Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015815 Carpinus fangiana HOM05D005638 ORTHO05D006913 2.4e-125 452.2 233 100.0
Haze_00683 Corylus avellana HOM05D005638 ORTHO05D006913 2.5e-114 415.6 215 99.5
CiPaw.05G245200 Carya illinoinensis HOM05D005638 ORTHO05D006913 8.0e-105 384.0 215 89.3
QL01p003053 Quercus lobata HOM05D005638 ORTHO05D006913 3.0e-104 382.1 215 89.3
CSS0002078 Camellia sinensis var. sinensis HOM05D005638 ORTHO05D006913 7.0e-101 370.9 224 82.6
Atru.chr11.340 Acer truncatum HOM05D005638 ORTHO05D006913 1.6e-100 369.8 216 85.6
CSS0005399 Camellia sinensis var. sinensis HOM05D005638 ORTHO05D006913 1.6e-100 369.8 224 82.6
Ciclev10015376m.g Citrus clementina HOM05D005638 ORTHO05D006913 1.7e-99 366.3 216 86.1
TWI75G0624 Tripterygium wilfordii HOM05D005638 ORTHO05D006913 1.7e-99 366.3 215 84.7
GSVIVG01011806001 Vitis vinifera HOM05D005638 ORTHO05D006913 3.0e-99 365.5 221 84.6
Hma1.2p1_0882F.1_g232180 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 1.9e-98 362.8 230 79.6
Eucgr.H00037 Eucalyptus grandis HOM05D005638 ORTHO05D006913 3.3e-98 362.1 215 83.7
PGR119G2299 Punica granatum HOM05D005638 ORTHO05D006913 3.3e-98 362.1 217 81.6
Hma1.2p1_0882F.1_g232170 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 5.6e-98 361.3 215 83.7
Potri.008G126300 Populus trichocarpa HOM05D005638 ORTHO05D006913 1.2e-97 360.1 215 83.7
Prupe.1G319900 Prunus persica HOM05D005638 ORTHO05D006913 1.2e-97 360.1 215 83.7
Cc11_g09280 Coffea canephora HOM05D005638 ORTHO05D006913 4.7e-97 358.2 223 79.8
CARHR143670 Cardamine hirsuta HOM05D005638 ORTHO05D006913 6.2e-97 357.8 231 77.1
Lsat_1_v5_gn_3_11020 Lactuca sativa HOM05D005638 ORTHO05D006913 6.2e-97 357.8 209 85.2
Gorai.013G001800 Gossypium raimondii HOM05D005638 ORTHO05D006913 2.3e-96 355.9 215 83.7
HanXRQChr17g0534901 Helianthus annuus HOM05D005638 ORTHO05D006913 2.3e-96 355.9 212 82.5
Duzib106G1906 Durio zibethinus HOM05D005638 ORTHO05D006913 4.0e-96 355.1 219 82.6
Oeu064207.2 Olea europaea HOM05D005638 ORTHO05D006913 5.2e-96 354.8 215 81.4
Sed0003483 Sechium edule HOM05D005638 ORTHO05D006913 5.2e-96 354.8 206 86.4
CANSAT01G0033 Cannabis sativa HOM05D005638 ORTHO05D006913 6.8e-96 354.4 207 84.5
CAN.G1489.15 Capsicum annuum HOM05D005638 ORTHO05D006913 6.8e-96 354.4 215 80.5
Solyc05g008540.3 Solanum lycopersicum HOM05D005638 ORTHO05D006913 6.8e-96 354.4 215 80.5
Sopen05g004380 Solanum pennellii HOM05D005638 ORTHO05D006913 6.8e-96 354.4 215 80.5
Thecc.05G134700 Theobroma cacao HOM05D005638 ORTHO05D006913 6.8e-96 354.4 213 83.1
COL.COLO4_22224 Corchorus olitorius HOM05D005638 ORTHO05D006913 8.9e-96 354.0 219 81.7
PGSC0003DMG401030517 Solanum tuberosum HOM05D005638 ORTHO05D006913 8.9e-96 354.0 215 80.5
Gohir.A13G000300 Gossypium hirsutum HOM05D005638 ORTHO05D006913 1.2e-95 353.6 213 83.6
ECA246G4189 Erigeron canadensis HOM05D005638 ORTHO05D006913 1.5e-95 353.2 212 82.1
