Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015829 Carpinus fangiana HOM05D004062 ORTHO05D004417 4.1e-50 201.1 100 100.0
Cfa015828 Carpinus fangiana HOM05D004062 ORTHO05D004417 1.1e-39 166.4 87 95.4
Haze_00662 Corylus avellana HOM05D004062 ORTHO05D004417 3.3e-31 138.3 89 82.0
Potri.010G119200 Populus trichocarpa HOM05D004062 ORTHO05D004417 1.9e-18 95.9 87 57.5
CiPaw.05G243300 Carya illinoinensis HOM05D004062 ORTHO05D004417 5.4e-18 94.4 88 59.1
TAR622G1405 Trochodendron aralioides HOM05D004062 ORTHO05D004417 1.0e-16 90.1 89 56.2
TAR622G0216 Trochodendron aralioides HOM05D004062 ORTHO05D004417 2.3e-16 89.0 89 55.1
Sabra10G0089600 Salix brachista HOM05D004062 ORTHO05D004417 3.0e-16 88.6 87 57.5
Ciclev10017934m.g Citrus clementina HOM05D004062 ORTHO05D004417 5.1e-16 87.8 95 49.5
FAN07G0530 Fragaria x ananassa HOM05D004062 ORTHO05D004417 5.1e-16 87.8 95 52.6
FvH4_4g26620 Fragaria vesca HOM05D004062 ORTHO05D004417 8.7e-16 87.0 95 51.6
FAN12G1602 Fragaria x ananassa HOM05D004062 ORTHO05D004417 8.7e-16 87.0 95 51.6
FvH4_4g26590 Fragaria vesca HOM05D004062 ORTHO05D004417 1.1e-15 86.7 95 52.6
FAN12G3833 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.1e-15 86.7 95 52.6
FAN17G2061 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.5e-15 85.5 95 54.7
FAN12G1821 Fragaria x ananassa HOM05D004062 ORTHO05D004417 3.3e-15 85.1 95 50.5
Dinv16146 Davidia involucrata HOM05D004062 ORTHO05D004417 7.4e-15 84.0 84 52.4
Dinv31584 Davidia involucrata HOM05D004062 ORTHO05D004417 7.4e-15 84.0 84 52.4
MBI16_g14298_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 1.3e-14 83.2 84 52.4
RcHm_v2.0_Chr4g0434241 Rosa chinensis HOM05D004062 ORTHO05D004417 1.6e-14 82.8 94 50.0
Prupe.1G317600 Prunus persica HOM05D004062 ORTHO05D004417 2.8e-14 82.0 91 52.7
RcHm_v2.0_Chr4g0434311 Rosa chinensis HOM05D004062 ORTHO05D004417 2.8e-14 82.0 98 50.0
Cpa.g.sc314.3 Carica papaya HOM05D004062 ORTHO05D004417 3.7e-14 81.6 80 53.8
Ciclev10017837m.g Citrus clementina HOM05D004062 ORTHO05D004417 3.7e-14 81.6 92 52.2
MBI16_g14297_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 6.2e-14 80.9 83 51.8
Prupe.1G317700 Prunus persica HOM05D004062 ORTHO05D004417 6.2e-14 80.9 96 50.0
MBI18_g04358_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 8.1e-14 80.5 84 51.2
PGR102G0077 Punica granatum HOM05D004062 ORTHO05D004417 1.1e-13 80.1 106 47.2
FvH4_4g26630 Fragaria vesca HOM05D004062 ORTHO05D004417 2.4e-13 79.0 102 47.1
FAN07G0543 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.4e-13 79.0 102 47.1
FAN12G0456 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.4e-13 79.0 102 47.1
FAN12G4350 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.4e-13 79.0 102 47.1
Aqoxy3G03995 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 4.0e-13 78.2 95 45.3
Aqoxy3G03996 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 4.0e-13 78.2 88 50.0
FvH4_4g26582 Fragaria vesca HOM05D004062 ORTHO05D004417 4.0e-13 78.2 95 43.2
Ciclev10017483m.g Citrus clementina HOM05D004062 ORTHO05D004417 5.3e-13 77.8 94 50.0
