Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015780 Carpinus fangiana HOM05D004311 ORTHO05D005145 7.7e-297 1023.1 527 100.0
Haze_00714 Corylus avellana HOM05D004311 ORTHO05D005145 1.1e-237 826.6 542 80.8
CiPaw.01G102900 Carya illinoinensis HOM05D004311 ORTHO05D005145 4.2e-186 655.2 492 71.1
QL10p045440 Quercus lobata HOM05D004311 ORTHO05D005145 1.3e-166 590.5 668 53.9
GSVIVG01013563001 Vitis vinifera HOM05D004311 ORTHO05D005145 6.4e-126 455.3 482 56.4
Manes.11G116001 Manihot esculenta HOM05D004311 ORTHO05D005145 5.4e-125 452.2 506 53.2
Thecc.04G184200 Theobroma cacao HOM05D004311 ORTHO05D005145 4.0e-120 436.0 486 54.1
Dinv44218 Davidia involucrata HOM05D004311 ORTHO05D005145 5.3e-120 435.6 505 53.1
Potri.007G124150 Populus trichocarpa HOM05D004311 ORTHO05D005145 9.0e-120 434.9 511 50.5
Ciclev10019191m.g Citrus clementina HOM05D004311 ORTHO05D005145 3.8e-118 429.5 494 53.0
Potri.017G036200 Populus trichocarpa HOM05D004311 ORTHO05D005145 2.4e-117 426.8 507 49.9
Actinidia35905 Actinidia chinensis HOM05D004311 ORTHO05D005145 7.9e-116 421.8 497 48.9
FAN17G0085 Fragaria x ananassa HOM05D004311 ORTHO05D005145 3.0e-115 419.9 476 52.1
TWI34G1341 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 8.7e-115 418.3 484 51.2
Atru.chr5.2612 Acer truncatum HOM05D004311 ORTHO05D005145 1.5e-114 417.5 496 50.4
Atru.chr3.1596 Acer truncatum HOM05D004311 ORTHO05D005145 1.9e-114 417.2 485 52.4
FvH4_4g11290 Fragaria vesca HOM05D004311 ORTHO05D005145 4.8e-113 412.5 475 51.4
Sabra17G0023900 Salix brachista HOM05D004311 ORTHO05D005145 6.2e-113 412.1 514 48.6
FAN07G0445 Fragaria x ananassa HOM05D004311 ORTHO05D005145 8.1e-113 411.8 475 51.6
Gorai.011G145800 Gossypium raimondii HOM05D004311 ORTHO05D005145 2.0e-111 407.1 499 50.1
Gohir.D10G132100 Gossypium hirsutum HOM05D004311 ORTHO05D005145 5.8e-111 405.6 499 49.9
Eucgr.A00251 Eucalyptus grandis HOM05D004311 ORTHO05D005145 3.8e-110 402.9 494 50.2
Gohir.A10G134400 Gossypium hirsutum HOM05D004311 ORTHO05D005145 1.9e-109 400.6 499 49.1
Duzib268G0197 Durio zibethinus HOM05D004311 ORTHO05D005145 8.7e-107 391.7 417 53.5
Rhsim09G0031800 Rhododendron simsii HOM05D004311 ORTHO05D005145 4.9e-102 375.9 588 42.2
PGR083G0820 Punica granatum HOM05D004311 ORTHO05D005145 9.3e-101 371.7 484 46.7
Sed0012126 Sechium edule HOM05D004311 ORTHO05D005145 9.3e-101 371.7 500 46.8
CsaV3_4G003570 Cucumis sativus L. HOM05D004311 ORTHO05D005145 4.6e-100 369.4 495 48.3
Ca_11399_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 5.1e-99 365.9 474 48.9
Ca_11402_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 5.1e-99 365.9 474 48.9
Ca_29593_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 5.1e-99 365.9 474 48.9
MELO3C017696.2 Cucumis melo HOM05D004311 ORTHO05D005145 8.2e-97 358.6 414 51.9
Dinv22688 Davidia involucrata HOM05D004311 ORTHO05D005145 3.1e-96 356.7 431 50.6
Lalb_Chr21g0307601 Lupinus albus HOM05D004311 ORTHO05D005145 5.3e-96 355.9 406 51.2
CANSAT11G1749 Cannabis sativa HOM05D004311 ORTHO05D005145 2.6e-95 353.6 419 51.1
arahy.Tifrunner.gnm1.ann1.TTS68P Arachis hypogaea HOM05D004311 ORTHO05D005145 2.2e-94 350.5 490 46.1