Peaxi162Scf00205g01130 Petunia axillaris HOM05D005638 ORTHO05D006913 2.0e-95 352.8 215 80.0
Sabra08G0095100 Salix brachista HOM05D005638 ORTHO05D006913 3.4e-95 352.1 215 81.9
Thhalv10000894m.g Eutrema salsugineum HOM05D005638 ORTHO05D006913 1.3e-94 350.1 214 80.4
Nn4g24022 Nelumbo nucifera HOM05D005638 ORTHO05D006913 2.2e-94 349.4 215 80.9
arahy.Tifrunner.gnm1.ann1.CLD3MC Arachis hypogaea HOM05D005638 ORTHO05D006913 3.7e-94 348.6 218 80.3
arahy.Tifrunner.gnm1.ann1.NRC6UQ Arachis hypogaea HOM05D005638 ORTHO05D006913 4.9e-94 348.2 218 80.3
Sp2g12590 Schrenkiella parvula HOM05D005638 ORTHO05D006913 6.4e-94 347.8 214 79.9
CsaV3_5G010590 Cucumis sativus L. HOM05D005638 ORTHO05D006913 1.1e-93 347.1 209 84.2
Nitab4.5_0000350g0120 Nicotiana tabacum HOM05D005638 ORTHO05D006913 1.4e-93 346.7 225 76.9
BcaC06g34215 Brassica carinata HOM05D005638 ORTHO05D006913 2.4e-93 345.9 214 79.0
Migut.E00391 Erythranthe guttata HOM05D005638 ORTHO05D006913 2.4e-93 345.9 217 78.8
MD16G1034700 Malus domestica HOM05D005638 ORTHO05D006913 4.1e-93 345.1 229 78.2
A06p44660 Brassica napus HOM05D005638 ORTHO05D006913 5.4e-93 344.7 214 79.4
C07p31590 Brassica napus HOM05D005638 ORTHO05D006913 5.4e-93 344.7 214 78.5
FvH4_4g26400 Fragaria vesca HOM05D005638 ORTHO05D006913 7.0e-93 344.4 215 79.5
FAN12G3267 Fragaria x ananassa HOM05D005638 ORTHO05D006913 7.0e-93 344.4 215 79.5
MELO3C034164.2 Cucumis melo HOM05D005638 ORTHO05D006913 9.2e-93 344.0 211 83.4
AL5G10070 Arabidopsis lyrata HOM05D005638 ORTHO05D006913 1.6e-92 343.2 214 79.0
EL10Ac6g14273 Beta vulgaris HOM05D005638 ORTHO05D006913 1.6e-92 343.2 229 76.4
DCAR_001932 Daucus carota HOM05D005638 ORTHO05D006913 1.6e-92 343.2 214 79.4
FAN12G2479 Fragaria x ananassa HOM05D005638 ORTHO05D006913 1.6e-92 343.2 215 79.1
Sc14g0007070 Simmondsia chinensis HOM05D005638 ORTHO05D006913 1.0e-91 340.5 211 80.6
THA.LOC104805050 Tarenaya hassleriana HOM05D005638 ORTHO05D006913 1.0e-91 340.5 218 78.0
MSTRG.2199 Avicennia marina HOM05D005638 ORTHO05D006913 2.3e-91 339.3 215 76.7
Carub.0005s0010 Capsella rubella HOM05D005638 ORTHO05D006913 2.3e-91 339.3 214 78.5
Hund25015 Selenicereus undatus HOM05D005638 ORTHO05D006913 2.3e-91 339.3 211 80.6
Glyma.20G123000 Glycine max HOM05D005638 ORTHO05D006913 3.9e-91 338.6 218 78.4
ClCG07G004650 Citrullus lanatus HOM05D005638 ORTHO05D006913 5.0e-91 338.2 217 81.1
Glyma.10G268100 Glycine max HOM05D005638 ORTHO05D006913 6.6e-91 337.8 218 78.0
vmacro10617 Vaccinium macrocarpon HOM05D005638 ORTHO05D006913 2.5e-90 335.9 206 82.0
BcaC06g31332 Brassica carinata HOM05D005638 ORTHO05D006913 4.3e-90 335.1 214 76.6
Lalb_Chr02g0145641 Lupinus albus HOM05D005638 ORTHO05D006913 4.3e-90 335.1 220 75.5
AT2G01120 Arabidopsis thaliana HOM05D005638 ORTHO05D006913 1.6e-89 333.2 232 73.3
Phvul.007G034200 Phaseolus vulgaris HOM05D005638 ORTHO05D006913 2.1e-89 332.8 218 76.6