Ciclev10018020m.g Citrus clementina HOM05D004062 ORTHO05D004417 5.3e-13 77.8 95 46.3
FAN22G1760 Fragaria x ananassa HOM05D004062 ORTHO05D004417 6.9e-13 77.4 102 46.1
FAN17G2092 Fragaria x ananassa HOM05D004062 ORTHO05D004417 9.0e-13 77.0 102 46.1
FAN22G1832 Fragaria x ananassa HOM05D004062 ORTHO05D004417 9.0e-13 77.0 95 49.5
Eucgr.B02857 Eucalyptus grandis HOM05D004062 ORTHO05D004417 1.2e-12 76.6 93 50.5
Actinidia14929 Actinidia chinensis HOM05D004062 ORTHO05D004417 1.5e-12 76.3 83 49.4
FAN22G1944 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.6e-12 75.5 95 42.1
Nn3g17968 Nelumbo nucifera HOM05D004062 ORTHO05D004417 2.6e-12 75.5 93 46.2
Hma1.2p1_0767F.1_g215470 Hydrangea macrophylla HOM05D004062 ORTHO05D004417 7.6e-12 73.9 92 47.8
Nn4g23971 Nelumbo nucifera HOM05D004062 ORTHO05D004417 7.6e-12 73.9 91 42.9
TWI31G0152 Tripterygium wilfordii HOM05D004062 ORTHO05D004417 1.0e-11 73.6 91 49.5
Atru.chr11.263 Acer truncatum HOM05D004062 ORTHO05D004417 1.7e-11 72.8 92 44.6
Atru.chr11.283 Acer truncatum HOM05D004062 ORTHO05D004417 1.7e-11 72.8 92 44.6
CANSAT01G2259 Cannabis sativa HOM05D004062 ORTHO05D004417 1.7e-11 72.8 95 46.3
Thecc.04G128000 Theobroma cacao HOM05D004062 ORTHO05D004417 1.7e-11 72.8 91 41.8
Thecc.02G220400 Theobroma cacao HOM05D004062 ORTHO05D004417 2.2e-11 72.4 90 48.9
Sabra17G0098800 Salix brachista HOM05D004062 ORTHO05D004417 2.9e-11 72.0 92 44.6
Aqoxy3G03997 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 4.9e-11 71.2 87 47.1
Cc11_g09580 Coffea canephora HOM05D004062 ORTHO05D004417 4.9e-11 71.2 84 48.8
CiPaw.05G243400 Carya illinoinensis HOM05D004062 ORTHO05D004417 8.4e-11 70.5 80 53.8
Haze_14190 Corylus avellana HOM05D004062 ORTHO05D004417 1.4e-10 69.7 87 43.7
Rhsim09G0103200 Rhododendron simsii HOM05D004062 ORTHO05D004417 1.4e-10 69.7 84 41.7
Eucgr.G02232 Eucalyptus grandis HOM05D004062 ORTHO05D004417 2.5e-10 68.9 82 46.3
QL02p050215 Quercus lobata HOM05D004062 ORTHO05D004417 2.5e-10 68.9 90 44.4
Rhsim10G0073300 Rhododendron simsii HOM05D004062 ORTHO05D004417 2.5e-10 68.9 83 42.2
TAR629G2241 Trochodendron aralioides HOM05D004062 ORTHO05D004417 2.5e-10 68.9 81 50.6
Ciclev10018255m.g Citrus clementina HOM05D004062 ORTHO05D004417 3.2e-10 68.6 94 46.8
CiPaw.04G044300 Carya illinoinensis HOM05D004062 ORTHO05D004417 7.1e-10 67.4 86 44.2
MBI16_g14296_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 7.1e-10 67.4 81 45.7
Dinv34790 Davidia involucrata HOM05D002710 ORTHO05D002905 1.2e-09 66.6 79 48.1
Eucgr.F02795 Eucalyptus grandis HOM05D004062 ORTHO05D004417 1.2e-09 66.6 96 36.5
Potri.017G119800 Populus trichocarpa HOM05D004062 ORTHO05D004417 1.2e-09 66.6 91 40.7
Manes.01G113100 Manihot esculenta HOM05D004062 ORTHO05D004417 1.6e-09 66.2 93 39.8
ClCG01G005940 Citrullus lanatus HOM05D004062 ORTHO05D004417 2.1e-09 65.9 87 42.5
Duzib138G0221 Durio zibethinus HOM05D004062 ORTHO05D004417 2.7e-09 65.5 93 41.9
Gohir.A11G166400 Gossypium hirsutum HOM05D004062 ORTHO05D004417 6.0e-09 64.3 90 41.1
Aqoxy3G03994 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 1.0e-08 63.5 83 43.4
