Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015947 Carpinus fangiana HOM05D003898 ORTHO05D004642 6.1e-208 727.2 366 100.0
Haze_00543 Corylus avellana HOM05D003898 ORTHO05D004642 4.3e-145 518.5 313 85.9
CiPaw.06G023700 Carya illinoinensis HOM05D003898 ORTHO05D004642 1.2e-131 473.8 275 86.9
QL12p035494 Quercus lobata HOM05D003898 ORTHO05D004642 1.6e-131 473.4 275 85.5
Manes.02G157700 Manihot esculenta HOM05D003898 ORTHO05D004642 5.3e-127 458.4 276 82.6
CiPaw.05G230800 Carya illinoinensis HOM05D003898 ORTHO05D004642 1.5e-126 456.8 290 80.3
RcHm_v2.0_Chr7g0240421 Rosa chinensis HOM05D003898 ORTHO05D004642 1.0e-122 444.1 282 79.1
Potri.002G090500 Populus trichocarpa HOM05D003898 ORTHO05D004642 1.9e-121 439.9 275 79.6
TAR625G0437 Trochodendron aralioides HOM05D003898 ORTHO05D004642 1.3e-120 437.2 273 80.6
Cpa.g.sc49.114 Carica papaya HOM05D003898 ORTHO05D004642 3.6e-120 435.6 272 77.9
RcHm_v2.0_Chr1g0340891 Rosa chinensis HOM05D003898 ORTHO05D004642 1.4e-119 433.7 283 77.0
FvH4_5g38420 Fragaria vesca HOM05D003898 ORTHO05D004642 5.3e-119 431.8 275 78.2
Rhsim07G0198900 Rhododendron simsii HOM05D003898 ORTHO05D004642 9.0e-119 431.0 278 77.3
Potri.005G170600 Populus trichocarpa HOM05D003898 ORTHO05D004642 2.6e-118 429.5 275 78.5
ClCG08G010840 Citrullus lanatus HOM05D003898 ORTHO05D004642 5.8e-118 428.3 271 76.8
GSVIVG01008958001 Vitis vinifera HOM05D003898 ORTHO05D004642 9.9e-118 427.6 277 76.5
vmacro04776 Vaccinium macrocarpon HOM05D003898 ORTHO05D004642 3.8e-117 425.6 282 76.2
COL.COLO4_16517 Corchorus olitorius HOM05D003898 ORTHO05D004642 4.9e-117 425.2 272 78.3
MELO3C011378.2 Cucumis melo HOM05D003898 ORTHO05D004642 4.9e-117 425.2 278 74.5
Thecc.08G115200 Theobroma cacao HOM05D003898 ORTHO05D004642 6.4e-117 424.9 272 78.3
TAR381G1034 Trochodendron aralioides HOM05D003898 ORTHO05D004642 1.4e-116 423.7 273 78.0
Gohir.D01G182400 Gossypium hirsutum HOM05D003898 ORTHO05D004642 1.9e-116 423.3 274 78.8
Gorai.002G220000 Gossypium raimondii HOM05D003898 ORTHO05D004642 1.9e-116 423.3 274 78.8
MD08G1174000 Malus domestica HOM05D003898 ORTHO05D004642 3.2e-116 422.5 275 78.5
Sed0026073 Sechium edule HOM05D003898 ORTHO05D004642 7.1e-116 421.4 271 76.0
CsaV3_6G035700 Cucumis sativus L. HOM05D003898 ORTHO05D004642 1.2e-115 420.6 278 74.5
Prupe.1G507900 Prunus persica HOM05D003898 ORTHO05D004642 1.2e-115 420.6 282 76.2
Duzib093G1469 Durio zibethinus HOM05D003898 ORTHO05D004642 2.1e-115 419.9 272 77.9
FAN13G1941 Fragaria x ananassa HOM05D003898 ORTHO05D004642 2.1e-115 419.9 295 74.2
FvH4_7g08221 Fragaria vesca HOM05D003898 ORTHO05D004642 7.9e-115 417.9 271 77.9
FAN08G2468 Fragaria x ananassa HOM05D003898 ORTHO05D004642 7.9e-115 417.9 305 71.1
CSS0037064 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 2.3e-114 416.4 282 75.5
Gohir.A01G187300 Gossypium hirsutum HOM05D003898 ORTHO05D004642 2.3e-114 416.4 274 77.0
CAN.G47.19 Capsicum annuum HOM05D003898 ORTHO05D004642 3.9e-114 415.6 274 75.5
