Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015837 Carpinus fangiana HOM05D005909 ORTHO05D007481 6.9e-215 750.4 376 100.0
Haze_00654 Corylus avellana HOM05D005909 ORTHO05D007481 1.1e-188 663.3 518 70.5
QL01p010815 Quercus lobata HOM05D005909 ORTHO05D007481 1.4e-183 646.4 385 83.6
QL93p0145_0024 Quercus lobata HOM05D005909 ORTHO05D007481 1.4e-183 646.4 385 83.6
CiPaw.05G242600 Carya illinoinensis HOM05D005909 ORTHO05D007481 3.2e-180 635.2 386 83.2
Lj5g0016761 Lotus japonicus HOM05D005909 ORTHO05D007481 1.9e-172 609.4 386 78.8
Glyma.20G120600 Glycine max HOM05D005909 ORTHO05D007481 7.2e-172 607.4 386 77.7
Ciclev10015519m.g Citrus clementina HOM05D005909 ORTHO05D007481 1.2e-171 606.7 386 76.9
TPR.G4906 Trifolium pratense HOM05D005909 ORTHO05D007481 1.2e-171 606.7 386 79.3
Atru.chr11.237 Acer truncatum HOM05D005909 ORTHO05D007481 2.1e-171 605.9 386 78.8
Hma1.2p1_2306F.1_g319360 Hydrangea macrophylla HOM05D005909 ORTHO05D007481 2.7e-171 605.5 386 78.0
Medtr1g109590 Medicago truncatula HOM05D005909 ORTHO05D007481 4.7e-171 604.7 384 79.2
TWI79G1572 Tripterygium wilfordii HOM05D005909 ORTHO05D007481 1.0e-170 603.6 382 78.0
COL.COLO4_32148 Corchorus olitorius HOM05D005909 ORTHO05D007481 1.4e-170 603.2 385 77.1
Hma1.2p1_1314F.1_g274990 Hydrangea macrophylla HOM05D005909 ORTHO05D007481 1.4e-170 603.2 386 77.5
Actinidia14921 Actinidia chinensis HOM05D005909 ORTHO05D007481 1.1e-169 600.1 386 77.2
Ca_06889_v3 Cicer arietinum L. HOM05D005909 ORTHO05D007481 1.5e-169 599.7 386 79.0
TAR622G1259 Trochodendron aralioides HOM05D005909 ORTHO05D007481 1.5e-169 599.7 386 77.5
CSS0033004 Camellia sinensis var. sinensis HOM05D005909 ORTHO05D007481 2.0e-169 599.4 386 76.7
Duzib248G1493 Durio zibethinus HOM05D005909 ORTHO05D007481 2.0e-169 599.4 393 76.1
Gohir.D02G171900 Gossypium hirsutum HOM05D005909 ORTHO05D007481 2.0e-169 599.4 388 76.3
Psat6g224680 Pisum sativum HOM05D005909 ORTHO05D007481 2.0e-169 599.4 386 78.5
Prupe.1G316800 Prunus persica HOM05D005909 ORTHO05D007481 2.6e-169 599.0 378 78.6
RcHm_v2.0_Chr4g0434411 Rosa chinensis HOM05D005909 ORTHO05D007481 2.6e-169 599.0 379 78.1
Sabra10G0090400 Salix brachista HOM05D005909 ORTHO05D007481 7.4e-169 597.4 386 78.2
Nn4g23953 Nelumbo nucifera HOM05D005909 ORTHO05D007481 3.7e-168 595.1 386 76.9
Gohir.A03G148900 Gossypium hirsutum HOM05D005909 ORTHO05D007481 6.3e-168 594.3 395 75.4
Gorai.005G193400 Gossypium raimondii HOM05D005909 ORTHO05D007481 6.3e-168 594.3 394 75.4
Potri.010G120200 Populus trichocarpa HOM05D005909 ORTHO05D007481 1.4e-167 593.2 386 78.5
VMungo0720G1068 Vigna mungo HOM05D005909 ORTHO05D007481 7.7e-166 587.4 380 77.9
FvH4_4g26720 Fragaria vesca HOM05D005909 ORTHO05D007481 1.0e-165 587.0 391 75.2
GSVIVG01011843001 Vitis vinifera HOM05D005909 ORTHO05D007481 1.3e-165 586.6 380 77.9
arahy.Tifrunner.gnm1.ann1.IU6D7D Arachis hypogaea HOM05D005909 ORTHO05D007481 1.7e-165 586.3 389 75.3
MD16G1037200 Malus domestica HOM05D005909 ORTHO05D007481 1.7e-165 586.3 384 76.6
