Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015796 Carpinus fangiana HOM05D004215 ORTHO05D005293 2.1e-166 589.0 304 100.0
Haze_00697 Corylus avellana HOM05D004215 ORTHO05D005293 6.9e-149 530.8 314 89.2
CiPaw.06G014700 Carya illinoinensis HOM05D004215 ORTHO05D005293 2.3e-136 489.2 302 84.4
CiPaw.05G246100 Carya illinoinensis HOM05D004215 ORTHO05D005293 7.4e-135 484.2 300 83.0
Manes.14G110200 Manihot esculenta HOM05D004215 ORTHO05D005293 3.3e-127 458.8 305 79.7
Potri.010G116500 Populus trichocarpa HOM05D004215 ORTHO05D005293 3.3e-127 458.8 304 79.9
Gohir.D05G319000 Gossypium hirsutum HOM05D004215 ORTHO05D005293 1.7e-126 456.4 296 79.7
Gorai.009G341900 Gossypium raimondii HOM05D004215 ORTHO05D005293 1.7e-126 456.4 296 79.7
Dinv16170 Davidia involucrata HOM05D004215 ORTHO05D005293 2.2e-126 456.1 304 78.3
Thecc.02G217400 Theobroma cacao HOM05D004215 ORTHO05D005293 2.2e-126 456.1 292 82.5
QL01p002798 Quercus lobata HOM05D004215 ORTHO05D005293 8.2e-126 454.1 332 74.1
TWI79G1401 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 1.1e-125 453.8 305 77.0
Ciclev10016124m.g Citrus clementina HOM05D004215 ORTHO05D005293 4.5e-124 448.4 302 76.8
Prupe.1G320800 Prunus persica HOM05D004215 ORTHO05D005293 4.5e-124 448.4 285 81.4
RcHm_v2.0_Chr4g0433881 Rosa chinensis HOM05D004215 ORTHO05D005293 7.7e-124 447.6 286 80.1
COL.COLO4_15325 Corchorus olitorius HOM05D004215 ORTHO05D005293 1.1e-122 443.7 290 79.0
MD13G1031300 Malus domestica HOM05D004215 ORTHO05D005293 5.5e-122 441.4 289 79.2
CsaV3_5G034820 Cucumis sativus L. HOM05D004215 ORTHO05D005293 9.4e-122 440.7 305 73.8
Eucgr.B02879 Eucalyptus grandis HOM05D004215 ORTHO05D005293 9.4e-122 440.7 304 77.3
ClCG05G022300 Citrullus lanatus HOM05D004215 ORTHO05D005293 1.6e-121 439.9 305 74.8
Potri.008G126700 Populus trichocarpa HOM05D004215 ORTHO05D005293 1.6e-121 439.9 276 82.2
MD16G1033500 Malus domestica HOM05D004215 ORTHO05D005293 3.0e-120 435.6 285 80.0
Atru.chr11.354 Acer truncatum HOM05D004215 ORTHO05D005293 4.0e-120 435.3 294 77.2
Duzib251G0621 Durio zibethinus HOM05D004215 ORTHO05D005293 4.0e-120 435.3 289 78.5
MELO3C012293.2 Cucumis melo HOM05D004215 ORTHO05D005293 6.8e-120 434.5 308 73.4
CSS0048780 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 2.0e-119 433.0 277 80.1
AL1G27210 Arabidopsis lyrata HOM05D004215 ORTHO05D005293 3.4e-119 432.2 294 75.2
CANSAT01G2004 Cannabis sativa HOM05D004215 ORTHO05D005293 3.4e-119 432.2 303 73.9
FvH4_4g26280 Fragaria vesca HOM05D004215 ORTHO05D005293 5.7e-119 431.4 293 77.1
FAN12G1757 Fragaria x ananassa HOM05D004215 ORTHO05D005293 5.7e-119 431.4 293 77.1
Carub.0001s1491 Capsella rubella HOM05D004215 ORTHO05D005293 7.5e-119 431.0 294 74.8
Sed0020304 Sechium edule HOM05D004215 ORTHO05D005293 7.5e-119 431.0 304 72.7
Lj5g0023519 Lotus japonicus HOM05D004215 ORTHO05D005293 1.7e-118 429.9 272 82.0
