-36 156.8 74 91.9
Atru.chr13.1362 Acer truncatum HOM05D005489 ORTHO05D006629 1.6e-36 156.8 74 91.9
CANSAT25G2554 Cannabis sativa HOM05D005489 ORTHO05D006629 1.6e-36 156.8 75 90.7
Hma1.2p1_0221F.1_g093180 Hydrangea macrophylla HOM05D005489 ORTHO05D006629 1.6e-36 156.8 91 81.3
MBI06_g01046_MAGBIO Magnolia biondii HOM05D005489 ORTHO05D006629 1.6e-36 156.8 74 93.2
Sopen11g008580 Solanum pennellii HOM05D005489 ORTHO05D006629 1.6e-36 156.8 131 61.1
PGSC0003DMG400027793 Solanum tuberosum HOM05D005489 ORTHO05D006629 1.6e-36 156.8 131 61.8
COL.COLO4_32811 Corchorus olitorius HOM05D005489 ORTHO05D006629 2.1e-36 156.4 91 82.4
Prupe.1G506000 Prunus persica HOM05D005489 ORTHO05D006629 2.1e-36 156.4 91 81.3
PGR044G1289 Punica granatum HOM05D005489 ORTHO05D006629 2.1e-36 156.4 74 91.9
Sed0015736 Sechium edule HOM05D005489 ORTHO05D006629 2.8e-36 156.0 74 93.2
Thecc.08G116800 Theobroma cacao HOM05D005489 ORTHO05D006629 2.8e-36 156.0 74 94.6
Solyc11g013550.2 Solanum lycopersicum HOM05D005489 ORTHO05D006629 3.6e-36 155.6 131 60.3
Aqoxy5G02479 Aquilegia oxysepala HOM05D005489 ORTHO05D006629 4.7e-36 155.2 74 93.2
Dinv26716 Davidia involucrata HOM05D005489 ORTHO05D006629 4.7e-36 155.2 91 81.3
Gohir.A01G187700 Gossypium hirsutum HOM05D005489 ORTHO05D006629 6.2e-36 154.8 91 80.2
HanXRQChr11g0326271 Helianthus annuus HOM05D005489 ORTHO05D006629 6.2e-36 154.8 91 79.1
Lsat_1_v5_gn_4_135561 Lactuca sativa HOM05D005489 ORTHO05D006629 6.2e-36 154.8 91 80.2
Hund16821 Selenicereus undatus HOM05D005489 ORTHO05D006629 6.2e-36 154.8 134 59.0
THA.LOC104806808 Tarenaya hassleriana HOM05D005489 ORTHO05D006629 8.1e-36 154.5 91 80.2
Aa31LG6G9070 Aethionema arabicum HOM05D005489 ORTHO05D006629 1.1e-35 154.1 132 60.6
Dinv27383 Davidia involucrata HOM05D005489 ORTHO05D006629 1.1e-35 154.1 91 81.3
HanXRQChr09g0260151 Helianthus annuus HOM05D005489 ORTHO05D006629 1.1e-35 154.1 91 79.1
Nitab4.5_0002332g0020 Nicotiana tabacum HOM05D005489 ORTHO05D006629 1.1e-35 154.1 128 63.3
TAR127G0005 Trochodendron aralioides HOM05D005489 ORTHO05D006629 1.1e-35 154.1 74 90.5
Duzib041G0073 Durio zibethinus HOM05D005489 ORTHO05D006629 1.4e-35 153.7 74 93.2
Gohir.D02G082100 Gossypium hirsutum HOM05D005489 ORTHO05D006629 1.4e-35 153.7 74 91.9
TAR628G1556 Trochodendron aralioides HOM05D005489 ORTHO05D006629 1.4e-35 153.7 74 89.2
GSVIVG01008943001 Vitis vinifera HOM05D005489 ORTHO05D006629 1.4e-35 153.7 74 91.9
Gohir.A02G075000 Gossypium hirsutum HOM05D005489 ORTHO05D006629 1.8e-35 153.3 74 90.5
PSO017G5790 Papaver somniferum HOM05D005489 ORTHO05D006629 2.3e-35 152.9 74 93.2