Medtr1g109100 Medicago truncatula HOM05D005638 ORTHO05D006913 2.8e-89 332.4 211 78.2
Psat6g222760 Pisum sativum HOM05D005638 ORTHO05D006913 2.8e-89 332.4 215 77.7
FAN07G1772 Fragaria x ananassa HOM05D005638 ORTHO05D006913 3.6e-89 332.0 233 73.8
Lj5g0007245 Lotus japonicus HOM05D005638 ORTHO05D006913 8.1e-89 330.9 218 77.1
Ca_23705_v3 Cicer arietinum L. HOM05D005638 ORTHO05D006913 5.2e-88 328.2 215 75.8
Ca_30212_v3 Cicer arietinum L. HOM05D005638 ORTHO05D006913 5.2e-88 328.2 215 75.8
PSO782G2730 Papaver somniferum HOM05D005638 ORTHO05D006913 6.8e-88 327.8 223 74.9
PSO017G2298 Papaver somniferum HOM05D005638 ORTHO05D006913 8.9e-88 327.4 223 74.9
PSO478G2841 Papaver somniferum HOM05D005638 ORTHO05D006913 3.4e-87 325.5 223 74.4
RcHm_v2.0_Chr4g0434031 Rosa chinensis HOM05D005638 ORTHO05D006913 5.8e-87 324.7 215 76.3
SGA_v2.0_scaffold170G38821 Striga asiatica HOM05D005638 ORTHO05D006913 7.5e-87 324.3 239 69.5
Aqoxy5G03877 Aquilegia oxysepala HOM05D005638 ORTHO05D006913 5.4e-85 318.2 210 74.8
Aa31LG2G8760 Aethionema arabicum HOM05D005638 ORTHO05D006913 3.5e-84 315.5 231 69.7
Manes.10G073400 Manihot esculenta HOM05D005638 ORTHO05D006913 1.0e-83 313.9 215 75.3
BcaB07g30423 Brassica carinata HOM05D005638 ORTHO05D006913 8.6e-83 310.8 214 74.8
HPP92_020141 Vanilla planifolia HOM05D005638 ORTHO05D006913 2.5e-82 309.3 210 71.0
ATR0691G289 Amborella trichopoda HOM05D005638 ORTHO05D006913 3.3e-82 308.9 218 72.5
Gohir.D13G001900 Gossypium hirsutum HOM05D005638 ORTHO05D006913 4.7e-81 305.1 182 84.1
FAN17G1216 Fragaria x ananassa HOM05D005638 ORTHO05D006913 1.5e-79 300.1 233 68.7
Lj2C166G5 Lonicera japonica HOM05D005638 ORTHO05D006913 7.6e-79 297.7 262 62.6
SEGI_39107 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 2.9e-78 295.8 219 68.0
Os01g0683400 Oryza sativa ssp. japonica HOM05D005638 ORTHO05D006913 3.2e-77 292.4 256 60.9
BraA06t27339Z Brassica rapa HOM05D005638 ORTHO05D006913 1.2e-76 290.4 224 67.4
Nitab4.5_0013146g0020 Nicotiana tabacum HOM05D005638 ORTHO05D006913 4.6e-76 288.5 293 54.9
AUR62042716 Chenopodium quinoa HOM05D005638 ORTHO05D006913 6.0e-76 288.1 269 59.1
FAN22G2072 Fragaria x ananassa HOM05D005638 ORTHO05D006913 1.9e-74 283.1 191 76.4
Zm00001eb156550 Zea mays HOM05D005638 ORTHO05D006913 4.3e-74 282.0 220 67.3
Cpa.g.sc65.90 Carica papaya HOM05D005638 ORTHO05D006913 1.1e-72 277.3 187 77.0
SalBow8G2600 Salvia bowleyana HOM05D005638 ORTHO05D006913 2.4e-72 276.2 219 66.2
TAR622G0052 Trochodendron aralioides HOM05D005638 ORTHO05D006913 1.3e-70 270.4 155 87.7
unitig_52.g17425 Utricularia gibba HOM05D005638 ORTHO05D006913 4.3e-66 255.4 215 61.9
MBI10_g06749_MAGBIO Magnolia biondii HOM05D005638 ORTHO05D006913 1.2e-63 247.3 167 76.6
Atru.chr11.333 Acer truncatum HOM05D005638 ORTHO05D006913 2.9e-62 242.7 132 90.9
Thecc.06G067600 Theobroma cacao HOM05D005638 ORTHO05D006913 2.3e-59 233.0 143 79.0