MELO3C005337.2 Cucumis melo HOM05D004062 ORTHO05D004417 1.0e-08 63.5 87 39.1
Dinv33967 Davidia involucrata HOM05D004062 ORTHO05D004417 1.0e-08 63.5 80 46.2
Rhsim08G0083900 Rhododendron simsii HOM05D004062 ORTHO05D004417 1.0e-08 63.5 80 45.0
Manes.02G072000 Manihot esculenta HOM05D004062 ORTHO05D004417 1.3e-08 63.2 94 39.4
Actinidia15903 Actinidia chinensis HOM05D002710 ORTHO05D002905 2.3e-08 62.4 106 40.6
CSS0019285 Camellia sinensis var. sinensis HOM05D004062 ORTHO05D004417 2.3e-08 62.4 88 39.8
CSS0038275 Camellia sinensis var. sinensis HOM05D004062 ORTHO05D004417 2.3e-08 62.4 88 39.8
Rhsim09G0103100 Rhododendron simsii HOM05D004062 ORTHO05D004417 2.3e-08 62.4 84 40.5
Glyma.02G089400 Glycine max HOM05D004062 ORTHO05D004417 3.0e-08 62.0 91 39.6
Manes.14G107900 Manihot esculenta HOM05D004062 ORTHO05D004417 3.0e-08 62.0 90 44.4
Potri.004G095150 Populus trichocarpa HOM05D004062 ORTHO05D004417 3.0e-08 62.0 86 44.2
Potri.004G095200 Populus trichocarpa HOM05D004062 ORTHO05D004417 3.0e-08 62.0 86 44.2
CiPaw.03G065300 Carya illinoinensis HOM05D004062 ORTHO05D004417 5.1e-08 61.2 91 41.8
CsaV3_5G028760 Cucumis sativus L. HOM05D004062 ORTHO05D004417 5.1e-08 61.2 91 37.4
Lj1g0013725 Lotus japonicus HOM05D004062 ORTHO05D004417 5.1e-08 61.2 94 37.2
Sed0027184 Sechium edule HOM05D004062 ORTHO05D004417 5.1e-08 61.2 80 47.5
CANSAT78G1768 Cannabis sativa HOM05D004062 ORTHO05D004417 8.7e-08 60.5 93 37.6
Glyma.18G293600 Glycine max HOM05D004062 ORTHO05D004417 1.1e-07 60.1 93 36.6
Ciclev10013069m.g Citrus clementina HOM05D004062 ORTHO05D004417 1.5e-07 59.7 92 40.2
COL.COLO4_09380 Corchorus olitorius HOM05D004062 ORTHO05D004417 1.5e-07 59.7 94 37.2
MBI10_g08537_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 1.5e-07 59.7 92 39.1
Sabra04G0064400 Salix brachista HOM05D004062 ORTHO05D004417 1.9e-07 59.3 91 39.6
Hma1.2p1_0500F.1_g167200 Hydrangea macrophylla HOM05D004062 ORTHO05D004417 4.3e-07 58.2 77 48.1
Cc07_g08490 Coffea canephora HOM05D004062 ORTHO05D004417 7.4e-07 57.4 90 37.8
HPP92_009718 Vanilla planifolia HOM05D004062 ORTHO05D004417 7.4e-07 57.4 90 37.8
VMungo1383G0607 Vigna mungo HOM05D004062 ORTHO05D004417 9.6e-07 57.0 91 37.4
Ciclev10013668m.g Citrus clementina HOM05D004062 ORTHO05D004417 1.3e-06 56.6 100 37.0
Aqoxy3G00188 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 1.6e-06 56.2 84 39.3
Phvul.008G008700 Phaseolus vulgaris HOM05D004062 ORTHO05D004417 2.1e-06 55.8 88 35.2
CsaV3_4G001080 Cucumis sativus L. HOM05D003529 ORTHO05D004106 2.8e-06 55.5 86 39.5
SEGI_14476 Sequoiadendron giganteum HOM05D003529 ORTHO05D004106 2.8e-06 55.5 76 39.5
Gohir.D11G172400 Gossypium hirsutum HOM05D004062 ORTHO05D004417 4.8e-06 54.7 85 37.6
Gohir.D11G172800 Gossypium hirsutum HOM05D004062 ORTHO05D004417 4.8e-06 54.7 85 37.6
Oeu008332.1 Olea europaea HOM05D003529 ORTHO05D004106 4.8e-06 54.7 83 39.8
DCAR_023626 Daucus carota HOM05D004062 ORTHO05D004417 6.2e-06 54.3 79 39.2
SEGI_21943 Sequoiadendron giganteum HOM05D003529 ORTHO05D004106 8.2e-06 53.9 98 35.7


User provided reference genes

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