PSO170G3859 Papaver somniferum HOM05D005489 ORTHO05D006629 2.3e-35 152.9 74 93.2
Gorai.002G220400 Gossypium raimondii HOM05D005489 ORTHO05D006629 3.1e-35 152.5 91 79.1
Duzib093G1687 Durio zibethinus HOM05D005489 ORTHO05D006629 5.2e-35 151.8 74 91.9
FvH4_5g38950 Fragaria vesca HOM05D005489 ORTHO05D006629 5.2e-35 151.8 74 90.5
FAN04G1587 Fragaria x ananassa HOM05D005489 ORTHO05D006629 5.2e-35 151.8 74 90.5
FAN08G2064 Fragaria x ananassa HOM05D005489 ORTHO05D006629 5.2e-35 151.8 74 90.5
FAN13G3020 Fragaria x ananassa HOM05D005489 ORTHO05D006629 5.2e-35 151.8 74 90.5
FAN18G3455 Fragaria x ananassa HOM05D005489 ORTHO05D006629 5.2e-35 151.8 74 90.5
Nn1g08538 Nelumbo nucifera HOM05D005489 ORTHO05D006629 5.2e-35 151.8 91 78.0
RcHm_v2.0_Chr7g0240921 Rosa chinensis HOM05D005489 ORTHO05D006629 5.2e-35 151.8 74 90.5
Sabra02G0070300 Salix brachista HOM05D005489 ORTHO05D006629 5.2e-35 151.8 74 91.9
THA.LOC104813132 Tarenaya hassleriana HOM05D005489 ORTHO05D006629 5.2e-35 151.8 91 78.0
Rhsim06G0109100 Rhododendron simsii HOM05D005489 ORTHO05D006629 6.8e-35 151.4 132 62.1
TWI12G0464 Tripterygium wilfordii HOM05D005489 ORTHO05D006629 6.8e-35 151.4 74 89.2
CAN.G255.20 Capsicum annuum HOM05D005489 ORTHO05D006629 8.9e-35 151.0 131 58.8
CDE06G1809 Ceratophyllum demersum HOM05D005489 ORTHO05D006629 8.9e-35 151.0 91 75.8
Peaxi162Scf01011g00023 Petunia axillaris HOM05D005489 ORTHO05D006629 8.9e-35 151.0 131 61.1
Potri.005G171901 Populus trichocarpa HOM05D005489 ORTHO05D006629 8.9e-35 151.0 74 90.5
TAR197G0004 Trochodendron aralioides HOM05D005489 ORTHO05D006629 1.2e-34 150.6 74 89.2
Potri.002G089300 Populus trichocarpa HOM05D005489 ORTHO05D006629 1.5e-34 150.2 74 90.5
Glyma.06G108600 Glycine max HOM05D005489 ORTHO05D006629 2.0e-34 149.8 131 60.3
AL1G51120 Arabidopsis lyrata HOM05D005489 ORTHO05D006629 2.6e-34 149.4 91 75.8
AT1G36980 Arabidopsis thaliana HOM05D005489 ORTHO05D006629 2.6e-34 149.4 91 75.8
arahy.Tifrunner.gnm1.ann1.64ZY3M Arachis hypogaea HOM05D005489 ORTHO05D006629 2.6e-34 149.4 131 60.3
Gohir.A06G041000 Gossypium hirsutum HOM05D005489 ORTHO05D006629 2.6e-34 149.4 74 87.8
Gohir.D06G041900 Gossypium hirsutum HOM05D005489 ORTHO05D006629 2.6e-34 149.4 74 87.8
Gorai.010G047100 Gossypium raimondii HOM05D005489 ORTHO05D006629 2.6e-34 149.4 74 87.8
SGA_v2.0_scaffold118G32436 Striga asiatica HOM05D005489 ORTHO05D006629 2.6e-34 149.4 74 90.5
arahy.Tifrunner.gnm1.ann1.204R5H Arachis hypogaea HOM05D005489 ORTHO05D006629 3.4e-34 149.1 131 60.3
