Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015953 Carpinus fangiana HOM05D006846 ORTHO05D008473 5.3e-84 314.3 158 100.0
Haze_00535 Corylus avellana HOM05D006846 ORTHO05D008473 2.9e-58 228.8 164 77.4
Haze_00536 Corylus avellana HOM05D006846 ORTHO05D008473 5.2e-55 218.0 164 75.0
CiPaw.01G161800 Carya illinoinensis HOM05D006846 ORTHO05D008473 3.3e-54 215.3 172 69.2
Prupe.1G108100 Prunus persica HOM05D006846 ORTHO05D008473 3.1e-52 208.8 165 67.9
QL06p041421 Quercus lobata HOM05D006846 ORTHO05D008473 3.8e-50 201.8 164 66.5
RcHm_v2.0_Chr4g0426881 Rosa chinensis HOM05D006846 ORTHO05D008473 5.0e-50 201.4 162 64.8
MD13G1143600 Malus domestica HOM05D006846 ORTHO05D008473 1.1e-49 200.3 164 64.0
FAN07G1325 Fragaria x ananassa HOM05D006846 ORTHO05D008473 3.2e-49 198.7 162 62.3
FvH4_4g21260 Fragaria vesca HOM05D006846 ORTHO05D008473 1.2e-48 196.8 162 61.7
FAN12G0803 Fragaria x ananassa HOM05D006846 ORTHO05D008473 1.3e-45 186.8 187 54.0
PGR004G1594 Punica granatum HOM05D006846 ORTHO05D008473 1.6e-43 179.9 156 62.2
PGR033G0007 Punica granatum HOM05D006846 ORTHO05D008473 1.6e-43 179.9 156 62.2
GSVIVG01017604001 Vitis vinifera HOM05D006846 ORTHO05D008473 1.6e-43 179.9 126 73.0
GSVIVG01017661001 Vitis vinifera HOM05D006846 ORTHO05D008473 1.6e-43 179.9 126 73.0
Eucgr.H04110 Eucalyptus grandis HOM05D006846 ORTHO05D008473 7.7e-43 177.6 165 58.8
MELO3C003207.2 Cucumis melo HOM05D006846 ORTHO05D008473 3.8e-42 175.3 142 63.4
Thecc.04G310600 Theobroma cacao HOM05D006846 ORTHO05D008473 3.2e-41 172.2 124 69.4
Hma1.2p1_0013F.1_g007970 Hydrangea macrophylla HOM05D006846 ORTHO05D008473 4.2e-41 171.8 117 74.4
MD16G1146600 Malus domestica HOM05D006846 ORTHO05D008473 5.5e-41 171.4 155 58.7
Nitab4.5_0007368g0030 Nicotiana tabacum HOM05D006846 ORTHO05D008473 5.5e-41 171.4 130 64.6
AT1G48170 Arabidopsis thaliana HOM05D006846 ORTHO05D008473 7.2e-41 171.0 121 71.1
Carub.0001s3726 Capsella rubella HOM05D003832 ORTHO05D004365 1.2e-40 170.2 123 69.1
Medtr2g046100 Medicago truncatula HOM05D006846 ORTHO05D008473 1.2e-40 170.2 138 65.2
Ciclev10007018m.g Citrus clementina HOM05D006846 ORTHO05D008473 1.6e-40 169.9 161 57.8
Actinidia18502 Actinidia chinensis HOM05D006846 ORTHO05D008473 2.1e-40 169.5 165 57.0
Sp3g23740 Schrenkiella parvula HOM05D006846 ORTHO05D008473 2.1e-40 169.5 116 71.6
Manes.03G210800 Manihot esculenta HOM05D006846 ORTHO05D008473 2.7e-40 169.1 130 66.2
AL1G54740 Arabidopsis lyrata HOM05D006846 ORTHO05D008473 3.6e-40 168.7 121 71.1