vmacro10599 Vaccinium macrocarpon HOM05D005909 ORTHO05D007481 2.9e-165 585.5 386 75.1
CAN.G610.24 Capsicum annuum HOM05D005909 ORTHO05D007481 1.9e-164 582.8 385 75.1
Cc11_g09670 Coffea canephora HOM05D005909 ORTHO05D007481 1.9e-164 582.8 386 75.6
Eucgr.G02238 Eucalyptus grandis HOM05D005909 ORTHO05D007481 2.5e-164 582.4 380 76.6
arahy.Tifrunner.gnm1.ann1.W577BF Arachis hypogaea HOM05D005909 ORTHO05D007481 1.6e-163 579.7 388 75.0
Rhsim09G0103900 Rhododendron simsii HOM05D005909 ORTHO05D007481 1.6e-163 579.7 402 72.1
Lalb_Chr21g0308731 Lupinus albus HOM05D005909 ORTHO05D007481 2.1e-163 579.3 381 76.9
Phvul.007G032000 Phaseolus vulgaris HOM05D005909 ORTHO05D007481 4.7e-163 578.2 386 75.9
Nitab4.5_0002112g0090 Nicotiana tabacum HOM05D005909 ORTHO05D007481 4.0e-162 575.1 385 73.8
Lsat_1_v5_gn_3_62021 Lactuca sativa HOM05D005909 ORTHO05D007481 5.2e-162 574.7 385 73.2
Solyc05g008870.3 Solanum lycopersicum HOM05D005909 ORTHO05D007481 2.6e-161 572.4 385 73.8
MELO3C005340.2 Cucumis melo HOM05D005909 ORTHO05D007481 3.4e-161 572.0 386 73.3
Sopen05g004630 Solanum pennellii HOM05D005909 ORTHO05D007481 4.4e-161 571.6 385 73.5
DCAR_007264 Daucus carota HOM05D005909 ORTHO05D007481 1.7e-160 569.7 384 73.7
PGR119G2457 Punica granatum HOM05D005909 ORTHO05D007481 2.8e-160 568.9 385 72.7
CsaV3_5G028790 Cucumis sativus L. HOM05D005909 ORTHO05D007481 6.3e-160 567.8 386 72.3
Nitab4.5_0000694g0120 Nicotiana tabacum HOM05D005909 ORTHO05D007481 1.8e-159 566.2 385 73.8
SalBow8G3248 Salvia bowleyana HOM05D005909 ORTHO05D007481 2.4e-159 565.8 383 73.6
Sed0017467 Sechium edule HOM05D005909 ORTHO05D007481 2.4e-159 565.8 386 72.5
HanXRQChr15g0477421 Helianthus annuus HOM05D005909 ORTHO05D007481 3.1e-159 565.5 386 72.3
MBI16_g44832_MAGBIO Magnolia biondii HOM05D005909 ORTHO05D007481 1.2e-158 563.5 385 73.2
Aqoxy3G04056 Aquilegia oxysepala HOM05D005909 ORTHO05D007481 1.7e-157 559.7 386 72.8
CARHR143760 Cardamine hirsuta HOM05D005909 ORTHO05D007481 1.7e-157 559.7 384 71.9
BcaC06g34207 Brassica carinata HOM05D005909 ORTHO05D007481 1.1e-156 557.0 379 71.0
SalBow8G0352 Salvia bowleyana HOM05D005909 ORTHO05D007481 1.9e-156 556.2 390 72.1
Sc14g0007280 Simmondsia chinensis HOM05D005909 ORTHO05D007481 7.2e-156 554.3 387 72.1
THA.LOC104823950 Tarenaya hassleriana HOM05D005909 ORTHO05D007481 2.1e-155 552.7 382 72.3
ECA246G0525 Erigeron canadensis HOM05D005909 ORTHO05D007481 1.0e-154 550.4 383 70.0
C07p31670 Brassica napus HOM05D005909 ORTHO05D007481 2.3e-154 549.3 380 70.5
BolC7t43706H Brassica oleracea HOM05D005909 ORTHO05D007481 2.3e-154 549.3 380 70.5
MSTRG.13555 Avicennia marina HOM05D005909 ORTHO05D007481 1.5e-153 546.6 383 72.3
PSO782G5715 Papaver somniferum HOM05D005909 ORTHO05D007481 1.5e-153 546.6 384 71.4
Sp2g12680 Schrenkiella parvula HOM05D005909 ORTHO05D007481 1.5e-153 546.6 382 69.1
Lj6A753G52 Lonicera japonica HOM05D005909 ORTHO05D007481 4.4e-153 545.0 385 71.7
AL5G10170 Arabidopsis lyrata HOM05D005909 ORTHO05D007481 7.5e-153 544.3 384 70.1
