Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015892 Carpinus fangiana HOM05D006369 ORTHO05D007764 5.9e-161 570.9 296 100.0
CiPaw.05G237500 Carya illinoinensis HOM05D006369 ORTHO05D007764 7.6e-92 341.3 252 75.4
CiPaw.06G019700 Carya illinoinensis HOM05D006369 ORTHO05D007764 1.7e-88 330.1 243 74.9
Haze_00598 Corylus avellana HOM05D006369 ORTHO05D007764 1.6e-86 323.6 208 86.1
Dinv29169 Davidia involucrata HOM05D006369 ORTHO05D007764 2.2e-75 286.6 243 65.4
RcHm_v2.0_Chr1g0383921 Rosa chinensis HOM05D006369 ORTHO05D007764 5.5e-74 282.0 247 67.6
Manes.08G163800 Manihot esculenta HOM05D006369 ORTHO05D007764 2.7e-73 279.6 236 67.8
Prupe.2G324400 Prunus persica HOM05D006369 ORTHO05D007764 1.8e-72 276.9 243 65.0
FAN01G2653 Fragaria x ananassa HOM05D006369 ORTHO05D007764 1.9e-71 273.5 241 67.6
FvH4_7g33790 Fragaria vesca HOM05D006369 ORTHO05D007764 2.5e-71 273.1 241 67.6
Ciclev10021854m.g Citrus clementina HOM05D006369 ORTHO05D007764 2.1e-70 270.0 213 73.2
FAN10G1961 Fragaria x ananassa HOM05D006369 ORTHO05D007764 2.1e-70 270.0 241 66.4
FAN10G2535 Fragaria x ananassa HOM05D006369 ORTHO05D007764 2.1e-70 270.0 241 66.4
Atru.chr7.1119 Acer truncatum HOM05D006369 ORTHO05D007764 2.8e-70 269.6 246 64.6
FAN03G1142 Fragaria x ananassa HOM05D006369 ORTHO05D007764 6.2e-70 268.5 241 66.0
FAN03G2967 Fragaria x ananassa HOM05D006369 ORTHO05D007764 6.2e-70 268.5 241 66.0
Actinidia00694 Actinidia chinensis HOM05D006369 ORTHO05D007764 4.5e-68 262.3 240 62.9
TAR365G0740 Trochodendron aralioides HOM05D006369 ORTHO05D007764 1.0e-67 261.2 244 61.5
MD07G1306400 Malus domestica HOM05D006369 ORTHO05D007764 3.2e-66 256.1 240 61.2
CSS0035893 Camellia sinensis var. sinensis HOM05D006369 ORTHO05D007764 7.1e-66 255.0 258 58.5
Thecc.03G000800 Theobroma cacao HOM05D006369 ORTHO05D007764 7.1e-66 255.0 214 69.2
MD01G1234200 Malus domestica HOM05D006369 ORTHO05D007764 1.3e-64 250.8 241 62.2
GSVIVG01024423001 Vitis vinifera HOM05D006369 ORTHO05D007764 8.7e-64 248.1 231 62.3
MELO3C024871.2 Cucumis melo HOM05D006369 ORTHO05D007764 5.7e-63 245.4 244 60.2
Nn3g21321 Nelumbo nucifera HOM05D006369 ORTHO05D007764 6.3e-62 241.9 257 56.8
Potri.019G052400 Populus trichocarpa HOM05D006369 ORTHO05D007764 8.2e-62 241.5 250 59.2
CsaV3_4G008720 Cucumis sativus L. HOM05D006369 ORTHO05D007764 1.8e-61 240.4 246 59.8
Hund18049 Selenicereus undatus HOM05D006369 ORTHO05D007764 3.1e-61 239.6 251 56.2
ClCG10G009050 Citrullus lanatus HOM05D006369 ORTHO05D007764 4.1e-61 239.2 248 58.5
Duzib211G0044 Durio zibethinus HOM05D006369 ORTHO05D007764 4.1e-61 239.2 235 60.9
