Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015866 Carpinus fangiana HOM05D007903 ORTHO05D009925 1.1e-81 306.6 158 100.0
Haze_00633 Corylus avellana HOM05D007903 ORTHO05D009925 2.7e-72 275.4 158 90.5
CiPaw.05G239700 Carya illinoinensis HOM05D007903 ORTHO05D009925 4.4e-54 214.9 170 73.5
QL01p040711 Quercus lobata HOM05D007903 ORTHO05D009925 3.6e-48 195.3 139 76.3
Potri.008G122700 Populus trichocarpa HOM05D007903 ORTHO05D009925 6.1e-48 194.5 162 66.0
Hma1.2p1_1875F.1_g306260 Hydrangea macrophylla HOM05D007903 ORTHO05D009925 3.4e-46 188.7 161 62.1
CSS0015489 Camellia sinensis var. sinensis HOM05D007903 ORTHO05D009925 2.2e-45 186.0 161 64.6
Potri.010G122600 Populus trichocarpa HOM05D007903 ORTHO05D009925 7.2e-41 171.0 164 61.0
TAR374G1449 Trochodendron aralioides HOM05D007903 ORTHO05D009925 1.6e-40 169.9 162 56.2
Sabra08G0093200 Salix brachista HOM05D007903 ORTHO05D009925 3.0e-39 165.6 146 63.7
Hma1.2p1_2787F.1_g328510 Hydrangea macrophylla HOM05D007903 ORTHO05D009925 2.6e-38 162.5 137 62.8
Manes.14G104700 Manihot esculenta HOM05D007903 ORTHO05D009925 2.6e-38 162.5 163 59.5
Aqoxy3G00252 Aquilegia oxysepala HOM05D007903 ORTHO05D009925 4.4e-38 161.8 166 55.4
Thecc.02G225400 Theobroma cacao HOM05D007903 ORTHO05D009925 9.8e-38 160.6 164 59.1
Duzib268G0450 Durio zibethinus HOM05D007903 ORTHO05D009925 2.2e-37 159.5 169 60.4
Sabra10G0092700 Salix brachista HOM05D007903 ORTHO05D009925 8.3e-37 157.5 165 57.6
Ciclev10017603m.g Citrus clementina HOM05D007903 ORTHO05D009925 2.0e-35 152.9 174 55.2
Nn4g23903 Nelumbo nucifera HOM05D007903 ORTHO05D009925 3.5e-35 152.1 172 50.6
MD16G1040300 Malus domestica HOM05D007903 ORTHO05D009925 6.6e-34 147.9 164 56.1
Lj5g0001705 Lotus japonicus HOM05D007903 ORTHO05D009925 5.6e-33 144.8 169 52.7
MD13G1039400 Malus domestica HOM05D007903 ORTHO05D009925 5.6e-33 144.8 165 55.2
CSS0009081 Camellia sinensis var. sinensis HOM05D007903 ORTHO05D009925 2.8e-32 142.5 151 55.6
PGSC0003DMG400006002 Solanum tuberosum HOM05D007903 ORTHO05D009925 4.7e-32 141.7 167 50.3
Prupe.1G313800 Prunus persica HOM05D007903 ORTHO05D009925 8.0e-32 141.0 167 53.3
Gohir.A09G042700 Gossypium hirsutum HOM05D007903 ORTHO05D009925 2.6e-30 136.0 167 50.9
Gohir.D09G043400 Gossypium hirsutum HOM05D007903 ORTHO05D009925 1.1e-28 130.6 172 50.0
Gorai.006G050300 Gossypium raimondii HOM05D007903 ORTHO05D009925 1.1e-28 130.6 172 50.0
PGR119G1971 Punica granatum HOM05D007903 ORTHO05D009925 1.1e-28 130.6 165 52.7
TWI31G0067 Tripterygium wilfordii HOM05D007903 ORTHO05D009925 2.4e-28 129.4 162 51.9
Lalb_Chr06g0165971 Lupinus albus HOM05D007903 ORTHO05D009925 1.2e-27 127.1 160 48.8
CSS0036148 Camellia sinensis var. sinensis HOM05D007903 ORTHO05D009925 2.0e-27 126.3 150 51.3
RcHm_v2.0_Chr4g0434841 Rosa chinensis HOM05D007903 ORTHO05D009925 2.7e-27 125.9 170 48.8
Oeu057730.1 Olea europaea HOM05D007903 ORTHO05D009925 7.8e-27 124.4 162 47.5
FAN12G2568 Fragaria x ananassa HOM05D007903 ORTHO05D009925 1.0e-26 124.0 172 47.7
FvH4_4g27040 Fragaria vesca HOM05D007903 ORTHO05D009925 1.3e-26 123.6 172 47.1
FAN12G1984 Fragaria x ananassa HOM05D007903 ORTHO05D009925 1.3e-26 123.6 172 47.1
VMungo0720G0077 Vigna mungo HOM05D007903 ORTHO05D009925 6.6e-26 121.3 163 48.5
FAN07G0160 Fragaria x ananassa HOM05D007903 ORTHO05D009925 5.6e-25 118.2 169 45.0
Solyc04g007360.1 Solanum lycopersicum HOM05D007903 ORTHO05D009925 5.6e-25 118.2 164 42.7
CsaV3_5G034450 Cucumis sativus L. HOM05D007903 ORTHO05D009925 9.5e-25 117.5 145 46.9