FAN12G4108 Fragaria x ananassa HOM05D004215 ORTHO05D005293 2.2e-118 429.5 293 76.8
Psat6g222520 Pisum sativum HOM05D004215 ORTHO05D005293 2.8e-118 429.1 298 76.5
Glyma.10G267000 Glycine max HOM05D004215 ORTHO05D005293 3.7e-118 428.7 286 78.7
Phvul.007G035000 Phaseolus vulgaris HOM05D004215 ORTHO05D005293 1.1e-117 427.2 298 76.8
THA.LOC104805048 Tarenaya hassleriana HOM05D004215 ORTHO05D005293 1.1e-117 427.2 294 75.5
AT1G15140 Arabidopsis thaliana HOM05D004215 ORTHO05D005293 2.4e-117 426.0 293 72.7
VMungo0720G1296 Vigna mungo HOM05D004215 ORTHO05D005293 2.4e-117 426.0 296 76.0
FAN22G1507 Fragaria x ananassa HOM05D004215 ORTHO05D005293 3.1e-117 425.6 293 76.1
Lalb_Chr06g0165701 Lupinus albus HOM05D004215 ORTHO05D005293 3.1e-117 425.6 287 76.3
TWI31G0297 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 1.6e-116 423.3 305 73.1
Thhalv10008333m.g Eutrema salsugineum HOM05D004215 ORTHO05D005293 2.7e-116 422.5 293 72.7
BolC8t49328H Brassica oleracea HOM05D004215 ORTHO05D005293 5.9e-116 421.4 301 72.8
Cpa.g.sc65.98 Carica papaya HOM05D004215 ORTHO05D005293 1.0e-115 420.6 262 80.9
Sabra10G0086200 Salix brachista HOM05D004215 ORTHO05D005293 2.2e-115 419.5 289 76.5
Sabra10G0087900 Salix brachista HOM05D004215 ORTHO05D005293 2.2e-115 419.5 289 76.5
A08p31720 Brassica napus HOM05D004215 ORTHO05D005293 2.9e-115 419.1 298 73.2
BraA08t35094Z Brassica rapa HOM05D004215 ORTHO05D005293 2.9e-115 419.1 298 73.2
PGSC0003DMG400030559 Solanum tuberosum HOM05D004215 ORTHO05D005293 2.9e-115 419.1 290 74.5
CARHR015680 Cardamine hirsuta HOM05D004215 ORTHO05D005293 5.0e-115 418.3 292 72.6
FAN17G1658 Fragaria x ananassa HOM05D004215 ORTHO05D005293 5.0e-115 418.3 280 78.2
BcaB03g13074 Brassica carinata HOM05D004215 ORTHO05D005293 6.5e-115 417.9 297 73.1
BolC5t30064H Brassica oleracea HOM05D004215 ORTHO05D005293 8.5e-115 417.5 294 72.1
CSS0000916 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 1.5e-114 416.8 304 71.4
Sopen05g004280 Solanum pennellii HOM05D004215 ORTHO05D005293 1.5e-114 416.8 303 71.9
BcaC07g38770 Brassica carinata HOM05D004215 ORTHO05D005293 5.5e-114 414.8 304 70.4
C08p17030 Brassica napus HOM05D004215 ORTHO05D005293 5.5e-114 414.8 304 70.4
Solyc05g008450.3 Solanum lycopersicum HOM05D004215 ORTHO05D005293 7.2e-114 414.5 303 71.6
FAN07G0674 Fragaria x ananassa HOM05D004215 ORTHO05D005293 9.4e-114 414.1 315 71.1
Glyma.20G123700 Glycine max HOM05D004215 ORTHO05D005293 8.0e-113 411.0 275 77.8
TAR629G2922 Trochodendron aralioides HOM05D004215 ORTHO05D005293 3.0e-112 409.1 322 69.6
Peaxi162Scf00205g00925 Petunia axillaris HOM05D004215 ORTHO05D005293 5.2e-112 408.3 297 71.0
Nitab4.5_0000293g0040 Nicotiana tabacum HOM05D004215 ORTHO05D005293 1.2e-111 407.1 298 71.1
BraA06t24295Z Brassica rapa HOM05D004215 ORTHO05D005293 1.5e-111 406.8 295 71.2
arahy.Tifrunner.gnm1.ann1.BMT3C6 Arachis hypogaea HOM05D004215 ORTHO05D005293 3.4e-111 405.6 304 69.1