Gorai.001G204600 Gossypium raimondii HOM05D006369 ORTHO05D007764 6.9e-61 238.4 218 67.0
Lj1A1033G61 Lonicera japonica HOM05D006369 ORTHO05D007764 6.9e-61 238.4 242 60.3
Cc02_g00390 Coffea canephora HOM05D006369 ORTHO05D007764 9.0e-61 238.0 237 58.6
CANSAT21G0373 Cannabis sativa HOM05D006369 ORTHO05D007764 1.5e-60 237.3 221 64.7
Gohir.A07G176900 Gossypium hirsutum HOM05D006369 ORTHO05D007764 2.6e-60 236.5 219 65.8
Sed0025457 Sechium edule HOM05D006369 ORTHO05D007764 2.6e-60 236.5 246 56.9
Gohir.D07G184401 Gossypium hirsutum HOM05D006369 ORTHO05D007764 1.0e-59 234.6 218 66.1
Glyma.12G018800 Glycine max HOM05D006369 ORTHO05D007764 8.5e-59 231.5 242 56.2
MSTRG.8579 Avicennia marina HOM05D006369 ORTHO05D007764 1.4e-58 230.7 240 56.2
Aqoxy2G03109 Aquilegia oxysepala HOM05D006369 ORTHO05D007764 1.9e-58 230.3 245 55.5
Lalb_Chr19g0139881 Lupinus albus HOM05D006369 ORTHO05D007764 1.9e-58 230.3 194 67.5
EL10Ac7g17391 Beta vulgaris HOM05D006369 ORTHO05D007764 2.5e-58 229.9 250 54.0
BcaNung00427 Brassica carinata HOM05D006369 ORTHO05D007764 4.2e-58 229.2 254 55.9
THA.LOC104820876 Tarenaya hassleriana HOM05D006369 ORTHO05D007764 7.2e-58 228.4 252 57.1
vmacro02505 Vaccinium macrocarpon HOM05D006369 ORTHO05D007764 2.7e-57 226.5 281 52.3
Ca_04928_v3 Cicer arietinum L. HOM05D006369 ORTHO05D007764 3.6e-57 226.1 242 54.5
C02p08760 Brassica napus HOM05D006369 ORTHO05D007764 4.6e-57 225.7 259 54.1
Nitab4.5_0000820g0010 Nicotiana tabacum HOM05D006369 ORTHO05D007764 1.3e-56 224.2 211 62.6
Phvul.011G021200 Phaseolus vulgaris HOM05D006369 ORTHO05D007764 1.8e-56 223.8 214 62.1
CARHR196110 Cardamine hirsuta HOM05D006369 ORTHO05D007764 2.3e-56 223.4 249 55.4
BcaC03g18532 Brassica carinata HOM05D006369 ORTHO05D007764 5.1e-56 222.2 261 53.3
BolC2t06790H Brassica oleracea HOM05D006369 ORTHO05D007764 5.1e-56 222.2 261 53.3
Migut.F00102 Erythranthe guttata HOM05D006369 ORTHO05D007764 5.1e-56 222.2 245 55.9
Glyma.11G092500 Glycine max HOM05D006369 ORTHO05D007764 6.7e-56 221.9 215 60.9
A02p03940 Brassica napus HOM05D006369 ORTHO05D007764 8.7e-56 221.5 227 57.7
Thhalv10014449m.g Eutrema salsugineum HOM05D006369 ORTHO05D007764 8.7e-56 221.5 228 58.3
BraA02t05358Z Brassica rapa HOM05D006369 ORTHO05D007764 2.5e-55 219.9 228 57.9
Psat7g171520 Pisum sativum HOM05D006369 ORTHO05D007764 7.4e-55 218.4 246 53.3
VMungo1127G0993 Vigna mungo HOM05D006369 ORTHO05D007764 1.6e-54 217.2 223 58.7
BcaB01g04960 Brassica carinata HOM05D006369 ORTHO05D007764 2.8e-54 216.5 250 55.6
arahy.Tifrunner.gnm1.ann1.WFP97B Arachis hypogaea HOM05D006369 ORTHO05D007764 3.7e-54 216.1 273 50.9
Ah.08g212670 Amaranthus hybridus HOM05D006369 ORTHO05D007764 6.3e-54 215.3 214 58.9
