Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015795 Carpinus fangiana HOM05D007140 ORTHO05D008539 1.9e-28 131.0 356 100.0
Haze_00698 Corylus avellana HOM05D007140 ORTHO05D008539 3.1e-15 87.0 51 84.3
CiPaw.05G246200 Carya illinoinensis HOM05D007140 ORTHO05D008539 1.9e-09 67.8 36 100.0
QL01p002793 Quercus lobata HOM05D007140 ORTHO05D008539 5.7e-09 66.2 36 97.2
Cpa.g.sc65.99 Carica papaya HOM05D007140 ORTHO05D008539 1.3e-08 65.1 36 94.4
CiPaw.06G014500 Carya illinoinensis HOM05D007140 ORTHO05D008539 1.3e-08 65.1 36 94.4
MELO3C012294.2 Cucumis melo HOM05D007140 ORTHO05D008539 1.3e-08 65.1 36 94.4
CsaV3_5G034830 Cucumis sativus L. HOM05D007140 ORTHO05D008539 1.3e-08 65.1 36 94.4
Eucgr.B02880 Eucalyptus grandis HOM05D007140 ORTHO05D008539 1.3e-08 65.1 36 94.4
Gohir.A05G317300 Gossypium hirsutum HOM05D007140 ORTHO05D008539 1.3e-08 65.1 36 94.4
Gohir.D05G319100 Gossypium hirsutum HOM05D007140 ORTHO05D008539 1.3e-08 65.1 36 94.4
Gorai.009G342100 Gossypium raimondii HOM05D007140 ORTHO05D008539 1.3e-08 65.1 36 94.4
Manes.14G110300 Manihot esculenta HOM05D007140 ORTHO05D008539 1.3e-08 65.1 36 94.4
TWI79G1374 Tripterygium wilfordii HOM05D007140 ORTHO05D008539 1.3e-08 65.1 36 94.4
Sc04g0005790 Simmondsia chinensis HOM05D007140 ORTHO05D008539 1.6e-08 64.7 36 94.4
COL.COLO4_06026 Corchorus olitorius HOM05D007140 ORTHO05D008539 2.1e-08 64.3 36 91.7
MBI16_g21172_MAGBIO Magnolia biondii HOM05D007140 ORTHO05D008539 2.1e-08 64.3 36 91.7
Nn4g24045 Nelumbo nucifera HOM05D007140 ORTHO05D008539 2.1e-08 64.3 36 91.7
Sed0020048 Sechium edule HOM05D007140 ORTHO05D008539 2.1e-08 64.3 36 91.7
Ciclev10015782m.g Citrus clementina HOM05D007140 ORTHO05D008539 2.8e-08 63.9 36 91.7
Hma1.2p1_0114F.1_g055420 Hydrangea macrophylla HOM05D007140 ORTHO05D008539 2.8e-08 63.9 36 88.9
MD13G1031200 Malus domestica HOM05D007140 ORTHO05D008539 2.8e-08 63.9 36 91.7
Prupe.1G320900 Prunus persica HOM05D007140 ORTHO05D008539 2.8e-08 63.9 36 91.7
PGR119G2007 Punica granatum HOM05D007140 ORTHO05D008539 2.8e-08 63.9 36 91.7
CDE06G2249 Ceratophyllum demersum HOM05D007140 ORTHO05D008539 3.7e-08 63.5 36 91.7
CDE07G0564 Ceratophyllum demersum HOM05D007140 ORTHO05D008539 3.7e-08 63.5 36 91.7
Duzib251G0133 Durio zibethinus HOM05D007140 ORTHO05D008539 3.7e-08 63.5 35 94.3
Rhsim09G0068700 Rhododendron simsii HOM05D067272 ORTHO05D008539 3.7e-08 63.5 36 91.7
Dinv04892 Davidia involucrata HOM05D007140 ORTHO05D008539 4.8e-08 63.2 36 88.9
PSO478G3468 Papaver somniferum HOM05D007140 ORTHO05D008539 4.8e-08 63.2 36 88.9
SHI16291 Sapria himalayana HOM05D007140 ORTHO05D008539 4.8e-08 63.2 36 88.9
THA.LOC104824159 Tarenaya hassleriana HOM05D007140 ORTHO05D008539 4.8e-08 63.2 36 91.7
Cc11_g09160 Coffea canephora HOM05D007140 ORTHO05D008539 6.3e-08 62.8 36 88.9
FvH4_4g26261 Fragaria vesca HOM05D007140 ORTHO05D008539 6.3e-08 62.8 36 88.9