CsaV3_4G025810 Cucumis sativus L. HOM05D006846 ORTHO05D008473 3.6e-40 168.7 140 62.9
Nitab4.5_0007474g0050 Nicotiana tabacum HOM05D006846 ORTHO05D008473 4.7e-40 168.3 130 63.8
Sabra08G0075400 Salix brachista HOM05D006846 ORTHO05D008473 4.7e-40 168.3 168 54.8
Carub.0005s0005 Capsella rubella HOM05D006846 ORTHO05D008473 6.1e-40 167.9 116 71.6
Duzib212G0339 Durio zibethinus HOM05D006846 ORTHO05D008473 6.1e-40 167.9 124 68.5
Gohir.D09G242700 Gossypium hirsutum HOM05D006846 ORTHO05D008473 8.0e-40 167.5 132 67.4
Gorai.006G266400 Gossypium raimondii HOM05D006846 ORTHO05D008473 8.0e-40 167.5 132 67.4
VMungo1309G3101 Vigna mungo HOM05D006846 ORTHO05D008473 8.0e-40 167.5 129 66.7
Lj6A699T67 Lonicera japonica HOM05D006846 ORTHO05D008473 1.8e-39 166.4 134 64.2
Phvul.009G219800 Phaseolus vulgaris HOM05D006846 ORTHO05D008473 1.8e-39 166.4 129 65.1
Potri.008G099700 Populus trichocarpa HOM05D006846 ORTHO05D008473 1.8e-39 166.4 153 57.5
PSO339G5299 Papaver somniferum HOM05D006846 ORTHO05D008473 2.3e-39 166.0 116 72.4
Rhsim04G0247300 Rhododendron simsii HOM05D006846 ORTHO05D008473 2.3e-39 166.0 146 58.9
Sed0003831 Sechium edule HOM05D006846 ORTHO05D008473 2.3e-39 166.0 149 58.4
THA.LOC104821808 Tarenaya hassleriana HOM05D006846 ORTHO05D008473 2.3e-39 166.0 117 70.9
MSTRG.14213 Avicennia marina HOM05D006846 ORTHO05D008473 3.0e-39 165.6 129 65.1
Migut.H02019 Erythranthe guttata HOM05D006846 ORTHO05D008473 5.2e-39 164.9 121 66.1
Lj6g0016026 Lotus japonicus HOM05D006846 ORTHO05D008473 8.8e-39 164.1 142 59.2
CARHR037810 Cardamine hirsuta HOM05D006846 ORTHO05D008473 1.5e-38 163.3 124 68.5
Solyc06g053470.3 Solanum lycopersicum HOM05D006846 ORTHO05D008473 1.5e-38 163.3 130 63.1
Sopen06g018550 Solanum pennellii HOM05D006846 ORTHO05D008473 1.5e-38 163.3 130 63.1
Aqoxy1G00358 Aquilegia oxysepala HOM05D006846 ORTHO05D008473 2.6e-38 162.5 124 63.7
Thhalv10012405m.g Eutrema salsugineum HOM05D006846 ORTHO05D008473 3.4e-38 162.2 151 58.9
Glyma.15G188800 Glycine max HOM05D006846 ORTHO05D008473 3.4e-38 162.2 131 64.1
Hund16859 Selenicereus undatus HOM05D006846 ORTHO05D008473 5.7e-38 161.4 118 67.8
PGSC0003DMG400016299 Solanum tuberosum HOM05D006846 ORTHO05D008473 5.7e-38 161.4 128 62.5
PSO384G1587 Papaver somniferum HOM05D006846 ORTHO05D008473 7.5e-38 161.0 116 69.8
BcaB07g33786 Brassica carinata HOM05D006846 ORTHO05D008473 9.8e-38 160.6 115 69.6
A06p04640 Brassica napus HOM05D006846 ORTHO05D008473 1.3e-37 160.2 153 56.2
BraA06t23668Z Brassica rapa HOM05D006846 ORTHO05D008473 1.3e-37 160.2 153 56.2