Dinv13069 Davidia involucrata HOM05D003898 ORTHO05D004642 6.7e-114 414.8 274 77.4
CSS0048138 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 8.7e-114 414.5 273 77.3
Sc16g0001430 Simmondsia chinensis HOM05D003898 ORTHO05D004642 1.5e-113 413.7 271 76.0
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 4.3e-113 412.1 283 74.2
MSTRG.24959 Avicennia marina HOM05D003898 ORTHO05D004642 4.3e-113 412.1 277 74.0
CANSAT25G0948 Cannabis sativa HOM05D003898 ORTHO05D004642 4.3e-113 412.1 271 76.4
Ca_02530_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 4.3e-113 412.1 273 73.3
Nitab4.5_0000425g0260 Nicotiana tabacum HOM05D003898 ORTHO05D004642 4.3e-113 412.1 274 74.8
PGSC0003DMG401016958 Solanum tuberosum HOM05D003898 ORTHO05D004642 4.3e-113 412.1 271 75.6
Peaxi162Scf00160g01643 Petunia axillaris HOM05D003898 ORTHO05D004642 1.3e-112 410.6 274 74.8
TWI12G0005 Tripterygium wilfordii HOM05D003898 ORTHO05D004642 1.6e-112 410.2 271 76.4
Ciclev10005436m.g Citrus clementina HOM05D003898 ORTHO05D004642 2.8e-112 409.5 268 78.0
Cc10_g06070 Coffea canephora HOM05D003898 ORTHO05D004642 3.7e-112 409.1 271 74.2
Aqoxy2G00480 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 4.8e-112 408.7 275 72.4
Solyc12g056840.2 Solanum lycopersicum HOM05D003898 ORTHO05D004642 1.4e-111 407.1 271 74.9
PGR044G1262 Punica granatum HOM05D003898 ORTHO05D004642 4.0e-111 405.6 270 74.4
Sopen12g029520 Solanum pennellii HOM05D003898 ORTHO05D004642 4.0e-111 405.6 270 74.8
arahy.Tifrunner.gnm1.ann1.PF76WK Arachis hypogaea HOM05D003898 ORTHO05D004642 5.3e-111 405.2 272 73.2
Medtr4g112080 Medicago truncatula HOM05D003898 ORTHO05D004642 6.9e-111 404.8 272 72.1
Sabra02G0071500 Salix brachista HOM05D003898 ORTHO05D004642 1.2e-110 404.1 288 71.5
Lalb_Chr08g0241771 Lupinus albus HOM05D003898 ORTHO05D004642 1.5e-110 403.7 276 72.1
TPR.G26798 Trifolium pratense HOM05D003898 ORTHO05D004642 2.0e-110 403.3 272 72.4
PSO210G6710 Papaver somniferum HOM05D003898 ORTHO05D004642 4.5e-110 402.1 273 74.4
SGA_v2.0_scaffold11G05890 Striga asiatica HOM05D003898 ORTHO05D004642 5.8e-110 401.7 273 73.6
Migut.C00215 Erythranthe guttata HOM05D003898 ORTHO05D004642 1.0e-109 401.0 287 70.0
Lj1g0002951 Lotus japonicus HOM05D003898 ORTHO05D004642 1.7e-109 400.2 272 73.2
arahy.Tifrunner.gnm1.ann1.HG05DD Arachis hypogaea HOM05D003898 ORTHO05D004642 2.2e-109 399.8 276 70.7
EL10Ac6g15432 Beta vulgaris HOM05D003898 ORTHO05D004642 6.5e-109 398.3 273 72.2
ECA246G0783 Erigeron canadensis HOM05D003898 ORTHO05D004642 6.5e-109 398.3 272 73.2
HanXRQChr05g0162311 Helianthus annuus HOM05D003898 ORTHO05D004642 6.5e-109 398.3 275 72.7
PSO447G0107 Papaver somniferum HOM05D003898 ORTHO05D004642 6.5e-109 398.3 273 74.0
CAN.G617.2 Capsicum annuum HOM05D003898 ORTHO05D004642 1.4e-108 397.1 274 71.2
Glyma.06G107500 Glycine max HOM05D003898 ORTHO05D004642 1.4e-108 397.1 272 70.6
THA.LOC104813137 Tarenaya hassleriana HOM05D003898 ORTHO05D004642 1.4e-108 397.1 272 72.8
Aa31LG9G14440 Aethionema arabicum HOM05D003898 ORTHO05D004642 4.2e-108 395.6 271 72.3