DCAR_014792 Daucus carota HOM05D005489 ORTHO05D006629 3.4e-34 149.1 132 58.3
BcaC05g27681 Brassica carinata HOM05D005489 ORTHO05D006629 4.4e-34 148.7 118 63.6
Glyma.04G253700 Glycine max HOM05D005489 ORTHO05D006629 4.4e-34 148.7 131 59.5
BcaB03g13640 Brassica carinata HOM05D005489 ORTHO05D006629 5.8e-34 148.3 91 74.7
A05p23180 Brassica napus HOM05D005489 ORTHO05D006629 5.8e-34 148.3 91 74.7
C05p36630 Brassica napus HOM05D005489 ORTHO05D006629 5.8e-34 148.3 91 74.7
BraA05t21185Z Brassica rapa HOM05D005489 ORTHO05D006629 5.8e-34 148.3 91 74.7
SGA_v2.0_scaffold24G10504 Striga asiatica HOM05D005489 ORTHO05D006629 5.8e-34 148.3 131 59.5
Thhalv10005115m.g Eutrema salsugineum HOM05D005489 ORTHO05D006629 7.6e-34 147.9 91 73.6
CARHR034780 Cardamine hirsuta HOM05D005489 ORTHO05D006629 9.9e-34 147.5 91 73.6
Lj1g0000272 Lotus japonicus HOM05D005489 ORTHO05D006629 9.9e-34 147.5 74 87.8
VMungo1127G1458 Vigna mungo HOM05D005489 ORTHO05D006629 9.9e-34 147.5 131 58.0
BcaC05g27682 Brassica carinata HOM05D005489 ORTHO05D006629 1.3e-33 147.1 74 85.1
C05p36640 Brassica napus HOM05D005489 ORTHO05D006629 1.3e-33 147.1 74 85.1
Carub.0001s3388 Capsella rubella HOM05D005489 ORTHO05D006629 1.3e-33 147.1 91 74.7
SalBow1G3581 Salvia bowleyana HOM05D005489 ORTHO05D006629 1.3e-33 147.1 129 59.7
EL10Ac1g00039 Beta vulgaris HOM05D005489 ORTHO05D006629 1.7e-33 146.7 91 76.9
Ca_25761_v3 Cicer arietinum L. HOM05D005489 ORTHO05D006629 1.7e-33 146.7 131 58.8
ECA232G0625 Erigeron canadensis HOM05D005489 ORTHO05D006629 1.7e-33 146.7 87 81.6
Sp1g31180 Schrenkiella parvula HOM05D005489 ORTHO05D006629 1.7e-33 146.7 91 73.6
ATR0121G008 Amborella trichopoda HOM05D005489 ORTHO05D006629 2.2e-33 146.4 74 87.8
Migut.C01190 Erythranthe guttata HOM05D005489 ORTHO05D006629 2.2e-33 146.4 74 86.5
DCAR_023128 Daucus carota HOM05D005489 ORTHO05D006629 2.9e-33 146.0 73 86.3
Medtr3g073300 Medicago truncatula HOM05D005489 ORTHO05D006629 2.9e-33 146.0 131 58.0
Psat5g135600 Pisum sativum HOM05D005489 ORTHO05D006629 2.9e-33 146.0 74 86.5
TPR.G32948 Trifolium pratense HOM05D005489 ORTHO05D006629 2.9e-33 146.0 131 58.0
Phvul.011G165300 Phaseolus vulgaris HOM05D005489 ORTHO05D006629 3.8e-33 145.6 131 57.3
Oeu043793.1 Olea europaea HOM05D005489 ORTHO05D006629 4.9e-33 145.2 93 74.2
Gohir.D01G181900 Gossypium hirsutum HOM05D005489 ORTHO05D006629 1.1e-32 144.1 91 76.9
MSTRG.1486 Avicennia marina HOM05D005489 ORTHO05D006629 1.4e-32 143.7 131 58.0
Lalb_Chr11g0065701 Lupinus albus HOM05D005489 ORTHO05D006629 1.4e-32 143.7 131 57.3
Lalb_Chr08g0241711 Lupinus albus HOM05D005489 ORTHO05D006629 1.9e-32 143.3 131 58.0