Peaxi162Scf00579g00010 Petunia axillaris HOM05D006846 ORTHO05D008473 1.3e-37 160.2 129 61.2
AUR62019042 Chenopodium quinoa HOM05D006846 ORTHO05D008473 1.7e-37 159.8 120 65.8
vmacro08003 Vaccinium macrocarpon HOM05D006846 ORTHO05D008473 1.7e-37 159.8 172 51.2
BolC6t35393H Brassica oleracea HOM05D006846 ORTHO05D008473 2.2e-37 159.5 119 66.4
CARHR290870 Cardamine hirsuta HOM05D006846 ORTHO05D008473 2.2e-37 159.5 115 70.4
SGA_v2.0_scaffold127G34033 Striga asiatica HOM05D006846 ORTHO05D008473 2.2e-37 159.5 124 65.3
BcaC08g43012 Brassica carinata HOM05D006846 ORTHO05D008473 2.8e-37 159.1 119 67.2
C06p02670 Brassica napus HOM05D006846 ORTHO05D008473 2.8e-37 159.1 119 67.2
Os12g0182800 Oryza sativa ssp. japonica HOM05D006846 ORTHO05D008473 2.8e-37 159.1 131 61.8
Ca_02363_v3 Cicer arietinum L. HOM05D006846 ORTHO05D008473 3.7e-37 158.7 128 62.5
Lalb_Chr07g0181811 Lupinus albus HOM05D006846 ORTHO05D008473 3.7e-37 158.7 128 61.7
Psat1g017720 Pisum sativum HOM05D006846 ORTHO05D008473 3.7e-37 158.7 134 61.9
CANSAT01G2167 Cannabis sativa HOM05D006846 ORTHO05D008473 4.9e-37 158.3 161 53.4
Dinv29523 Davidia involucrata HOM05D006846 ORTHO05D008473 1.1e-36 157.1 105 71.4
Sc23g0000700 Simmondsia chinensis HOM05D006846 ORTHO05D008473 1.1e-36 157.1 128 60.2
CDE12G0609 Ceratophyllum demersum HOM05D006846 ORTHO05D008473 1.4e-36 156.8 118 66.1
AUR62027881 Chenopodium quinoa HOM05D006846 ORTHO05D008473 1.4e-36 156.8 120 65.0
Aa31LG10G5560 Aethionema arabicum HOM05D006846 ORTHO05D008473 1.2e-35 153.7 124 66.1
CAN.G136.4 Capsicum annuum HOM05D006846 ORTHO05D008473 1.2e-35 153.7 128 60.2
EL10Ac1g01060 Beta vulgaris HOM05D006846 ORTHO05D008473 1.6e-35 153.3 121 65.3
ECA233G5003 Erigeron canadensis HOM05D006846 ORTHO05D008473 1.6e-35 153.3 113 66.4
SGA_v2.0_scaffold127G34034 Striga asiatica HOM05D006846 ORTHO05D008473 4.5e-35 151.8 127 63.0
MBI11_g10320_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 5.9e-35 151.4 158 52.5
QL11p040346 Quercus lobata HOM05D006846 ORTHO05D008473 7.7e-35 151.0 163 56.4
SEGI_09291 Sequoiadendron giganteum HOM05D006846 ORTHO05D008473 1.3e-34 150.2 144 53.5
SGA_v2.0_scaffold64G22040 Striga asiatica HOM05D006846 ORTHO05D008473 1.7e-34 149.8 143 56.6
Zm00001eb359370 Zea mays HOM05D006846 ORTHO05D008473 2.9e-34 149.1 122 61.5
HanXRQChr09g0246471 Helianthus annuus HOM05D006846 ORTHO05D008473 5.6e-33 144.8 120 59.2
arahy.Tifrunner.gnm1.ann1.BIT0EB Arachis hypogaea HOM05D006846 ORTHO05D008473 9.5e-33 144.1 109 65.1
unitig_744.g24645 Utricularia gibba HOM05D006846 ORTHO05D008473 3.0e-31 139.0 134 54.5