Sp6g27090 Schrenkiella parvula HOM05D006369 ORTHO05D007764 8.2e-54 214.9 233 56.2
Aa31LG11G12610 Aethionema arabicum HOM05D006369 ORTHO05D007764 1.8e-53 213.8 229 57.6
Nitab4.5_0000001g0150 Nicotiana tabacum HOM05D006369 ORTHO05D007764 2.0e-52 210.3 210 61.0
Carub.0006s1525 Capsella rubella HOM05D006369 ORTHO05D007764 3.4e-52 209.5 232 56.9
HanXRQChr17g0541681 Helianthus annuus HOM05D006369 ORTHO05D007764 1.3e-51 207.6 243 53.1
arahy.Tifrunner.gnm1.ann1.F9R2PF Arachis hypogaea HOM05D006369 ORTHO05D007764 1.7e-51 207.2 288 48.3
Lj3g0017971 Lotus japonicus HOM05D006369 ORTHO05D007764 2.9e-51 206.5 236 53.8
AT5G17070 Arabidopsis thaliana HOM05D006369 ORTHO05D007764 3.8e-51 206.1 202 58.9
AL6G28090 Arabidopsis lyrata HOM05D006369 ORTHO05D007764 8.5e-51 204.9 186 62.9
MBI06_g08525_MAGBIO Magnolia biondii HOM05D006369 ORTHO05D007764 1.1e-50 204.5 219 57.1
SalBow4G3280 Salvia bowleyana HOM05D006369 ORTHO05D007764 1.4e-50 204.1 245 50.2
CAN.G317.12 Capsicum annuum HOM05D006369 ORTHO05D007764 7.2e-50 201.8 201 58.2
SGA_v2.0_scaffold18G08505 Striga asiatica HOM05D006369 ORTHO05D007764 9.4e-50 201.4 290 44.5
Lsat_1_v5_gn_3_37940 Lactuca sativa HOM05D006369 ORTHO05D007764 4.6e-49 199.1 218 54.1
PGR042G2784 Punica granatum HOM05D006369 ORTHO05D007764 4.6e-49 199.1 232 53.9
Solyc03g062680.3 Solanum lycopersicum HOM05D006369 ORTHO05D007764 1.4e-48 197.6 211 58.3
Sopen03g015000 Solanum pennellii HOM05D006369 ORTHO05D007764 3.0e-48 196.4 211 58.3
Medtr4g077610 Medicago truncatula HOM05D006369 ORTHO05D007764 2.0e-47 193.7 216 53.7
Eucgr.A02962 Eucalyptus grandis HOM05D006369 ORTHO05D007764 1.3e-46 191.0 198 57.1
TPR.G39567 Trifolium pratense HOM05D006369 ORTHO05D007764 1.7e-46 190.7 254 50.0
Peaxi162Scf00076g00928 Petunia axillaris HOM05D006369 ORTHO05D007764 6.3e-46 188.7 281 45.6
Oeu005324.1 Olea europaea HOM05D006369 ORTHO05D007764 4.1e-45 186.0 172 62.8
Sc05g0004440 Simmondsia chinensis HOM05D006369 ORTHO05D007764 9.1e-45 184.9 170 61.8
Rhsim13G0016700 Rhododendron simsii HOM05D006369 ORTHO05D007764 5.0e-43 179.1 282 44.3
DCAR_020401 Daucus carota HOM05D006369 ORTHO05D007764 1.4e-42 177.6 253 50.2
ECA246G2850 Erigeron canadensis HOM05D006369 ORTHO05D007764 2.5e-42 176.8 223 49.3
PSO210G6912 Papaver somniferum HOM05D006369 ORTHO05D007764 3.2e-42 176.4 209 53.6
PSO170G0520 Papaver somniferum HOM05D006369 ORTHO05D007764 4.2e-42 176.0 209 53.6
Psat1g047200 Pisum sativum HOM05D006369 ORTHO05D007764 5.5e-42 175.6 144 63.9
Psat1g047280 Pisum sativum HOM05D006369 ORTHO05D007764 3.6e-41 172.9 135 66.7