Cc10_g10440 Coffea canephora HOM05D005489 ORTHO05D006629 2.4e-32 142.9 130 62.3
unitig_747.g21477 Utricularia gibba HOM05D003597 ORTHO05D004420 2.4e-32 142.9 80 78.8
BolC5t32398H Brassica oleracea HOM05D005489 ORTHO05D006629 5.4e-32 141.7 97 70.1
Oeu032962.1 Olea europaea HOM05D005489 ORTHO05D006629 5.4e-32 141.7 131 58.0
Eucgr.F04378 Eucalyptus grandis HOM05D005489 ORTHO05D006629 2.7e-31 139.4 139 54.7
Nn2g15248 Nelumbo nucifera HOM05D005489 ORTHO05D006629 2.7e-31 139.4 82 78.0
Migut.N03320 Erythranthe guttata HOM05D005489 ORTHO05D006629 4.6e-31 138.7 74 85.1
HPP92_002297 Vanilla planifolia HOM05D005489 ORTHO05D006629 2.5e-29 132.9 130 56.2
Oeu050268.1 Olea europaea HOM05D005489 ORTHO05D006629 2.8e-28 129.4 77 79.2
SEGI_34511 Sequoiadendron giganteum HOM05D005489 ORTHO05D006629 6.2e-28 128.3 129 54.3
Actinidia29431 Actinidia chinensis HOM05D005489 ORTHO05D006629 8.1e-28 127.9 97 61.9
HPP92_005944 Vanilla planifolia HOM05D005489 ORTHO05D006629 1.8e-27 126.7 91 67.0
Zm00001eb100550 Zea mays HOM05D005489 ORTHO05D006629 1.2e-26 124.0 135 50.4
Os02g0566900 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 1.5e-26 123.6 80 68.8
Zm00001eb244520 Zea mays HOM05D005489 ORTHO05D006629 2.6e-26 122.9 76 71.1
Os09g0453000 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 3.4e-26 122.5 135 51.1
AagrBONN_evm.TU.Sc2ySwM_344.2049 Anthoceros agrestis HOM05D005489 ORTHO05D006629 5.8e-26 121.7 76 71.1
Pp3c1_10200 Physcomitrium patens HOM05D005489 ORTHO05D006629 9.3e-24 114.4 92 56.5
Pp3c2_28270 Physcomitrium patens HOM05D005489 ORTHO05D006629 1.6e-23 113.6 92 57.6
SMO116G0262 Selaginella moellendorffii HOM05D005489 ORTHO05D006629 6.0e-23 111.7 73 67.1
CBR_g30829 Chara braunii HOM05D005489 ORTHO05D006629 2.3e-22 109.8 124 46.8
Mapoly0004s0020 Marchantia polymorpha HOM05D005489 ORTHO05D006629 6.6e-22 108.2 90 56.7
Sabra05G0129400 Salix brachista HOM05D005489 ORTHO05D006629 6.0e-15 85.1 74 59.5
Cre01.g042950 Chlamydomonas reinhardtii HOM05D005489 ORTHO05D006629 5.6e-13 78.6 81 40.7
SalBow7G1125 Salvia bowleyana HOM05D002998 ORTHO05D006629 7.6e-10 68.2 35 82.9
SalBow7G4082 Salvia bowleyana HOM05D005489 ORTHO05D006629 7.6e-10 68.2 35 82.9
Gorai.005G092000 Gossypium raimondii HOM05D005489 ORTHO05D006629 3.8e-09 65.9 30 93.3
AUR62004694 Chenopodium quinoa HOM05D005489 ORTHO05D006629 4.2e-08 62.4 34 82.4
TAR161G0001 Trochodendron aralioides HOM05D005489 ORTHO05D006629 9.3e-08 61.2 51 54.9


User provided reference genes

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