TWI73G0996 Tripterygium wilfordii HOM05D006846 ORTHO05D008473 8.9e-31 137.5 159 49.7
SalBow8G5328 Salvia bowleyana HOM05D006846 ORTHO05D008473 5.4e-28 128.3 133 53.4
TPR.G27493 Trifolium pratense HOM05D006846 ORTHO05D008473 1.2e-27 127.1 90 66.7
COL.COLO4_34545 Corchorus olitorius HOM05D005582 ORTHO05D007028 7.8e-27 124.4 90 72.2
Cc03_g00240 Coffea canephora HOM05D006846 ORTHO05D008473 2.3e-26 122.9 96 63.5
Gohir.A09G242000 Gossypium hirsutum HOM05D006846 ORTHO05D008473 5.0e-26 121.7 131 55.0
Pp3c9_17660 Physcomitrium patens HOM05D006846 ORTHO05D008473 8.6e-26 120.9 120 49.2
Lsat_1_v5_gn_6_71441 Lactuca sativa HOM05D006846 ORTHO05D008473 9.5e-25 117.5 125 51.2
Nn4g26496 Nelumbo nucifera HOM05D006846 ORTHO05D008473 2.1e-24 116.3 121 54.5
TAR365G0638 Trochodendron aralioides HOM05D006846 ORTHO05D008473 2.1e-24 116.3 74 75.7
Mapoly0021s0070 Marchantia polymorpha HOM05D006846 ORTHO05D008473 6.2e-24 114.8 126 46.0
Dinv29521 Davidia involucrata HOM05D006846 ORTHO05D008473 8.0e-24 114.4 90 61.1
MBI18_g09611_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 7.5e-22 107.8 104 54.8
HPP92_004479 Vanilla planifolia HOM05D006846 ORTHO05D008473 7.5e-22 107.8 109 54.1
ATR0693G432 Amborella trichopoda HOM05D006846 ORTHO05D008473 2.4e-20 102.8 81 55.6
arahy.Tifrunner.gnm1.ann1.EYUN0W Arachis hypogaea HOM05D000385 ORTHO05D000269 1.6e-19 100.1 108 49.1
CSS0050245 Camellia sinensis var. sinensis HOM05D006846 ORTHO05D008473 2.7e-19 99.4 86 64.0
ClCG04G007450 Citrullus lanatus HOM05D006846 ORTHO05D008473 2.8e-16 89.4 72 69.4
Hma1.2p1_0013F.1_g007960 Hydrangea macrophylla HOM05D006846 ORTHO05D008473 1.4e-15 87.0 52 69.2
Glyma.09G078800 Glycine max HOM05D006846 ORTHO05D008473 8.9e-15 84.3 69 66.7
CSS0047848 Camellia sinensis var. sinensis HOM05D006846 ORTHO05D008473 1.7e-13 80.1 48 85.4
Zm00001eb158200 Zea mays HOM05D006846 ORTHO05D008473 2.2e-13 79.7 48 66.7
Cpa.g.sc146.38 Carica papaya HOM05D006846 ORTHO05D008473 4.9e-13 78.6 48 79.2
MBI19_g16347_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 1.9e-12 76.6 90 50.0
AagrBONN_evm.TU.Sc2ySwM_117.777 Anthoceros agrestis HOM05D006846 ORTHO05D008473 6.0e-11 71.6 75 46.7
Dinv18032 Davidia involucrata HOM05D006846 ORTHO05D008473 3.3e-09 65.9 84 45.2
Cre04.g216300 Chlamydomonas reinhardtii HOM05D006846 ORTHO05D008473 8.9e-07 57.8 102 37.3
Oeu055273.1 Olea europaea HOM05D025454 ORTHO05D024692 2.6e-06 56.2 36 72.2


User provided reference genes

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