Aa31LG1G20 Aethionema arabicum HOM05D004215 ORTHO05D005293 7.5e-111 404.4 297 69.7
arahy.Tifrunner.gnm1.ann1.IPKA5V Arachis hypogaea HOM05D004215 ORTHO05D005293 7.5e-111 404.4 304 68.8
BcaC05g25445 Brassica carinata HOM05D004215 ORTHO05D005293 9.8e-111 404.1 276 73.6
C05p13270 Brassica napus HOM05D004215 ORTHO05D005293 9.8e-111 404.1 276 73.6
Actinidia36693 Actinidia chinensis HOM05D004215 ORTHO05D005293 2.8e-110 402.5 257 77.8
Actinidia31987 Actinidia chinensis HOM05D004215 ORTHO05D005293 3.7e-110 402.1 258 77.5
Hund25007 Selenicereus undatus HOM05D004215 ORTHO05D005293 3.7e-110 402.1 279 74.6
Lalb_Chr17g0338761 Lupinus albus HOM05D004215 ORTHO05D005293 4.8e-110 401.7 276 75.0
Sed0017516 Sechium edule HOM05D004215 ORTHO05D005293 7.0e-109 397.9 308 68.5
Lsat_1_v5_gn_8_41661 Lactuca sativa HOM05D004215 ORTHO05D005293 2.7e-108 396.0 305 68.9
Rhsim09G0069000 Rhododendron simsii HOM05D004215 ORTHO05D005293 7.7e-108 394.4 248 79.0
CAN.G1489.9 Capsicum annuum HOM05D004215 ORTHO05D005293 1.7e-107 393.3 304 66.8
DCAR_023619 Daucus carota HOM05D004215 ORTHO05D005293 1.7e-107 393.3 274 72.3
MSTRG.13568 Avicennia marina HOM05D004215 ORTHO05D005293 2.3e-107 392.9 298 70.5
A06p11150 Brassica napus HOM05D004215 ORTHO05D005293 2.3e-107 392.9 276 72.5
Actinidia14939 Actinidia chinensis HOM05D004215 ORTHO05D005293 5.0e-107 391.7 257 75.5
Lj3A876G45 Lonicera japonica HOM05D004215 ORTHO05D005293 3.3e-106 389.0 274 73.7
HanXRQChr15g0466211 Helianthus annuus HOM05D004215 ORTHO05D005293 4.2e-106 388.7 307 68.4
Sc14g0007220 Simmondsia chinensis HOM05D004215 ORTHO05D005293 5.5e-106 388.3 317 65.9
Medtr1g108710 Medicago truncatula HOM05D004215 ORTHO05D005293 1.2e-105 387.1 274 75.5
Migut.E00397 Erythranthe guttata HOM05D004215 ORTHO05D005293 6.1e-105 384.8 307 67.1
Migut.L00828 Erythranthe guttata HOM05D004215 ORTHO05D005293 1.0e-104 384.0 269 72.1
Nitab4.5_0000350g0220 Nicotiana tabacum HOM05D004215 ORTHO05D005293 1.4e-104 383.6 297 69.0
ECA233G2791 Erigeron canadensis HOM05D004215 ORTHO05D005293 8.9e-104 380.9 260 74.6
SalBow8G1964 Salvia bowleyana HOM05D004215 ORTHO05D005293 1.2e-103 380.6 298 69.5
PGR102G1684 Punica granatum HOM05D004215 ORTHO05D005293 1.5e-103 380.2 268 72.4
Migut.L00651 Erythranthe guttata HOM05D004215 ORTHO05D005293 2.6e-103 379.4 271 71.6
BcaB02g06582 Brassica carinata HOM05D004215 ORTHO05D005293 9.8e-103 377.5 235 78.3
SGA_v2.0_scaffold14G06920 Striga asiatica HOM05D004215 ORTHO05D005293 1.3e-102 377.1 315 66.3
Sp1g13480 Schrenkiella parvula HOM05D004215 ORTHO05D005293 1.7e-102 376.7 294 67.7
MBI16_g21171_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 2.2e-102 376.3 312 67.9
AUR62014123 Chenopodium quinoa HOM05D004215 ORTHO05D005293 1.1e-101 374.0 265 72.1
EL10Ac6g14267 Beta vulgaris HOM05D004215 ORTHO05D005293 4.1e-101 372.1 311 66.6