Aa31LG2G8670 Aethionema arabicum HOM05D005909 ORTHO05D007481 4.9e-152 541.6 384 69.0
A06p44550 Brassica napus HOM05D005909 ORTHO05D007481 4.9e-152 541.6 385 68.8
Hund20744 Selenicereus undatus HOM05D005909 ORTHO05D007481 4.9e-152 541.6 382 69.4
AT2G01220 Arabidopsis thaliana HOM05D005909 ORTHO05D007481 1.1e-151 540.4 384 70.1
Dinv16136 Davidia involucrata HOM05D005909 ORTHO05D007481 5.4e-151 538.1 383 73.1
BraA06t27329Z Brassica rapa HOM05D005909 ORTHO05D007481 9.1e-151 537.3 390 68.2
Cpa.g.sc65.66 Carica papaya HOM05D005909 ORTHO05D007481 3.5e-150 535.4 386 71.0
FAN07G1481 Fragaria x ananassa HOM05D005909 ORTHO05D007481 1.0e-149 533.9 353 74.8
Ah.03g138370 Amaranthus hybridus HOM05D005909 ORTHO05D007481 1.1e-148 530.4 355 72.4
AUR62037268 Chenopodium quinoa HOM05D005909 ORTHO05D007481 4.2e-148 528.5 376 68.4
Thhalv10000909m.g Eutrema salsugineum HOM05D005909 ORTHO05D007481 1.6e-147 526.6 384 68.8
AUR62002812 Chenopodium quinoa HOM05D005909 ORTHO05D007481 4.7e-147 525.0 376 68.1
Manes.06G064900 Manihot esculenta HOM05D005909 ORTHO05D007481 1.8e-146 523.1 310 82.9
Migut.E00369 Erythranthe guttata HOM05D005909 ORTHO05D007481 2.6e-145 519.2 424 64.4
EL10Ac6g14305 Beta vulgaris HOM05D005909 ORTHO05D007481 1.3e-144 516.9 385 65.2
unitig_699.g19483 Utricularia gibba HOM05D005909 ORTHO05D007481 1.8e-143 513.1 383 69.5
HPP92_024514 Vanilla planifolia HOM05D005909 ORTHO05D007481 4.1e-143 511.9 376 67.8
ATR0807G244 Amborella trichopoda HOM05D005909 ORTHO05D007481 5.4e-143 511.5 383 65.3
AL5G17030 Arabidopsis lyrata HOM05D005909 ORTHO05D007481 7.0e-143 511.1 385 65.2
CDE08G1136 Ceratophyllum demersum HOM05D005909 ORTHO05D007481 9.2e-143 510.8 380 66.1
CARHR148990 Cardamine hirsuta HOM05D005909 ORTHO05D007481 3.5e-142 508.8 384 63.8
ClCG01G005900 Citrullus lanatus HOM05D005909 ORTHO05D007481 2.1e-139 499.6 386 67.1
Zm00001eb360650 Zea mays HOM05D005909 ORTHO05D007481 1.8e-138 496.5 384 64.8
AT3G27610 Arabidopsis thaliana HOM05D005909 ORTHO05D007481 2.3e-138 496.1 385 63.6
Peaxi162Scf00179g00534 Petunia axillaris HOM05D005909 ORTHO05D007481 9.8e-137 490.7 385 65.7
PSO063G1187 Papaver somniferum HOM05D005909 ORTHO05D007481 1.7e-136 490.0 347 71.2
Carub.0005s0605 Capsella rubella HOM05D005909 ORTHO05D007481 8.3e-136 487.6 379 64.6
FAN12G0127 Fragaria x ananassa HOM05D005909 ORTHO05D007481 1.1e-135 487.3 292 79.5
Thecc.02G222000 Theobroma cacao HOM05D005909 ORTHO05D007481 4.6e-134 481.9 310 78.4
FAN22G0620 Fragaria x ananassa HOM05D005909 ORTHO05D007481 1.9e-132 476.5 292 77.7
FAN12G0185 Fragaria x ananassa HOM05D005909 ORTHO05D007481 5.2e-130 468.4 308 74.4
Dinv31596 Davidia involucrata HOM05D005909 ORTHO05D007481 4.4e-129 465.3 332 72.3
Actinidia16683 Actinidia chinensis HOM05D005909 ORTHO05D007481 3.5e-118 429.1 312 71.5
Oeu027686.1 Olea europaea HOM05D005909 ORTHO05D007481 1.7e-117 426.8 385 61.6
CANSAT01G0643 Cannabis sativa HOM05D005909 ORTHO05D007481 1.6e-115 420.2 264 75.8
