Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015910 Carpinus fangiana HOM05D003592 ORTHO05D004208 2.6e-67 258.5 119 100.0
Haze_00584 Corylus avellana HOM05D003592 ORTHO05D004208 4.0e-44 181.4 98 85.7
CiPaw.06G020500 Carya illinoinensis HOM05D003592 ORTHO05D004208 5.3e-28 127.9 93 67.7
Manes.09G123900 Manihot esculenta HOM05D003592 ORTHO05D004208 3.4e-27 125.2 91 68.1
CiPaw.05G236400 Carya illinoinensis HOM05D003592 ORTHO05D004208 6.5e-26 120.9 94 64.9
Duzib177G0010 Durio zibethinus HOM05D003592 ORTHO05D004208 1.9e-25 119.4 90 66.7
Ciclev10013115m.g Citrus clementina HOM05D003592 ORTHO05D004208 2.7e-24 115.5 90 65.6
Prupe.2G323400 Prunus persica HOM05D003592 ORTHO05D004208 4.6e-24 114.8 90 57.8
FAN03G1827 Fragaria x ananassa HOM05D003592 ORTHO05D004208 7.9e-24 114.0 91 60.4
MD07G1305300 Malus domestica HOM05D003592 ORTHO05D004208 7.9e-24 114.0 93 59.1
COL.COLO4_08909 Corchorus olitorius HOM05D003592 ORTHO05D004208 1.0e-23 113.6 87 63.2
TWI32G0722 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 1.3e-23 113.2 90 63.3
Manes.08G164900 Manihot esculenta HOM05D003592 ORTHO05D004208 1.8e-23 112.8 90 64.4
TWI34G2026 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 1.8e-23 112.8 91 61.5
Duzib106G0206 Durio zibethinus HOM05D003592 ORTHO05D004208 2.3e-23 112.5 90 61.1
FAN01G2998 Fragaria x ananassa HOM05D003592 ORTHO05D004208 2.3e-23 112.5 91 59.3
FAN10G0119 Fragaria x ananassa HOM05D003592 ORTHO05D004208 3.9e-23 111.7 91 59.3
FAN10G2200 Fragaria x ananassa HOM05D003592 ORTHO05D004208 3.9e-23 111.7 91 59.3
Potri.013G081700 Populus trichocarpa HOM05D003592 ORTHO05D004208 8.7e-23 110.5 90 60.0
FvH4_7g33540 Fragaria vesca HOM05D003592 ORTHO05D004208 1.5e-22 109.8 91 58.2
MD01G1233000 Malus domestica HOM05D003592 ORTHO05D004208 1.9e-22 109.4 89 55.1
GSVIVG01024455001 Vitis vinifera HOM05D003592 ORTHO05D004208 3.3e-22 108.6 89 61.8
Eucgr.A02956 Eucalyptus grandis HOM05D003592 ORTHO05D004208 4.3e-22 108.2 97 55.7
Gohir.A02G139000 Gossypium hirsutum HOM05D003592 ORTHO05D004208 9.7e-22 107.1 90 61.1
Gohir.D03G049600 Gossypium hirsutum HOM05D003592 ORTHO05D004208 9.7e-22 107.1 90 61.1
Gorai.003G051000 Gossypium raimondii HOM05D003592 ORTHO05D004208 9.7e-22 107.1 87 58.6
Sabra13G0071400 Salix brachista HOM05D003592 ORTHO05D004208 1.3e-21 106.7 98 55.1
Atru.chr12.2033 Acer truncatum HOM05D003592 ORTHO05D004208 1.6e-21 106.3 91 60.4
Cpa.g.sc39.41 Carica papaya HOM05D003592 ORTHO05D004208 1.6e-21 106.3 87 59.8
Ca_24466_v3 Cicer arietinum L. HOM05D003592 ORTHO05D004208 2.2e-21 105.9 90 60.0
Thecc.05G207700 Theobroma cacao HOM05D003592 ORTHO05D004208 2.2e-21 105.9 89 61.8
PGR042G3489 Punica granatum HOM05D003592 ORTHO05D004208 2.8e-21 105.5 95 56.8
Nitab4.5_0002302g0040 Nicotiana tabacum HOM05D003592 ORTHO05D004208 3.7e-21 105.1 89 60.7
RcHm_v2.0_Chr1g0383761 Rosa chinensis HOM05D003592 ORTHO05D004208 3.7e-21 105.1 99 54.5
MELO3C017620.2 Cucumis melo HOM05D003592 ORTHO05D004208 4.8e-21 104.8 93 53.8
Eucgr.L03660 Eucalyptus grandis HOM05D003592 ORTHO05D004208 8.2e-21 104.0 87 58.6
Peaxi162Scf01650g00057 Petunia axillaris HOM05D003592 ORTHO05D004208 8.2e-21 104.0 93 55.9