FAN17G0786 Fragaria x ananassa HOM05D007140 ORTHO05D008539 6.3e-08 62.8 36 88.9
FAN22G0565 Fragaria x ananassa HOM05D007140 ORTHO05D008539 6.3e-08 62.8 36 88.9
HPP92_004883 Vanilla planifolia HOM05D007140 ORTHO05D008539 6.3e-08 62.8 36 88.9
Lj3P876T20 Lonicera japonica HOM05D007140 ORTHO05D008539 8.2e-08 62.4 36 88.9
Sabra08G0095700 Salix brachista HOM05D007140 ORTHO05D008539 8.2e-08 62.4 36 88.9
EL10Ac6g14263 Beta vulgaris HOM05D007140 ORTHO05D008539 1.1e-07 62.0 36 86.1
Atru.chr11.355 Acer truncatum HOM05D007140 ORTHO05D008539 1.4e-07 61.6 36 86.1
Actinidia31986 Actinidia chinensis HOM05D007140 ORTHO05D008539 1.4e-07 61.6 36 86.1
Migut.L00827 Erythranthe guttata HOM05D045982 ORTHO05D008539 1.4e-07 61.6 36 88.9
FAN12G1559 Fragaria x ananassa HOM05D003680 ORTHO05D004264 1.4e-07 61.6 36 86.1
Os01g0120700 Oryza sativa ssp. japonica HOM05D007140 ORTHO05D008539 1.4e-07 61.6 36 86.1
PSO017G0369 Papaver somniferum HOM05D007140 ORTHO05D008539 1.4e-07 61.6 36 86.1
RcHm_v2.0_Chr4g0433871 Rosa chinensis HOM05D007140 ORTHO05D008539 1.4e-07 61.6 36 86.1
TAR629G2134 Trochodendron aralioides HOM05D007140 ORTHO05D008539 1.4e-07 61.6 36 86.1
unitig_26.g10011 Utricularia gibba HOM05D007140 ORTHO05D008539 1.4e-07 61.6 36 88.9
FAN07G2347 Fragaria x ananassa HOM05D007140 ORTHO05D008539 1.8e-07 61.2 36 86.1
Glyma.10G266900 Glycine max HOM05D007140 ORTHO05D008539 1.8e-07 61.2 36 86.1
Glyma.20G123800 Glycine max HOM05D007140 ORTHO05D008539 1.8e-07 61.2 36 86.1
Lj5g0023497 Lotus japonicus HOM05D007140 ORTHO05D008539 1.8e-07 61.2 36 86.1
Peaxi162Scf00205g00914 Petunia axillaris HOM05D007140 ORTHO05D008539 1.8e-07 61.2 36 91.7
Potri.008G126800 Populus trichocarpa HOM05D007140 ORTHO05D008539 1.8e-07 61.2 36 86.1
Ah.02g128120 Amaranthus hybridus HOM05D007140 ORTHO05D008539 2.4e-07 60.8 36 86.1
CANSAT01G0870 Cannabis sativa HOM05D007140 ORTHO05D008539 2.4e-07 60.8 36 88.9
Psat6g222160 Pisum sativum HOM05D007140 ORTHO05D008539 2.4e-07 60.8 36 86.1
SEGI_30462 Sequoiadendron giganteum HOM05D007140 ORTHO05D008539 2.4e-07 60.8 36 83.3
TAR371G0416 Trochodendron aralioides HOM05D007140 ORTHO05D008539 2.4e-07 60.8 35 88.6
Zm00001eb126340 Zea mays HOM05D007140 ORTHO05D008539 2.4e-07 60.8 36 86.1
CAN.G1489.6 Capsicum annuum HOM05D007140 ORTHO05D008539 3.1e-07 60.5 36 88.9
Oeu004318.1 Olea europaea HOM05D007140 ORTHO05D008539 3.1e-07 60.5 36 86.1
MSTRG.877 Avicennia marina HOM05D007140 ORTHO05D008539 4.1e-07 60.1 36 86.1
Carub.0005s0008 Capsella rubella HOM05D007140 ORTHO05D008539 4.1e-07 60.1 35 85.7
Ca_23696_v3 Cicer arietinum L. HOM05D007140 ORTHO05D008539 4.1e-07 60.1 36 83.3
DCAR_030189 Daucus carota HOM05D007140 ORTHO05D008539 4.1e-07 60.1 34 91.2
Thhalv10001024m.g Eutrema salsugineum HOM05D007140 ORTHO05D008539 4.1e-07 60.1 36 83.3
Medtr1g108700 Medicago truncatula HOM05D007140 ORTHO05D008539 4.1e-07 60.1 36 83.3