Medtr3g073550 Medicago truncatula HOM05D003898 ORTHO05D004642 9.3e-108 394.4 277 68.6
Lsat_1_v5_gn_6_68860 Lactuca sativa HOM05D003898 ORTHO05D004642 2.1e-107 393.3 276 72.5
TPR.G32957 Trifolium pratense HOM05D003898 ORTHO05D004642 2.1e-107 393.3 272 70.6
Lalb_Chr11g0065591 Lupinus albus HOM05D003898 ORTHO05D004642 2.7e-107 392.9 272 70.6
Nitab4.5_0006745g0040 Nicotiana tabacum HOM05D003898 ORTHO05D004642 2.7e-107 392.9 303 67.3
arahy.Tifrunner.gnm1.ann1.Z23D3B Arachis hypogaea HOM05D003898 ORTHO05D004642 3.5e-107 392.5 281 70.1
HanXRQChr01g0001161 Helianthus annuus HOM05D003898 ORTHO05D004642 6.0e-107 391.7 275 71.6
Sopen04g028670 Solanum pennellii HOM05D003898 ORTHO05D004642 6.0e-107 391.7 274 70.4
Phvul.009G026700 Phaseolus vulgaris HOM05D003898 ORTHO05D004642 1.0e-106 391.0 273 70.0
Psat5g107440 Pisum sativum HOM05D003898 ORTHO05D004642 1.0e-106 391.0 272 70.6
Glyma.04G254600 Glycine max HOM05D003898 ORTHO05D004642 2.3e-106 389.8 273 70.7
VMungo1309G1855 Vigna mungo HOM05D003898 ORTHO05D004642 2.3e-106 389.8 273 69.2
DCAR_028260 Daucus carota HOM05D003898 ORTHO05D004642 5.1e-106 388.7 268 73.1
CANSAT01G0632 Cannabis sativa HOM05D003898 ORTHO05D004642 1.1e-105 387.5 270 73.0
Thhalv10014147m.g Eutrema salsugineum HOM05D003898 ORTHO05D004642 1.9e-105 386.7 270 70.4
Carub.0001s1201 Capsella rubella HOM05D003898 ORTHO05D004642 2.5e-105 386.3 270 69.6
Sp6g40350 Schrenkiella parvula HOM05D003898 ORTHO05D004642 2.5e-105 386.3 268 71.3
CARHR012640 Cardamine hirsuta HOM05D003898 ORTHO05D004642 5.7e-105 385.2 268 70.5
A10p33510 Brassica napus HOM05D003898 ORTHO05D004642 1.1e-103 380.9 271 69.0
FAN01G1002 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.1e-103 380.9 274 73.0
Lsat_1_v5_gn_9_70200 Lactuca sativa HOM05D003898 ORTHO05D004642 3.1e-103 379.4 266 70.7
BcaNung04450 Brassica carinata HOM05D003898 ORTHO05D004642 4.1e-103 379.0 274 68.2
BraA02t04709Z Brassica rapa HOM05D003898 ORTHO05D004642 5.3e-103 378.6 284 66.9
Lj4C109T16 Lonicera japonica HOM05D003898 ORTHO05D004642 9.0e-103 377.9 294 67.3
CDE10G0849 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 1.2e-102 377.5 278 71.2
AUR62019012 Chenopodium quinoa HOM05D003898 ORTHO05D004642 2.0e-102 376.7 269 71.0
C09p74420 Brassica napus HOM05D003898 ORTHO05D004642 2.6e-102 376.3 276 67.0
arahy.Tifrunner.gnm1.ann1.K1QIEY Arachis hypogaea HOM05D003898 ORTHO05D004642 1.0e-101 374.4 314 62.1
BolC9t60175H Brassica oleracea HOM05D003898 ORTHO05D004642 1.3e-101 374.0 274 67.5
Solyc04g072480.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 2.2e-101 373.2 302 63.6
BraA10t45381Z Brassica rapa HOM05D003898 ORTHO05D004642 1.1e-100 370.9 302 62.6
AUR62027853 Chenopodium quinoa HOM05D003898 ORTHO05D004642 3.2e-100 369.4 267 71.5
AT1G12350 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 9.3e-100 367.9 270 68.5
C02p00370 Brassica napus HOM05D003898 ORTHO05D004642 2.1e-99 366.7 263 68.8