Oeu004319.1 Olea europaea HOM05D004215 ORTHO05D005293 7.0e-101 371.3 258 74.0
MSTRG.2195 Avicennia marina HOM05D004215 ORTHO05D005293 1.7e-99 366.7 278 69.8
PSO017G7108 Papaver somniferum HOM05D004215 ORTHO05D005293 5.0e-99 365.2 274 64.2
PSO478G0614 Papaver somniferum HOM05D004215 ORTHO05D005293 2.5e-98 362.8 274 64.2
HPP92_021849 Vanilla planifolia HOM05D004215 ORTHO05D005293 4.3e-98 362.1 308 65.6
unitig_699.g19481 Utricularia gibba HOM05D004215 ORTHO05D005293 2.8e-97 359.4 277 67.9
Aqoxy3G00166 Aquilegia oxysepala HOM05D004215 ORTHO05D005293 8.9e-96 354.4 302 62.6
AUR62002761 Chenopodium quinoa HOM05D004215 ORTHO05D005293 9.8e-95 350.9 235 74.9
PGR119G1032 Punica granatum HOM05D004215 ORTHO05D005293 9.8e-95 350.9 273 67.8
Nn4g24046 Nelumbo nucifera HOM05D004215 ORTHO05D005293 2.2e-94 349.7 258 70.5
CDE06G1149 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 2.9e-94 349.4 311 63.0
SGA_v2.0_scaffold50G18535 Striga asiatica HOM05D004215 ORTHO05D005293 9.2e-93 344.4 307 62.2
Hma1.2p1_0114F.1_g055430 Hydrangea macrophylla HOM05D004215 ORTHO05D005293 4.7e-89 332.0 255 69.4
SEGI_29541 Sequoiadendron giganteum HOM05D004215 ORTHO05D005293 3.7e-86 322.4 255 63.5
DCAR_030188 Daucus carota HOM05D004215 ORTHO05D005293 1.1e-85 320.9 249 67.1
Os02g0328300 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 7.8e-84 314.7 305 57.4
SHI16315 Sapria himalayana HOM05D004215 ORTHO05D005293 1.5e-82 310.5 246 64.6
Gohir.A05G317200 Gossypium hirsutum HOM05D004215 ORTHO05D005293 2.8e-81 306.2 224 73.2
ATR0691G234 Amborella trichopoda HOM05D004215 ORTHO05D005293 8.1e-81 304.7 281 59.8
AagrBONN_evm.TU.Sc2ySwM_228.3165 Anthoceros agrestis HOM05D004215 ORTHO05D005293 5.2e-80 302.0 258 60.9
Mapoly0004s0030 Marchantia polymorpha HOM05D004215 ORTHO05D005293 4.1e-77 292.4 269 56.1
SMO174G0012 Selaginella moellendorffii HOM05D004215 ORTHO05D005293 1.1e-74 284.3 274 55.1
Ca_23697_v3 Cicer arietinum L. HOM05D004215 ORTHO05D005293 1.9e-74 283.5 177 82.5
CDE04G0818 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 2.1e-73 280.0 301 53.8
Actinidia33607 Actinidia chinensis HOM05D004215 ORTHO05D005293 8.1e-73 278.1 305 50.8
Pp3c16_22650 Physcomitrium patens HOM05D004215 ORTHO05D005293 1.4e-72 277.3 320 50.6
Zm00001eb121490 Zea mays HOM05D004215 ORTHO05D005293 3.8e-70 269.2 290 52.1
Actinidia15237 Actinidia chinensis HOM05D004215 ORTHO05D005293 2.7e-68 263.1 197 69.5
GSVIVG01011796001 Vitis vinifera HOM05D004215 ORTHO05D005293 2.4e-64 250.0 142 86.6
Os01g0120600 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 3.4e-63 246.1 215 58.1
Cc11_g09170 Coffea canephora HOM05D004215 ORTHO05D005293 1.2e-60 237.7 142 81.0
Lj6A750T89 Lonicera japonica HOM05D004215 ORTHO05D005293 1.2e-60 237.7 142 80.3
Zm00001eb241500 Zea mays HOM05D004215 ORTHO05D005293 2.5e-58 229.9 243 53.5
Actinidia33626 Actinidia chinensis HOM05D004215 ORTHO05D005293 2.7e-52 209.9 182 62.1