Mapoly0100s0051 Marchantia polymorpha HOM05D005909 ORTHO05D007481 5.2e-114 415.2 383 54.3
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 5.1e-109 398.7 376 52.4
Carub.0005s0021 Capsella rubella HOM05D005909 ORTHO05D007481 5.1e-109 398.7 266 72.2
FAN17G2694 Fragaria x ananassa HOM05D005909 ORTHO05D007481 5.6e-108 395.2 231 80.1
TAR622G0977 Trochodendron aralioides HOM05D005909 ORTHO05D007481 1.5e-105 387.1 234 79.5
Pp3c3_16750 Physcomitrium patens HOM05D005909 ORTHO05D007481 1.0e-101 374.4 385 49.6
Pp3c12_7340 Physcomitrium patens HOM05D005909 ORTHO05D007481 5.6e-100 368.6 379 49.6
SMO196G0003 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 5.3e-98 362.1 404 46.5
SGA_v2.0_scaffold14G06904 Striga asiatica HOM05D005909 ORTHO05D007481 7.9e-86 321.6 235 71.9
Os01g0691500 Oryza sativa ssp. japonica HOM05D005909 ORTHO05D007481 2.3e-85 320.1 271 61.3
Carub.0005s0593 Capsella rubella HOM05D005909 ORTHO05D007481 1.0e-64 251.5 237 57.8
SGA_v2.0_scaffold14G06901 Striga asiatica HOM05D005909 ORTHO05D007481 1.1e-63 248.1 153 75.8
Cre06.g278116 Chlamydomonas reinhardtii HOM05D005909 ORTHO05D007481 8.0e-54 215.3 432 34.7
MCO06G004 Micromonas commoda HOM05D005909 ORTHO05D007481 2.3e-53 213.8 394 35.3
PRCOL_00006609 Prasinoderma coloniale HOM05D005909 ORTHO05D007481 9.7e-52 208.4 431 35.3
PGSC0003DMG401030529 Solanum tuberosum HOM05D005909 ORTHO05D007481 9.7e-52 208.4 153 72.5
SEGI_08541 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 1.6e-41 174.5 152 58.6
SEGI_29486 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 1.5e-39 167.9 110 68.2
Oeu027687.1 Olea europaea HOM05D005909 ORTHO05D007481 2.7e-38 163.7 115 75.7
CBR_g39317 Chara braunii HOM05D005909 ORTHO05D007481 5.6e-31 139.4 183 41.5
CiPaw.05G241800 Carya illinoinensis HOM05D005909 ORTHO05D007481 1.4e-26 124.8 66 89.4
arahy.Tifrunner.gnm1.ann1.XNS652 Arachis hypogaea HOM05D005909 ORTHO05D007481 1.3e-24 118.2 147 48.3
TPR.G28941 Trifolium pratense HOM05D000324 ORTHO05D004875 2.1e-22 110.9 74 77.0
SMO265G0018 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 4.4e-20 103.2 140 39.3
SMO163G0092 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 1.2e-17 95.1 148 36.5
BcaC06g31323 Brassica carinata HOM05D005909 ORTHO05D007481 2.5e-15 87.4 69 63.8
CBR_g39316 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-12 78.6 72 52.8
SMO146G0235 Selaginella moellendorffii HOM05D020292 ORTHO05D030583 1.2e-12 78.6 113 37.2
SEGI_32432 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 2.0e-12 77.8 69 50.7
Gohir.D12G121400 Gossypium hirsutum HOM05D005909 ORTHO05D046826 2.9e-11 73.9 36 94.4
Gorai.008G132300 Gossypium raimondii HOM05D005909 ORTHO05D046826 3.5e-09 67.0 36 86.1
SMO199G0001 Selaginella moellendorffii HOM05D006925 ORTHO05D008830 1.3e-08 65.1 93 39.8
SMO201G0205 Selaginella moellendorffii HOM05D006925 ORTHO05D008830 6.2e-06 56.2 57 43.9


User provided reference genes

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