Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015816 Carpinus fangiana HOM05D007426 ORTHO05D009167 1.7e-34 151.8 75 100.0
Haze_00680 Corylus avellana HOM05D007426 ORTHO05D009167 1.6e-32 145.2 75 96.0
QL01p003061 Quercus lobata HOM05D007426 ORTHO05D009167 4.4e-30 137.1 75 90.7
CiPaw.05G245100 Carya illinoinensis HOM05D007426 ORTHO05D009167 1.8e-28 131.7 75 86.7
Dinv04907 Davidia involucrata HOM05D007426 ORTHO05D009167 5.0e-26 123.6 75 77.3
CSS0006507 Camellia sinensis var. sinensis HOM05D007426 ORTHO05D009167 2.5e-25 121.3 75 74.7
CSS0028756 Camellia sinensis var. sinensis HOM05D007426 ORTHO05D009167 2.5e-25 121.3 75 74.7
MELO3C012287.2 Cucumis melo HOM05D007426 ORTHO05D009167 5.5e-25 120.2 75 69.3
Manes.06G063200 Manihot esculenta HOM05D007426 ORTHO05D009167 5.5e-25 120.2 75 74.7
Aqoxy3G03989 Aquilegia oxysepala HOM05D007426 ORTHO05D009167 1.6e-24 118.6 75 70.7
MD16G1034800 Malus domestica HOM05D007426 ORTHO05D009167 4.7e-24 117.1 75 73.3
MSTRG.13563 Avicennia marina HOM05D007426 ORTHO05D009167 6.1e-24 116.7 75 70.7
Ciclev10017504m.g Citrus clementina HOM05D007426 ORTHO05D009167 6.1e-24 116.7 75 73.3
MD13G1032800 Malus domestica HOM05D007426 ORTHO05D009167 1.4e-23 115.5 75 72.0
Cc11_g09290 Coffea canephora HOM05D007426 ORTHO05D009167 2.3e-23 114.8 75 69.3
THA.LOC104821759 Tarenaya hassleriana HOM05D007426 ORTHO05D009167 2.3e-23 114.8 75 66.7
Hma1.2p1_0882F.1_g232200 Hydrangea macrophylla HOM05D007426 ORTHO05D009167 6.8e-23 113.2 75 69.3
GSVIVG01011807001 Vitis vinifera HOM05D000798 ORTHO05D000659 1.5e-22 112.1 75 70.7
CsaV3_5G034750 Cucumis sativus L. HOM05D007426 ORTHO05D009167 2.0e-22 111.7 75 68.0
Sc11g0003960 Simmondsia chinensis HOM05D007426 ORTHO05D009167 2.6e-22 111.3 75 68.0
TWI79G0655 Tripterygium wilfordii HOM05D007426 ORTHO05D009167 4.4e-22 110.5 72 73.6
ClCG04G001050 Citrullus lanatus HOM05D007426 ORTHO05D009167 5.7e-22 110.2 75 64.0
Duzib248G0356 Durio zibethinus HOM05D007426 ORTHO05D009167 7.5e-22 109.8 75 66.7
Sed0007337 Sechium edule HOM05D007426 ORTHO05D009167 1.3e-21 109.0 75 65.3
COL.COLO4_35570 Corchorus olitorius HOM05D002230 ORTHO05D002441 1.7e-21 108.6 75 61.3
TAR629G2850 Trochodendron aralioides HOM05D007426 ORTHO05D009167 2.2e-21 108.2 75 69.3
Nn3g17999 Nelumbo nucifera HOM05D007426 ORTHO05D009167 2.8e-21 107.8 75 69.3
Cpa.g.sc65.89 Carica papaya HOM05D007426 ORTHO05D009167 3.7e-21 107.5 75 65.3
Aa31LG7G6970 Aethionema arabicum HOM05D007426 ORTHO05D009167 4.8e-21 107.1 75 61.3
CANSAT01G1275 Cannabis sativa HOM05D007426 ORTHO05D009167 1.4e-20 105.5 76 68.4