ClCG05G022570 Citrullus lanatus HOM05D007903 ORTHO05D009925 1.2e-24 117.1 136 47.1
FAN22G0942 Fragaria x ananassa HOM05D007903 ORTHO05D009925 2.8e-24 115.9 173 44.5
DCAR_030171 Daucus carota HOM05D007903 ORTHO05D009925 4.7e-24 115.2 166 43.4
TWI79G1550 Tripterygium wilfordii HOM05D007903 ORTHO05D009925 6.2e-24 114.8 146 50.7
CAN.G25.18 Capsicum annuum HOM05D007903 ORTHO05D009925 1.0e-23 114.0 171 45.6
Peaxi162Scf00564g00039 Petunia axillaris HOM05D007903 ORTHO05D009925 1.4e-23 113.6 127 48.8
FAN17G2767 Fragaria x ananassa HOM05D007903 ORTHO05D009925 3.1e-23 112.5 171 44.4
THA.LOC104821918 Tarenaya hassleriana HOM05D007903 ORTHO05D009925 4.0e-23 112.1 161 45.3
Thhalv10019802m.g Eutrema salsugineum HOM05D007903 ORTHO05D009925 2.6e-22 109.4 170 40.6
Sc04g0006190 Simmondsia chinensis HOM05D007903 ORTHO05D009925 7.5e-22 107.8 161 42.2
Sed0015064 Sechium edule HOM05D007903 ORTHO05D009925 9.8e-22 107.5 160 43.8
AL2G27200 Arabidopsis lyrata HOM05D007903 ORTHO05D009925 2.2e-21 106.3 162 44.4
Cpa.g.sc65.47 Carica papaya HOM05D007903 ORTHO05D009925 4.9e-21 105.1 173 44.5
COL.COLO4_08991 Corchorus olitorius HOM05D007903 ORTHO05D009925 4.9e-21 105.1 148 48.6
AT1G68350 Arabidopsis thaliana HOM05D007903 ORTHO05D009925 1.4e-20 103.6 165 42.4
Migut.E00359 Erythranthe guttata HOM05D007903 ORTHO05D009925 1.4e-20 103.6 157 44.6
Glyma.20G117500 Glycine max HOM05D007903 ORTHO05D009925 1.4e-20 103.6 156 48.7
BcaB03g15412 Brassica carinata HOM05D007903 ORTHO05D009925 5.4e-20 101.7 166 40.4
Carub.0002s1485 Capsella rubella HOM05D007903 ORTHO05D009925 5.4e-20 101.7 163 42.3
Phvul.007G029300 Phaseolus vulgaris HOM05D007903 ORTHO05D009925 5.4e-20 101.7 163 45.4
Sp5g23400 Schrenkiella parvula HOM05D007903 ORTHO05D009925 5.4e-20 101.7 169 38.5
Sopen04g002420 Solanum pennellii HOM05D007903 ORTHO05D009925 5.4e-20 101.7 128 46.1
BraA02t06557Z Brassica rapa HOM05D007903 ORTHO05D009925 6.0e-19 98.2 168 38.1
CANSAT01G0431 Cannabis sativa HOM05D007903 ORTHO05D009925 1.0e-18 97.4 173 39.3
BcaB05g24366 Brassica carinata HOM05D007903 ORTHO05D009925 2.3e-18 96.3 166 39.8
BcaC08g45975 Brassica carinata HOM05D007903 ORTHO05D009925 5.0e-18 95.1 167 38.9
C06p37650 Brassica napus HOM05D007903 ORTHO05D009925 5.0e-18 95.1 167 38.9
BolC6t38868H Brassica oleracea HOM05D007903 ORTHO05D009925 5.0e-18 95.1 167 38.9
CARHR061060 Cardamine hirsuta HOM05D007903 ORTHO05D009925 5.0e-18 95.1 163 40.5
Lsat_1_v5_gn_3_57941 Lactuca sativa HOM05D007903 ORTHO05D009925 6.2e-16 88.2 111 48.6
Eucgr.G02306 Eucalyptus grandis HOM05D007903 ORTHO05D009925 6.8e-15 84.7 172 40.7
EL10Ac6g14355 Beta vulgaris HOM05D007903 ORTHO05D009925 1.5e-14 83.6 156 37.2
Dinv31619 Davidia involucrata HOM05D007903 ORTHO05D009925 1.5e-14 83.6 162 40.1
SalBow8G0258 Salvia bowleyana HOM05D065226 ORTHO05D009925 4.1e-12 75.5 156 39.7
SalBow8G1517 Salvia bowleyana HOM05D065226 ORTHO05D009925 4.1e-12 75.5 156 39.7
HPP92_004796 Vanilla planifolia HOM05D007903 ORTHO05D009925 5.1e-10 68.6 167 36.5
vmacro10574 Vaccinium macrocarpon HOM05D007903 ORTHO05D009925 3.6e-08 62.4 60 56.7
Os01g0133200 Oryza sativa ssp. japonica HOM05D007903 ORTHO05D009925 4.7e-08 62.0 180 33.9
Actinidia38376 Actinidia chinensis HOM05D007903 ORTHO05D009925 2.3e-07 59.7 65 52.3
SGA_v2.0_scaffold170G38783 Striga asiatica HOM05D001612 ORTHO05D002104 2.0e-06 56.6 99 38.4


User provided reference genes

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