Sopen09g036480 Solanum pennellii HOM05D004311 ORTHO05D005145 2.9e-94 350.1 487 46.2
COL.COLO4_24387 Corchorus olitorius HOM05D004311 ORTHO05D005145 8.4e-94 348.6 446 49.1
Medtr1g116530 Medicago truncatula HOM05D004311 ORTHO05D005145 8.4e-94 348.6 482 48.3
Glyma.20G245800 Glycine max HOM05D004311 ORTHO05D005145 1.1e-93 348.2 487 45.6
arahy.Tifrunner.gnm1.ann1.D3CYL9 Arachis hypogaea HOM05D004311 ORTHO05D005145 1.4e-93 347.8 447 48.5
Solyc09g098560.2 Solanum lycopersicum HOM05D004311 ORTHO05D005145 1.6e-92 344.4 487 45.6
Sc19g0002150 Simmondsia chinensis HOM05D004311 ORTHO05D005145 2.1e-92 344.0 473 44.4
Phvul.007G004100 Phaseolus vulgaris HOM05D004311 ORTHO05D005145 7.9e-92 342.0 484 46.3
Cc03_g13030 Coffea canephora HOM05D004311 ORTHO05D005145 8.7e-91 338.6 433 49.2
RcHm_v2.0_Chr4g0407531 Rosa chinensis HOM05D004311 ORTHO05D005145 4.3e-90 336.3 344 54.9
Lj5g0018220 Lotus japonicus HOM05D004311 ORTHO05D005145 2.2e-89 334.0 477 45.9
Nitab4.5_0006710g0020 Nicotiana tabacum HOM05D004311 ORTHO05D005145 4.8e-89 332.8 484 45.0
Glyma.10G295800 Glycine max HOM05D004311 ORTHO05D005145 1.4e-88 331.3 491 44.8
THA.LOC104821356 Tarenaya hassleriana HOM05D004311 ORTHO05D005145 4.5e-87 326.2 489 45.2
TAR375G1135 Trochodendron aralioides HOM05D004311 ORTHO05D005145 7.7e-87 325.5 538 40.7
TPR.G10413 Trifolium pratense HOM05D004311 ORTHO05D005145 2.2e-86 323.9 404 50.2
Nn2g11494 Nelumbo nucifera HOM05D004311 ORTHO05D005145 4.2e-85 319.7 485 43.3
Actinidia33018 Actinidia chinensis HOM05D004311 ORTHO05D005145 1.2e-84 318.2 459 43.8
Peaxi162Scf00319g00915 Petunia axillaris HOM05D004311 ORTHO05D005145 1.6e-84 317.8 400 47.5
MD04G1038300 Malus domestica HOM05D004311 ORTHO05D005145 2.7e-84 317.0 279 62.7
EL10Ac3g06308 Beta vulgaris HOM05D004311 ORTHO05D005145 3.9e-83 313.2 478 42.5
CAN.G710.65 Capsicum annuum HOM05D004311 ORTHO05D005145 3.9e-83 313.2 496 42.9
Hund12225 Selenicereus undatus HOM05D004311 ORTHO05D005145 5.1e-83 312.8 443 44.0
vmacro00589 Vaccinium macrocarpon HOM05D004311 ORTHO05D005145 8.8e-83 312.0 343 53.1
Psat6g241440 Pisum sativum HOM05D004311 ORTHO05D005145 5.7e-82 309.3 477 42.8
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 1.3e-81 308.1 176 89.2
Lj6A60T46 Lonicera japonica HOM05D004311 ORTHO05D005145 6.3e-81 305.8 346 53.5
SGA_v2.0_scaffold12G06156 Striga asiatica HOM05D004311 ORTHO05D005145 4.1e-80 303.1 470 42.3
VMungo0720G0448 Vigna mungo HOM05D004311 ORTHO05D005145 3.4e-79 300.1 492 41.5
SalBow3G3821 Salvia bowleyana HOM05D004311 ORTHO05D005145 1.0e-78 298.5 476 41.8
Lsat_1_v5_gn_6_54900 Lactuca sativa HOM05D004311 ORTHO05D005145 1.7e-78 297.7 454 42.1
TWI60G0507 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 3.8e-78 296.6 336 50.6
MSTRG.20570 Avicennia marina HOM05D004311 ORTHO05D005145 1.1e-77 295.0 487 42.9
MBI08_g33649_MAGBIO Magnolia biondii HOM05D004311 ORTHO05D005145 1.9e-77 294.3 455 41.5
HanXRQChr07g0186701 Helianthus annuus HOM05D004311 ORTHO05D005145 5.5e-77 292.7 494 38.9
Aqoxy5G04052 Aquilegia oxysepala HOM05D004311 ORTHO05D005145 1.6e-76 291.2 491 39.9
Sabra17G0023400 Salix brachista HOM05D004311 ORTHO05D005145 1.1e-74 285.0 334 48.5