RcHm_v2.0_Chr4g0434041 Rosa chinensis HOM05D007426 ORTHO05D009167 1.8e-20 105.1 76 68.4
Gohir.A03G149700 Gossypium hirsutum HOM05D007426 ORTHO05D009167 2.4e-20 104.8 75 68.0
Lj3A877T95 Lonicera japonica HOM05D007426 ORTHO05D009167 2.4e-20 104.8 75 65.3
Gohir.D02G172600 Gossypium hirsutum HOM05D007426 ORTHO05D009167 3.1e-20 104.4 75 66.7
Nitab4.5_0000350g0090 Nicotiana tabacum HOM05D007426 ORTHO05D009167 4.1e-20 104.0 75 65.3
Atru.chr11.331 Acer truncatum HOM05D007426 ORTHO05D009167 9.1e-20 102.8 75 61.3
Sopen05g004400 Solanum pennellii HOM05D007426 ORTHO05D009167 9.1e-20 102.8 75 62.7
Eucgr.G00774 Eucalyptus grandis HOM05D007426 ORTHO05D009167 1.2e-19 102.4 75 65.3
Gorai.005G194300 Gossypium raimondii HOM05D007426 ORTHO05D009167 1.2e-19 102.4 75 65.3
MBI02_g38361_MAGBIO Magnolia biondii HOM05D007426 ORTHO05D009167 1.2e-19 102.4 75 61.3
Solyc05g008560.1 Solanum lycopersicum HOM05D007426 ORTHO05D009167 1.6e-19 102.1 75 61.3
Nitab4.5_0003886g0020 Nicotiana tabacum HOM05D007426 ORTHO05D009167 2.0e-19 101.7 74 64.9
PGSC0003DMG402030517 Solanum tuberosum HOM05D007426 ORTHO05D009167 4.5e-19 100.5 75 61.3
Lalb_Chr10g0096341 Lupinus albus HOM05D007426 ORTHO05D009167 1.0e-18 99.4 78 65.4
SGA_v2.0_scaffold376G50296 Striga asiatica HOM05D007426 ORTHO05D009167 1.0e-18 99.4 75 64.0
SalBow8G0581 Salvia bowleyana HOM05D007426 ORTHO05D009167 1.3e-18 99.0 76 60.5
PGR119G0474 Punica granatum HOM05D007426 ORTHO05D009167 2.9e-18 97.8 75 61.3
Ca_12586_v3 Cicer arietinum L. HOM05D007426 ORTHO05D009167 6.6e-18 96.7 81 63.0
Psat6g044600 Pisum sativum HOM05D007426 ORTHO05D009167 6.6e-18 96.7 82 62.2
Thhalv10006897m.g Eutrema salsugineum HOM05D007426 ORTHO05D009167 8.6e-18 96.3 73 61.6
Rhsim09G0137400 Rhododendron simsii HOM05D007426 ORTHO05D009167 2.5e-17 94.7 75 58.7
DCAR_023623 Daucus carota HOM05D007426 ORTHO05D009167 3.3e-17 94.4 73 58.9
VMungo1215G1392 Vigna mungo HOM05D007426 ORTHO05D009167 4.2e-17 94.0 76 67.1
vmacro10360 Vaccinium macrocarpon HOM05D007426 ORTHO05D009167 5.5e-17 93.6 75 57.3
TPR.G36966 Trifolium pratense HOM05D007426 ORTHO05D009167 9.5e-17 92.8 81 61.7
Lj2g0001206 Lotus japonicus HOM05D007426 ORTHO05D009167 1.2e-16 92.4 77 63.6
Glyma.13G034900 Glycine max HOM05D007426 ORTHO05D009167 1.6e-16 92.0 76 60.5
Phvul.003G029100 Phaseolus vulgaris HOM05D007426 ORTHO05D009167 2.8e-16 91.3 76 63.2
CAN.G1489.16 Capsicum annuum HOM05D007426 ORTHO05D009167 3.6e-16 90.9 76 56.6
Glyma.14G156100 Glycine max HOM05D007426 ORTHO05D009167 4.7e-16 90.5 76 59.2