TPR.G4844 Trifolium pratense HOM05D007140 ORTHO05D008539 4.1e-07 60.1 36 83.3
TAR622G0373 Trochodendron aralioides HOM05D007140 ORTHO05D008539 4.1e-07 60.1 36 83.3
Oeu044323.1 Olea europaea HOM05D007140 ORTHO05D008539 5.3e-07 59.7 36 83.3
SalBow8G0138 Salvia bowleyana HOM05D007140 ORTHO05D008539 5.3e-07 59.7 36 83.3
Thecc.02G217300 Theobroma cacao HOM05D007140 ORTHO05D008539 5.3e-07 59.7 36 88.9
TWI31G0003 Tripterygium wilfordii HOM05D007140 ORTHO05D008539 5.3e-07 59.7 33 93.9
Lalb_Chr21g0308581 Lupinus albus HOM05D007140 ORTHO05D008539 6.9e-07 59.3 36 80.6
Solyc05g008440.3 Solanum lycopersicum HOM05D007140 ORTHO05D008539 6.9e-07 59.3 36 86.1
Sopen05g004270 Solanum pennellii HOM05D007140 ORTHO05D008539 6.9e-07 59.3 36 86.1
BcaC06g31334 Brassica carinata HOM05D007140 ORTHO05D008539 9.0e-07 58.9 36 80.6
A06p44680 Brassica napus HOM05D007140 ORTHO05D008539 9.0e-07 58.9 36 80.6
C07p31520 Brassica napus HOM05D007140 ORTHO05D008539 9.0e-07 58.9 36 80.6
BraA06t27341Z Brassica rapa HOM05D007140 ORTHO05D008539 9.0e-07 58.9 36 80.6
Nitab4.5_0000350g0190 Nicotiana tabacum HOM05D007140 ORTHO05D008539 9.0e-07 58.9 36 86.1
Phvul.007G035100 Phaseolus vulgaris HOM05D007140 ORTHO05D008539 9.0e-07 58.9 36 80.6
Sp2g12570 Schrenkiella parvula HOM05D007140 ORTHO05D008539 9.0e-07 58.9 36 80.6
VMungo0720G0754 Vigna mungo HOM05D007140 ORTHO05D008539 9.0e-07 58.9 36 80.6
Actinidia15238 Actinidia chinensis HOM05D007140 ORTHO05D008539 1.2e-06 58.5 36 83.3
AL5G10050 Arabidopsis lyrata HOM05D007140 ORTHO05D008539 1.2e-06 58.5 35 82.9
AT2G01100 Arabidopsis thaliana HOM05D007140 ORTHO05D008539 1.2e-06 58.5 35 82.9
BcaC03g16993 Brassica carinata HOM05D007140 ORTHO05D008539 1.2e-06 58.5 36 80.6
C02p49020 Brassica napus HOM05D007140 ORTHO05D008539 1.2e-06 58.5 36 80.6
BolC2t10986H Brassica oleracea HOM05D007140 ORTHO05D008539 1.2e-06 58.5 36 80.6
BolC2t10996H Brassica oleracea HOM05D007140 ORTHO05D008539 1.2e-06 58.5 36 80.6
SGA_v2.0_scaffold50G18534 Striga asiatica HOM05D007140 ORTHO05D008539 1.2e-06 58.5 36 86.1
Zm00001eb334820 Zea mays HOM05D007140 ORTHO05D008539 1.2e-06 58.5 34 85.3
PGSC0003DMG400030513 Solanum tuberosum HOM05D007140 ORTHO05D008539 2.0e-06 57.8 35 85.7
FAN12G3352 Fragaria x ananassa HOM05D007140 ORTHO05D008539 2.6e-06 57.4 33 87.9
A02p31680 Brassica napus HOM05D007140 ORTHO05D008539 3.4e-06 57.0 36 77.8
C02p49060 Brassica napus HOM05D007140 ORTHO05D008539 3.4e-06 57.0 36 77.8
BraA02t08174Z Brassica rapa HOM05D007140 ORTHO05D008539 3.4e-06 57.0 36 77.8
ATR0691G199 Amborella trichopoda HOM05D007140 ORTHO05D008539 5.9e-06 56.2 36 75.0
CARHR143650 Cardamine hirsuta HOM05D007140 ORTHO05D008539 7.6e-06 55.8 35 80.0
ECA233G4197 Erigeron canadensis HOM05D007140 ORTHO05D008539 7.6e-06 55.8 34 85.3
Lalb_Chr06g0165691 Lupinus albus HOM05D007140 ORTHO05D008539 1.0e-05 55.5 35 80.0


User provided reference genes

Program Settings