Oeu038191.1 Olea europaea HOM05D003898 ORTHO05D004642 6.1e-99 365.2 256 71.9
BcaNung06026 Brassica carinata HOM05D003898 ORTHO05D004642 1.0e-98 364.4 262 69.1
Nitab4.5_0001307g0170 Nicotiana tabacum HOM05D003898 ORTHO05D004642 1.0e-98 364.4 274 68.2
AL1G23670 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 4.3e-97 359.0 270 66.7
Os08g0176100 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 1.3e-96 357.5 277 66.4
RcHm_v2.0_Chr1g0340911 Rosa chinensis HOM05D003898 ORTHO05D004642 5.9e-94 348.6 221 78.3
Os02g0575200 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 3.2e-92 342.8 262 64.9
SalBow7G2097 Salvia bowleyana HOM05D003898 ORTHO05D004642 4.2e-92 342.4 273 65.6
Zm00001eb414730 Zea mays HOM05D003898 ORTHO05D004642 9.4e-92 341.3 277 63.9
Zm00001eb182920 Zea mays HOM05D003898 ORTHO05D004642 1.4e-90 337.4 282 60.3
HPP92_006004 Vanilla planifolia HOM05D003898 ORTHO05D004642 5.1e-90 335.5 268 63.8
MD15G1360400 Malus domestica HOM05D003898 ORTHO05D004642 1.1e-89 334.3 229 76.0
Solyc10g011840.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 3.3e-89 332.8 270 63.7
Pp3c11_3000 Physcomitrium patens HOM05D003898 ORTHO05D004642 9.7e-89 331.3 279 57.7
FvH4_5g38402 Fragaria vesca HOM05D003898 ORTHO05D004642 1.3e-88 330.9 204 77.5
Mapoly0004s0284 Marchantia polymorpha HOM05D003898 ORTHO05D004642 2.8e-88 329.7 269 59.5
FAN06G3434 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.1e-87 327.8 216 77.3
SEGI_30417 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 1.5e-86 323.9 270 61.5
Nn1g05207 Nelumbo nucifera HOM05D003898 ORTHO05D004642 1.3e-85 320.9 198 76.3
CSS0031031 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 9.4e-84 314.7 269 61.3
ATR0564G227 Amborella trichopoda HOM05D003898 ORTHO05D004642 1.8e-82 310.5 234 65.8
ClCG08G002640 Citrullus lanatus HOM05D003898 ORTHO05D004642 1.6e-78 297.4 403 46.2
AL6G11300 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 1.2e-75 287.7 182 74.2
Duzib116G0208 Durio zibethinus HOM05D003898 ORTHO05D004642 8.0e-75 285.0 273 59.3
SalBow1G7967 Salvia bowleyana HOM05D003898 ORTHO05D004642 3.0e-74 283.1 213 67.6
FAN04G1035 Fragaria x ananassa HOM05D003898 ORTHO05D004642 2.7e-70 270.0 211 69.2
PGSC0003DMG400027542 Solanum tuberosum HOM05D003898 ORTHO05D004642 8.0e-67 258.5 186 71.5
Atru.chr13.1300 Acer truncatum HOM05D003898 ORTHO05D004642 2.0e-65 253.8 170 78.8
SMO137G0130 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 1.6e-62 244.2 270 52.6
DCAR_027594 Daucus carota HOM05D003898 ORTHO05D004642 1.3e-61 241.1 215 61.9
AT5G02080 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 4.2e-60 236.1 184 65.8
CDE10G0276 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 1.2e-59 234.6 161 70.8
BolC2t06037H Brassica oleracea HOM05D003898 ORTHO05D004642 3.4e-57 226.5 175 66.9
Cre01.g048050 Chlamydomonas reinhardtii HOM05D003898 ORTHO05D004642 7.5e-57 225.3 265 47.5
SMO137G0020 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 1.3e-56 224.6 268 50.4