CsaV3_4G004470 Cucumis sativus L. HOM05D003592 ORTHO05D004208 1.1e-20 103.6 95 53.7
Duzib128G1398 Durio zibethinus HOM05D003592 ORTHO05D004208 1.1e-20 103.6 91 58.2
Eucgr.A02954 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.1e-20 103.6 87 58.6
LjContig00222g0008170 Lotus japonicus HOM05D003592 ORTHO05D004208 1.1e-20 103.6 91 61.5
CANSAT21G0974 Cannabis sativa HOM05D003592 ORTHO05D004208 1.4e-20 103.2 89 59.6
PGSC0003DMG400000541 Solanum tuberosum HOM05D003592 ORTHO05D004208 1.4e-20 103.2 120 49.2
QL09p026459 Quercus lobata HOM05D003592 ORTHO05D004208 2.4e-20 102.4 90 55.6
MBI04_g21153_MAGBIO Magnolia biondii HOM05D003592 ORTHO05D004208 3.1e-20 102.1 92 58.7
Nitab4.5_0000021g0300 Nicotiana tabacum HOM05D003592 ORTHO05D004208 4.1e-20 101.7 88 60.2
TPR.G37953 Trifolium pratense HOM05D003592 ORTHO05D004208 4.1e-20 101.7 90 60.0
Psat2g187520 Pisum sativum HOM05D003592 ORTHO05D004208 5.3e-20 101.3 95 57.9
vmacro06490 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 5.3e-20 101.3 94 59.6
MBI04_g29825_MAGBIO Magnolia biondii HOM05D000463 ORTHO05D013433 6.9e-20 100.9 90 58.9
Dinv29178 Davidia involucrata HOM05D003592 ORTHO05D004208 1.2e-19 100.1 94 58.5
Rhsim03G0219900 Rhododendron simsii HOM05D003592 ORTHO05D004208 1.5e-19 99.8 95 58.9
Sed0022386 Sechium edule HOM05D003592 ORTHO05D004208 1.5e-19 99.8 94 54.3
ClCG07G017260 Citrullus lanatus HOM05D003592 ORTHO05D004208 2.0e-19 99.4 95 54.7
AUR62005925 Chenopodium quinoa HOM05D003592 ORTHO05D004208 2.6e-19 99.0 91 57.1
AUR62018884 Chenopodium quinoa HOM05D003592 ORTHO05D004208 2.6e-19 99.0 91 58.2
Cc02_g00450 Coffea canephora HOM05D003592 ORTHO05D004208 4.5e-19 98.2 92 55.4
Cc05_g00720 Coffea canephora HOM05D003592 ORTHO05D004208 4.5e-19 98.2 92 55.4
Actinidia34296 Actinidia chinensis HOM05D003592 ORTHO05D004208 5.9e-19 97.8 89 57.3
Dinv17270 Davidia involucrata HOM05D003592 ORTHO05D004208 5.9e-19 97.8 93 58.1
TAR629G1675 Trochodendron aralioides HOM05D003592 ORTHO05D004208 5.9e-19 97.8 90 56.7
Sed0007086 Sechium edule HOM05D003592 ORTHO05D004208 1.0e-18 97.1 91 53.8
Solyc03g096840.4 Solanum lycopersicum HOM05D003592 ORTHO05D004208 1.0e-18 97.1 89 60.7
CSS0018534 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 2.2e-18 95.9 90 52.2
Medtr5g008210 Medicago truncatula HOM05D003592 ORTHO05D004208 2.2e-18 95.9 92 56.5
AT3G03150 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 5.0e-18 94.7 88 51.1
EL10Ac3g05109 Beta vulgaris HOM05D003592 ORTHO05D004208 6.5e-18 94.4 95 51.6
Migut.F00107 Erythranthe guttata HOM05D003592 ORTHO05D004208 6.5e-18 94.4 86 55.8
Sopen03g027580 Solanum pennellii HOM05D003592 ORTHO05D004208 8.5e-18 94.0 114 50.0
SGA_v2.0_scaffold165G38224 Striga asiatica HOM05D003592 ORTHO05D004208 8.5e-18 94.0 90 54.4
VMungo1215G0435 Vigna mungo HOM05D003592 ORTHO05D004208 8.5e-18 94.0 94 54.3
AL3G12760 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 1.1e-17 93.6 88 51.1
arahy.Tifrunner.gnm1.ann1.I6057L Arachis hypogaea HOM05D003592 ORTHO05D004208 1.1e-17 93.6 92 55.4
CARHR196060 Cardamine hirsuta HOM05D003592 ORTHO05D004208 1.1e-17 93.6 87 49.4