Sp1g20420 Schrenkiella parvula HOM05D007426 ORTHO05D009167 4.7e-16 90.5 73 58.9
Actinidia34749 Actinidia chinensis HOM05D007426 ORTHO05D009167 8.0e-16 89.7 69 66.7
arahy.Tifrunner.gnm1.ann1.5H8JFW Arachis hypogaea HOM05D003289 ORTHO05D009167 1.8e-15 88.6 79 59.5
arahy.Tifrunner.gnm1.ann1.A3A4LS Arachis hypogaea HOM05D007426 ORTHO05D009167 1.8e-15 88.6 79 59.5
AL1G36520 Arabidopsis lyrata HOM05D007426 ORTHO05D009167 2.3e-15 88.2 73 60.3
Medtr1g031720 Medicago truncatula HOM05D007426 ORTHO05D009167 3.0e-15 87.8 78 59.0
CDE04G0172 Ceratophyllum demersum HOM05D007426 ORTHO05D009167 5.2e-15 87.0 75 57.3
FAN12G0928 Fragaria x ananassa HOM05D007426 ORTHO05D009167 8.9e-15 86.3 76 57.9
FAN12G1804 Fragaria x ananassa HOM05D007426 ORTHO05D009167 8.9e-15 86.3 76 57.9
CARHR023340 Cardamine hirsuta HOM05D007426 ORTHO05D009167 1.2e-14 85.9 73 56.2
Lsat_1_v5_gn_4_15701 Lactuca sativa HOM05D007426 ORTHO05D009167 1.5e-14 85.5 75 52.0
FAN17G2923 Fragaria x ananassa HOM05D007426 ORTHO05D009167 2.0e-14 85.1 76 57.9
AT1G22960 Arabidopsis thaliana HOM05D007426 ORTHO05D009167 7.5e-14 83.2 73 57.5
FvH4_4g26410 Fragaria vesca HOM05D007426 ORTHO05D009167 9.8e-14 82.8 76 55.3
Carub.0001s2246 Capsella rubella HOM05D007426 ORTHO05D009167 6.3e-13 80.1 73 53.4
BcaB03g11918 Brassica carinata HOM05D007426 ORTHO05D009167 1.8e-12 78.6 75 52.0
BraA09t39664Z Brassica rapa HOM05D007426 ORTHO05D009167 3.2e-12 77.8 74 52.7
Migut.E00390 Erythranthe guttata HOM05D007426 ORTHO05D009167 4.1e-12 77.4 61 57.4
HPP92_023011 Vanilla planifolia HOM05D007426 ORTHO05D009167 5.4e-12 77.0 75 46.7
ATR0579G149 Amborella trichopoda HOM05D007426 ORTHO05D009167 1.6e-11 75.5 75 48.0
A09p41750 Brassica napus HOM05D007426 ORTHO05D009167 1.6e-11 75.5 74 51.4
BcaB07g32294 Brassica carinata HOM05D007426 ORTHO05D009167 2.0e-11 75.1 75 50.7
A01p19900 Brassica napus HOM05D007426 ORTHO05D009167 4.5e-11 73.9 74 50.0
ECA234G2171 Erigeron canadensis HOM05D007426 ORTHO05D009167 1.0e-10 72.8 70 50.0
BcaC05g26208 Brassica carinata HOM05D007426 ORTHO05D009167 6.6e-10 70.1 74 48.6
C05p22170 Brassica napus HOM05D007426 ORTHO05D009167 6.6e-10 70.1 74 48.6
BolC5t30917H Brassica oleracea HOM05D007426 ORTHO05D009167 6.6e-10 70.1 74 48.6
CDE07G1153 Ceratophyllum demersum HOM05D007426 ORTHO05D009167 8.6e-10 69.7 62 53.2
FAN07G1506 Fragaria x ananassa HOM05D007426 ORTHO05D009167 1.5e-09 68.9 57 59.6
Oeu048376.1 Olea europaea HOM05D007426 ORTHO05D009167 8.9e-07 59.7 75 44.0


User provided reference genes

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