TPR.G4918 Trifolium pratense HOM05D004215 ORTHO05D005293 1.8e-51 207.2 114 90.4
vmacro01429 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 4.8e-49 199.1 127 77.2
vmacro01428 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 5.3e-48 195.7 163 63.8
BolC5t33841H Brassica oleracea HOM05D004215 ORTHO05D005293 3.4e-47 193.0 162 66.0
Actinidia33606 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.1e-45 188.0 281 40.9
Actinidia16703 Actinidia chinensis HOM05D004215 ORTHO05D005293 3.9e-43 179.5 225 48.4
Cre01.g000350 Chlamydomonas reinhardtii HOM05D004215 ORTHO05D005293 5.7e-42 175.6 238 46.2
CBR_g23714 Chara braunii HOM05D004215 ORTHO05D005293 1.1e-34 151.4 255 38.8
MCO13G089 Micromonas commoda HOM05D004215 ORTHO05D005293 9.7e-34 148.3 239 40.2
BolC2t11573H Brassica oleracea HOM05D004215 ORTHO05D005293 2.0e-31 140.6 156 54.5
arahy.Tifrunner.gnm1.ann1.B59VJ6 Arachis hypogaea HOM05D004215 ORTHO05D005293 2.1e-28 130.6 145 51.7
MBI10_g46302_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 2.7e-28 130.2 84 73.8
RcHm_v2.0_Chr6g0253871 Rosa chinensis HOM05D004215 ORTHO05D005293 4.3e-26 122.9 82 72.0
C02p55250 Brassica napus HOM05D004215 ORTHO05D005293 8.2e-25 118.6 193 43.5
RcHm_v2.0_Chr2g0123901 Rosa chinensis HOM05D004215 ORTHO05D005293 8.2e-25 118.6 86 68.6
BcaB07g30283 Brassica carinata HOM05D004215 ORTHO05D005293 6.9e-24 115.5 72 79.2
SMO201G0141 Selaginella moellendorffii HOM05D028400 ORTHO05D005293 2.6e-23 113.6 184 38.0
BcaC03g17546 Brassica carinata HOM05D004215 ORTHO05D005293 5.0e-22 109.4 132 50.8
Actinidia24608 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.1e-21 108.2 77 68.8
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 7.4e-18 95.5 62 74.2
TPR.G10991 Trifolium pratense HOM05D004215 ORTHO05D005293 1.4e-16 91.3 50 88.0
SMO356G0347 Selaginella moellendorffii HOM05D004215 ORTHO05D018306 4.5e-15 86.3 154 31.8
CBR_g8311 Chara braunii HOM05D004215 ORTHO05D018306 6.5e-14 82.4 168 31.5
AagrBONN_evm.TU.Sc2ySwM_228.585 Anthoceros agrestis HOM05D004215 ORTHO05D018306 1.1e-13 81.6 167 29.3
Mapoly0118s0023 Marchantia polymorpha HOM05D004215 ORTHO05D018306 1.5e-13 81.3 160 31.9
Pp3c20_8810 Physcomitrium patens HOM05D004215 ORTHO05D018306 5.5e-13 79.3 142 30.3
PRCOL_00001993 Prasinoderma coloniale HOM05D004215 ORTHO05D005293 4.8e-09 66.2 156 28.8
SEGI_37569 Sequoiadendron giganteum HOM05D004215 ORTHO05D018306 1.8e-08 64.3 130 29.2
C08p45130 Brassica napus HOM05D004215 ORTHO05D005293 6.5e-06 55.8 67 56.7
BolC8t52061H Brassica oleracea HOM05D004215 ORTHO05D005293 6.5e-06 55.8 67 56.7
Thhalv10007988m.g Eutrema salsugineum HOM05D000565 ORTHO05D004389 6.5e-06 55.8 167 25.1
Zm00001eb379240 Zea mays HOM05D000565 ORTHO05D004389 6.5e-06 55.8 165 24.8


User provided reference genes

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