Glyma.01G230200 Glycine max HOM05D003592 ORTHO05D004208 1.1e-17 93.6 105 51.4
AT5G17165 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 1.4e-17 93.2 87 52.9
arahy.Tifrunner.gnm1.ann1.F45BIC Arachis hypogaea HOM05D003592 ORTHO05D004208 1.4e-17 93.2 92 55.4
CSS0031198 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 1.4e-17 93.2 91 52.7
SalBow2G2852 Salvia bowleyana HOM05D003592 ORTHO05D004208 1.4e-17 93.2 87 56.3
Actinidia08730 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.9e-17 92.8 93 57.0
Aqoxy161s001 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 2.5e-17 92.4 88 53.4
Aqoxy161s002 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 2.5e-17 92.4 88 53.4
Aqoxy3G02065 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 2.5e-17 92.4 88 53.4
Aqoxy3G02066 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 2.5e-17 92.4 88 53.4
Hma1.2p1_1235F.1_g269160 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 2.5e-17 92.4 90 54.4
Ah.13g071180 Amaranthus hybridus HOM05D003592 ORTHO05D004208 3.2e-17 92.0 93 58.1
MSTRG.8553 Avicennia marina HOM05D003592 ORTHO05D004208 3.2e-17 92.0 87 55.2
CAN.G303.68 Capsicum annuum HOM05D003592 ORTHO05D004208 3.2e-17 92.0 112 45.5
Eucgr.K00100 Eucalyptus grandis HOM05D003592 ORTHO05D004208 3.2e-17 92.0 98 50.0
Oeu061060.1 Olea europaea HOM05D003592 ORTHO05D004208 3.2e-17 92.0 90 55.6
Oeu063742.2 Olea europaea HOM05D003592 ORTHO05D004208 3.2e-17 92.0 87 54.0
BcaC01g04411 Brassica carinata HOM05D003592 ORTHO05D004208 4.2e-17 91.7 96 45.8
Rhsim09G0211800 Rhododendron simsii HOM05D003592 ORTHO05D004208 4.2e-17 91.7 88 56.8
THA.LOC104827220 Tarenaya hassleriana HOM05D003592 ORTHO05D004208 4.2e-17 91.7 91 50.5
Migut.F00955 Erythranthe guttata HOM05D003592 ORTHO05D004208 5.5e-17 91.3 91 54.9
BcaC04g18828 Brassica carinata HOM05D003592 ORTHO05D004208 7.2e-17 90.9 94 48.9
BolC9t58839H Brassica oleracea HOM05D003592 ORTHO05D004208 7.2e-17 90.9 94 48.9
CsaV3_5G005170 Cucumis sativus L. HOM05D003592 ORTHO05D004208 7.2e-17 90.9 110 47.3
Sc13g0010720 Simmondsia chinensis HOM05D003592 ORTHO05D004208 7.2e-17 90.9 97 51.5
Oeu038117.1 Olea europaea HOM05D003592 ORTHO05D004208 9.4e-17 90.5 90 53.3
AUR62028136 Chenopodium quinoa HOM05D003592 ORTHO05D004208 1.2e-16 90.1 83 59.0
SGA_v2.0_scaffold18G08501 Striga asiatica HOM05D003592 ORTHO05D004208 1.2e-16 90.1 86 54.7
Aa31LG5G13630 Aethionema arabicum HOM05D003592 ORTHO05D004208 1.6e-16 89.7 87 48.3
ATR0829G020 Amborella trichopoda HOM05D003592 ORTHO05D004208 1.6e-16 89.7 91 49.5
MSTRG.14 Avicennia marina HOM05D003592 ORTHO05D004208 1.6e-16 89.7 89 51.7
Carub.0003s0230 Capsella rubella HOM05D003592 ORTHO05D004208 1.6e-16 89.7 88 51.1
BcaB04g19374 Brassica carinata HOM05D003592 ORTHO05D004208 2.7e-16 89.0 96 43.8
CARHR077170 Cardamine hirsuta HOM05D003592 ORTHO05D004208 2.7e-16 89.0 87 49.4
C03p40480 Brassica napus HOM05D003592 ORTHO05D004208 3.6e-16 88.6 85 49.4
BolC3t16311H Brassica oleracea HOM05D003592 ORTHO05D004208 3.6e-16 88.6 85 49.4
Phvul.002G036900 Phaseolus vulgaris HOM05D003592 ORTHO05D004208 3.6e-16 88.6 108 49.1