Mapoly0031s0066 Marchantia polymorpha HOM05D005638 ORTHO05D006913 6.7e-59 231.5 212 59.0
Pp3c16_11150 Physcomitrium patens HOM05D005638 ORTHO05D006913 9.6e-58 227.6 220 54.1
VMungo0720G2401 Vigna mungo HOM05D005638 ORTHO05D006913 1.6e-57 226.9 132 82.6
MD13G1032600 Malus domestica HOM05D005638 ORTHO05D006913 2.0e-55 219.9 154 72.7
Dinv16164 Davidia involucrata HOM05D005638 ORTHO05D006913 2.9e-54 216.1 143 77.6
CBR_g38777 Chara braunii HOM05D005638 ORTHO05D006913 1.9e-53 213.4 181 59.7
AUR62014211 Chenopodium quinoa HOM05D005638 ORTHO05D006913 7.1e-53 211.5 212 56.1
CDE11G0817 Ceratophyllum demersum HOM05D005638 ORTHO05D006913 8.7e-51 204.5 125 80.8
AagrBONN_evm.TU.Sc2ySwM_344.3309 Anthoceros agrestis HOM05D005638 ORTHO05D006913 3.4e-47 192.6 198 53.5
A02p31700 Brassica napus HOM05D005638 ORTHO05D006913 4.9e-46 188.7 121 78.5
PRCOL_00001621 Prasinoderma coloniale HOM05D005638 ORTHO05D006913 5.7e-42 175.3 180 50.0
Rhsim11G0032000 Rhododendron simsii HOM05D005638 ORTHO05D006913 8.7e-35 151.4 157 54.1
MCO02G007 Micromonas commoda HOM05D005638 ORTHO05D006913 1.5e-34 150.6 171 46.8
Rhsim11G0032100 Rhododendron simsii HOM05D005638 ORTHO05D006913 2.5e-34 149.8 82 90.2
Ah.03g138510 Amaranthus hybridus HOM05D005638 ORTHO05D006913 1.3e-33 147.5 98 76.5
TPR.G7417 Trifolium pratense HOM05D005638 ORTHO05D006913 5.5e-29 132.1 94 70.2
Dinv04905 Davidia involucrata HOM05D005638 ORTHO05D006913 1.2e-28 131.0 187 46.0
BraA02t08176Z Brassica rapa HOM05D005638 ORTHO05D006913 8.8e-27 124.8 87 74.7
TPR.G31713 Trifolium pratense HOM05D005638 ORTHO05D006913 3.8e-22 109.4 63 87.3
SEGI_29357 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 5.0e-22 109.0 98 55.1
TPR.G15740 Trifolium pratense HOM05D005638 ORTHO05D006913 1.4e-21 107.5 69 81.2
Cfa022174 Carpinus fangiana HOM05D005638 ORTHO05D006913 5.5e-21 105.5 202 32.2
Cre17.g726500 Chlamydomonas reinhardtii HOM05D005638 ORTHO05D006913 7.2e-21 105.1 216 32.9
SMO351G0247 Selaginella moellendorffii HOM05D005638 ORTHO05D006913 2.3e-19 100.1 128 46.1
FAN28G2655 Fragaria x ananassa HOM05D005638 ORTHO05D006913 5.7e-18 95.5 65 70.8
SHI16222 Sapria himalayana HOM05D000030 ORTHO05D007344 7.0e-16 88.6 54 83.3
MD13G1032700 Malus domestica HOM05D005638 ORTHO05D006913 1.6e-15 87.4 54 83.3
Rhsim09G0101700 Rhododendron simsii HOM05D005638 ORTHO05D006913 5.9e-15 85.5 79 55.7
BcaC03g16999 Brassica carinata HOM05D005638 ORTHO05D006913 8.5e-14 81.6 47 83.0
Rhsim09G0101800 Rhododendron simsii HOM05D005638 ORTHO05D006913 1.2e-10 71.2 90 53.3
BolC2t10998H Brassica oleracea HOM05D005638 ORTHO05D006913 4.4e-10 69.3 231 28.6
C02p49080 Brassica napus HOM05D005638 ORTHO05D006913 2.4e-08 63.5 112 38.4
PSO170G3371 Papaver somniferum HOM05D005638 ORTHO05D006913 2.7e-07 60.1 40 77.5
SEGI_20204 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 1.3e-06 57.8 39 71.8


User provided reference genes

Program Settings