Psat1g047240 Pisum sativum HOM05D006369 ORTHO05D007764 6.3e-38 162.2 128 65.6
CDE02G3455 Ceratophyllum demersum HOM05D006369 ORTHO05D007764 1.2e-36 157.9 229 45.9
HPP92_026820 Vanilla planifolia HOM05D006369 ORTHO05D007764 2.0e-36 157.1 219 50.2
Os06g0300700 Oryza sativa ssp. japonica HOM05D006369 ORTHO05D007764 2.6e-36 156.8 203 47.8
BraA03t10137Z Brassica rapa HOM05D006369 ORTHO05D007764 1.5e-34 151.0 169 55.6
SEGI_01011 Sequoiadendron giganteum HOM05D006369 ORTHO05D007764 9.4e-34 148.3 136 58.8
COL.COLO4_13442 Corchorus olitorius HOM05D006369 ORTHO05D007764 2.8e-30 136.7 182 50.0
ATR0213G006 Amborella trichopoda HOM05D006369 ORTHO05D007764 4.8e-30 136.0 189 49.7
unitig_747.g21708 Utricularia gibba HOM05D006369 ORTHO05D007764 6.3e-30 135.6 267 39.3
Zm00001eb381130 Zea mays HOM05D006369 ORTHO05D007764 1.8e-29 134.0 192 46.9
Dinv06133 Davidia involucrata HOM05D006369 ORTHO05D007764 3.8e-27 126.3 105 62.9
CBR_g17900 Chara braunii HOM05D006369 ORTHO05D007764 1.5e-23 114.4 164 43.9
Hma1.2p1_1235F.1_g269100 Hydrangea macrophylla HOM05D006369 ORTHO05D007764 1.7e-22 110.9 148 51.4
AagrBONN_evm.TU.Sc2ySwM_344.1770 Anthoceros agrestis HOM05D006369 ORTHO05D007764 2.8e-22 110.2 230 36.5
Pp3c20_5600 Physcomitrium patens HOM05D006369 ORTHO05D007764 2.0e-20 104.0 199 39.7
Mapoly0084s0069 Marchantia polymorpha HOM05D006369 ORTHO05D007764 4.5e-20 102.8 187 38.5
C03p09390 Brassica napus HOM05D006369 ORTHO05D007764 4.2e-18 96.3 112 58.0
BcaB01g05232 Brassica carinata HOM05D006369 ORTHO05D007764 2.1e-17 94.0 112 57.1
RcHm_v2.0_Chr5g0041771 Rosa chinensis HOM05D006369 ORTHO05D007764 2.3e-16 90.5 64 71.9
BolC3t13440H Brassica oleracea HOM05D006369 ORTHO05D007764 4.0e-16 89.7 103 58.3
SMO141G0301 Selaginella moellendorffii HOM05D006369 ORTHO05D007764 5.2e-16 89.4 148 38.5
Sabra19G0056300 Salix brachista HOM05D006369 ORTHO05D007764 2.0e-15 87.4 96 57.3
A03p08120 Brassica napus HOM05D006369 ORTHO05D007764 3.5e-12 76.6 168 41.1
Cpa.g.sc39.77 Carica papaya HOM05D006369 ORTHO05D007764 2.9e-11 73.6 50 74.0
Sabra19G0056100 Salix brachista HOM05D006369 ORTHO05D007764 6.6e-11 72.4 85 48.2
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 3.3e-10 70.1 52 67.3
Cre10.g463700 Chlamydomonas reinhardtii HOM05D006369 ORTHO05D007764 4.7e-09 66.2 145 34.5
Sabra19G0056200 Salix brachista HOM05D006369 ORTHO05D007764 2.3e-08 63.9 44 77.3
PGSC0003DMG402008641 Solanum tuberosum HOM05D006369 ORTHO05D007764 4.0e-08 63.2 44 63.6
PGSC0003DMG401008641 Solanum tuberosum HOM05D006369 ORTHO05D007764 2.0e-07 60.8 98 46.9


User provided reference genes

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