BcaB08g36801 Brassica carinata HOM05D003592 ORTHO05D004208 4.6e-16 88.2 87 49.4
A03p33220 Brassica napus HOM05D003592 ORTHO05D004208 4.6e-16 88.2 85 49.4
BraA03t12494Z Brassica rapa HOM05D003592 ORTHO05D004208 4.6e-16 88.2 85 49.4
MELO3C005442.2 Cucumis melo HOM05D003592 ORTHO05D004208 4.6e-16 88.2 97 49.5
AL6G28210 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 6.1e-16 87.8 87 49.4
Hund21085 Selenicereus undatus HOM05D003592 ORTHO05D004208 7.9e-16 87.4 93 51.6
vmacro10180 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 7.9e-16 87.4 92 52.2
A10p22230 Brassica napus HOM05D003592 ORTHO05D004208 1.0e-15 87.0 87 47.1
BraA10t44282Z Brassica rapa HOM05D003592 ORTHO05D004208 1.0e-15 87.0 87 47.1
Ah.04g157330 Amaranthus hybridus HOM05D003592 ORTHO05D004208 2.3e-15 85.9 91 53.8
Oeu055446.1 Olea europaea HOM05D003592 ORTHO05D004208 2.3e-15 85.9 86 51.2
BcaC05g30524 Brassica carinata HOM05D003592 ORTHO05D004208 3.0e-15 85.5 88 50.0
C05p63660 Brassica napus HOM05D003592 ORTHO05D004208 3.0e-15 85.5 88 50.0
BolC5t35035H Brassica oleracea HOM05D003592 ORTHO05D004208 3.0e-15 85.5 88 50.0
Carub.0006s1535 Capsella rubella HOM05D003592 ORTHO05D004208 3.0e-15 85.5 87 47.1
ClCG01G004940 Citrullus lanatus HOM05D003592 ORTHO05D004208 3.0e-15 85.5 94 48.9
Glyma.11G013200 Glycine max HOM05D003592 ORTHO05D004208 3.0e-15 85.5 96 51.0
Actinidia28268 Actinidia chinensis HOM05D003592 ORTHO05D004208 3.9e-15 85.1 94 52.1
MSTRG.26939 Avicennia marina HOM05D003592 ORTHO05D004208 5.1e-15 84.7 83 54.2
Thhalv10021768m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 6.7e-15 84.3 88 44.3
Sed0022343 Sechium edule HOM05D003592 ORTHO05D004208 6.7e-15 84.3 81 53.1
DCAR_010550 Daucus carota HOM05D003592 ORTHO05D004208 8.8e-15 84.0 90 52.2
A05p44040 Brassica napus HOM05D003592 ORTHO05D004208 1.1e-14 83.6 88 48.9
BraSC90t46707Z Brassica rapa HOM05D003592 ORTHO05D004208 1.1e-14 83.6 88 48.9
Peaxi162Scf00815g00250 Petunia axillaris HOM05D003592 ORTHO05D004208 1.5e-14 83.2 84 51.2
Sp3g02190 Schrenkiella parvula HOM05D003592 ORTHO05D004208 1.5e-14 83.2 87 46.0
Sed0014997 Sechium edule HOM05D003592 ORTHO05D004208 1.5e-14 83.2 85 44.7
PGR142G3032 Punica granatum HOM05D003592 ORTHO05D004208 2.0e-14 82.8 81 51.9
PGSC0003DMG400027031 Solanum tuberosum HOM05D003592 ORTHO05D004208 2.0e-14 82.8 96 52.1
Sp6g27060 Schrenkiella parvula HOM05D003592 ORTHO05D004208 2.5e-14 82.4 83 47.0
Sc19g0000280 Simmondsia chinensis HOM05D003592 ORTHO05D004208 7.4e-14 80.9 91 48.4
Actinidia18695 Actinidia chinensis HOM05D003592 ORTHO05D004208 9.7e-14 80.5 87 52.9
CDE01G0008 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 9.7e-14 80.5 86 48.8
Nn3g19269 Nelumbo nucifera HOM05D003592 ORTHO05D004208 1.3e-13 80.1 91 50.5
unitig_62.g23842 Utricularia gibba HOM05D003592 ORTHO05D004208 1.3e-13 80.1 86 50.0
Lsat_1_v5_gn_0_9420 Lactuca sativa HOM05D003592 ORTHO05D004208 2.2e-13 79.3 91 49.5
SEGI_20020 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 2.2e-13 79.3 102 43.1
Zm00001eb430170 Zea mays HOM05D003592 ORTHO05D004208 2.2e-13 79.3 102 46.1
Peaxi162Scf00133g00111 Petunia axillaris HOM05D003592 ORTHO05D004208 4.8e-13 78.2 97 43.3