Psat4g046560 Pisum sativum HOM05D003898 ORTHO05D011365 2.2e-56 223.8 170 69.4
Sopen10g005660 Solanum pennellii HOM05D003898 ORTHO05D004642 2.2e-56 223.8 221 53.8
PRCOL_00003493 Prasinoderma coloniale HOM05D003898 ORTHO05D004642 2.7e-54 216.9 305 42.0
Eucgr.F04382 Eucalyptus grandis HOM05D003898 ORTHO05D004642 5.0e-53 212.6 147 73.5
AagrBONN_evm.TU.Sc2ySwM_344.1574 Anthoceros agrestis HOM05D003898 ORTHO05D004642 7.3e-52 208.8 152 63.2
FAN18G1940 Fragaria x ananassa HOM05D003898 ORTHO05D004642 9.5e-52 208.4 196 59.7
Nitab4.5_0000553g0060 Nicotiana tabacum HOM05D003898 ORTHO05D004642 1.5e-49 201.1 197 57.9
MCO09G707 Micromonas commoda HOM05D003898 ORTHO05D004642 7.5e-49 198.7 284 41.9
Ca_25770_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 1.7e-48 197.6 150 68.0
Lj4C710T9 Lonicera japonica HOM05D003898 ORTHO05D004642 3.7e-48 196.4 138 74.6
SMO137G0337 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 3.7e-48 196.4 218 49.5
Dinv44720 Davidia involucrata HOM05D003898 ORTHO05D004642 3.2e-47 193.4 131 74.0
unitig_32.g11143 Utricularia gibba HOM05D003898 ORTHO05D004642 9.2e-47 191.8 132 75.0
Cfa024377 Carpinus fangiana HOM05D003898 ORTHO05D004642 5.2e-42 176.0 291 42.3
Atru.chr13.1301 Acer truncatum HOM05D003898 ORTHO05D004642 6.4e-40 169.1 98 80.6
SEGI_10597 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 6.6e-37 159.1 149 59.1
arahy.Tifrunner.gnm1.ann1.Z5SK82 Arachis hypogaea HOM05D003898 ORTHO05D004642 1.1e-36 158.3 182 50.5
CBR_g9000 Chara braunii HOM05D003898 ORTHO05D004642 1.5e-33 147.9 120 54.2
Atru.chr1.2069 Acer truncatum HOM05D003898 ORTHO05D004642 1.3e-32 144.8 97 70.1
Atru.chr4.493 Acer truncatum HOM05D003898 ORTHO05D004642 1.3e-32 144.8 97 70.1
Duzib041G0680 Durio zibethinus HOM05D003898 ORTHO05D004642 3.7e-32 143.3 106 71.7
arahy.Tifrunner.gnm1.ann1.N7W281 Arachis hypogaea HOM05D003898 ORTHO05D004642 3.9e-29 133.3 142 52.8
unitig_32.g11144 Utricularia gibba HOM05D003898 ORTHO05D004642 4.4e-25 119.8 116 57.8
CBR_g9001 Chara braunii HOM05D003898 ORTHO05D004642 1.4e-23 114.8 113 55.8
QL10p044069 Quercus lobata HOM05D003898 ORTHO05D004642 1.4e-23 114.8 83 72.3
QL02p062685 Quercus lobata HOM05D003898 ORTHO05D004642 8.6e-21 105.5 83 69.9
arahy.Tifrunner.gnm1.ann1.9J7JQ6 Arachis hypogaea HOM05D003898 ORTHO05D004642 1.4e-18 98.2 58 75.9
QL08p011560 Quercus lobata HOM05D003898 ORTHO05D004642 1.5e-17 94.7 65 76.9
QL10p009819 Quercus lobata HOM05D003898 ORTHO05D004642 2.6e-17 94.0 67 74.6
Aqoxy480s002 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 1.6e-14 84.7 90 48.9
Ah.05g170600 Amaranthus hybridus HOM05D003898 ORTHO05D004642 3.0e-13 80.5 85 52.9
arahy.Tifrunner.gnm1.ann1.KW4E90 Arachis hypogaea HOM05D003898 ORTHO05D004642 8.7e-13 79.0 116 43.1
Aqoxy5G01116 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 5.6e-12 76.3 44 81.8
Peaxi162Scf00756g00110 Petunia axillaris HOM05D003898 ORTHO05D004642 5.6e-12 76.3 88 45.5


User provided reference genes

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