HanXRQChr09g0257211 Helianthus annuus HOM05D003592 ORTHO05D004208 8.2e-13 77.4 91 48.4
PGSC0003DMG400026933 Solanum tuberosum HOM05D003592 ORTHO05D004208 8.2e-13 77.4 87 49.4
Peaxi162Scf00815g00235 Petunia axillaris HOM05D003592 ORTHO05D004208 1.1e-12 77.0 87 49.4
Nitab4.5_0006270g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.8e-12 76.3 89 50.6
Os04g0598000 Oryza sativa ssp. japonica HOM05D003592 ORTHO05D004208 1.8e-12 76.3 90 50.0
C09p60040 Brassica napus HOM05D003592 ORTHO05D004208 3.1e-12 75.5 87 44.8
Hund09766 Selenicereus undatus HOM05D003592 ORTHO05D004208 4.1e-12 75.1 91 50.5
CDE12G0763 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 5.3e-12 74.7 88 45.5
Thhalv10017419m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 6.9e-12 74.3 87 40.2
SEGI_37277 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 6.9e-12 74.3 98 40.8
TAR375G0874 Trochodendron aralioides HOM05D003592 ORTHO05D004208 6.9e-12 74.3 86 46.5
Hma1.2p1_0758F.1_g213540 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 9.1e-12 73.9 89 46.1
CDE11G0498 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 1.2e-11 73.6 107 44.9
Nn1g02028 Nelumbo nucifera HOM05D003592 ORTHO05D004208 1.2e-11 73.6 80 48.8
ECA232G0247 Erigeron canadensis HOM05D003592 ORTHO05D004208 1.5e-11 73.2 91 48.4
Nitab4.5_0000115g0310 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.5e-11 73.2 87 46.0
Sopen06g029230 Solanum pennellii HOM05D003592 ORTHO05D004208 1.5e-11 73.2 90 48.9
HPP92_014744 Vanilla planifolia HOM05D003592 ORTHO05D004208 1.5e-11 73.2 93 47.3
Solyc06g072840.3 Solanum lycopersicum HOM05D003592 ORTHO05D004208 2.0e-11 72.8 86 50.0
HanXRQChr02g0041191 Helianthus annuus HOM05D003592 ORTHO05D004208 3.4e-11 72.0 90 48.9
Sopen06g029220 Solanum pennellii HOM05D003592 ORTHO05D004208 3.4e-11 72.0 86 47.7
unitig_0.g1634 Utricularia gibba HOM05D003592 ORTHO05D004208 4.5e-11 71.6 86 40.7
Solyc06g072845.1 Solanum lycopersicum HOM05D003592 ORTHO05D004208 5.9e-11 71.2 95 48.4
PSO063G2386 Papaver somniferum HOM05D003592 ORTHO05D004208 3.8e-10 68.6 85 43.5
Nitab4.5_0000115g0330 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.1e-09 67.0 89 48.3
HPP92_020881 Vanilla planifolia HOM05D003592 ORTHO05D004208 2.5e-09 65.9 91 42.9
HPP92_020885 Vanilla planifolia HOM05D003592 ORTHO05D004208 2.5e-09 65.9 91 42.9
SEGI_00089 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 1.6e-08 63.2 91 38.5
Nitab4.5_0003012g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 2.1e-08 62.8 86 43.0
Actinidia08732 Actinidia chinensis HOM05D003592 ORTHO05D004208 2.7e-08 62.4 62 50.0
CDE02G0247 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 7.9e-08 60.8 99 40.4
HPP92_014706 Vanilla planifolia HOM05D003592 ORTHO05D004208 7.9e-08 60.8 79 43.0
PSO170G2965 Papaver somniferum HOM05D003592 ORTHO05D004208 1.4e-07 60.1 85 40.0
SEGI_16015 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 6.7e-07 57.8 86 36.0
HanXRQChr05g0137871 Helianthus annuus HOM05D003592 ORTHO05D029303 1.5e-06 56.6 89 42.7


User provided reference genes

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