Nitab4.5_0000526g0040 Nicotiana tabacum HOM05D004311 ORTHO05D005145 5.7e-74 282.7 289 54.7
AUR62002610 Chenopodium quinoa HOM05D004311 ORTHO05D005145 1.7e-73 281.2 485 39.4
ClCG07G015850 Citrullus lanatus HOM05D004311 ORTHO05D005145 2.2e-73 280.8 305 56.1
Nitab4.5_0004962g0030 Nicotiana tabacum HOM05D004311 ORTHO05D005145 1.2e-71 275.0 436 42.2
AUR62030033 Chenopodium quinoa HOM05D004311 ORTHO05D005145 5.9e-71 272.7 484 37.8
CDE09G0340 Ceratophyllum demersum HOM05D004311 ORTHO05D005145 8.5e-70 268.9 500 38.0
CDE02G0781 Ceratophyllum demersum HOM05D004311 ORTHO05D005145 1.9e-69 267.7 474 39.0
Migut.G01038 Erythranthe guttata HOM05D004311 ORTHO05D005145 4.7e-68 263.1 447 40.5
DCAR_028443 Daucus carota HOM05D004311 ORTHO05D005145 1.4e-67 261.5 504 38.7
Aa31LG2G1780 Aethionema arabicum HOM05D004311 ORTHO05D005145 2.3e-67 260.8 495 38.8
Sp4g24640 Schrenkiella parvula HOM05D004311 ORTHO05D005145 2.0e-66 257.7 474 39.0
BcaC02g12437 Brassica carinata HOM05D004311 ORTHO05D005145 2.6e-66 257.3 473 37.6
BcaC02g07234 Brassica carinata HOM05D004311 ORTHO05D005145 3.3e-66 256.9 477 38.8
BcaNung03232 Brassica carinata HOM05D004311 ORTHO05D005145 1.7e-65 254.6 490 37.6
BolC4t22005H Brassica oleracea HOM05D004311 ORTHO05D005145 6.3e-65 252.7 473 36.6
C04p03710 Brassica napus HOM05D004311 ORTHO05D005145 8.2e-65 252.3 473 36.6
C04p69770 Brassica napus HOM05D004311 ORTHO05D005145 1.1e-64 251.9 475 38.3
FAN22G0235 Fragaria x ananassa HOM05D004311 ORTHO05D005820 5.3e-64 249.6 244 56.6
Carub.0004s2496 Capsella rubella HOM05D004311 ORTHO05D005145 7.0e-64 249.2 481 38.3
Prupe.1G189100 Prunus persica HOM05D004311 ORTHO05D005145 9.1e-64 248.8 249 57.0
unitig_8.g3035 Utricularia gibba HOM05D004311 ORTHO05D005145 1.0e-62 245.4 403 39.2
PSO675G5961 Papaver somniferum HOM05D004311 ORTHO05D005145 1.7e-62 244.6 466 37.8
AT1G54380 Arabidopsis thaliana HOM05D004311 ORTHO05D005145 2.2e-62 244.2 475 37.7
HPP92_009171 Vanilla planifolia HOM05D004311 ORTHO05D005145 2.2e-62 244.2 458 37.6
A05p03080 Brassica napus HOM05D004311 ORTHO05D005145 3.8e-62 243.4 473 35.7
BraA05t19299Z Brassica rapa HOM05D004311 ORTHO05D005145 6.5e-62 242.7 473 36.4
SHI06503 Sapria himalayana HOM05D004311 ORTHO05D005145 6.5e-62 242.7 329 46.5
CARHR055450 Cardamine hirsuta HOM05D004311 ORTHO05D005145 1.9e-61 241.1 481 36.8
PSO017G7323 Papaver somniferum HOM05D004311 ORTHO05D005145 3.2e-61 240.4 467 37.7
ATR0743G139 Amborella trichopoda HOM05D004311 ORTHO05D005145 1.3e-57 228.4 415 38.6
Lalb_Chr02g0144311 Lupinus albus HOM05D004311 ORTHO05D005145 3.7e-57 226.9 334 45.5
Oeu007717.1 Olea europaea HOM05D004311 ORTHO05D005145 1.1e-56 225.3 301 45.5
Os11g0293300 Oryza sativa ssp. japonica HOM05D004311 ORTHO05D005145 9.1e-56 222.2 424 37.3
Duzib151G0942 Durio zibethinus HOM05D004311 ORTHO05D005145 5.0e-54 216.5 277 48.7
Zm00001eb248350 Zea mays HOM05D004311 ORTHO05D005145 3.2e-53 213.8 411 37.2
Cpa.g.sc73.18 Carica papaya HOM05D004311 ORTHO05D005145 4.2e-53 213.4 223 55.6
Prupe.1G188800 Prunus persica HOM05D004311 ORTHO05D005145 8.8e-51 205.7 246 48.8
SEGI_09077 Sequoiadendron giganteum HOM05D004311 ORTHO05D005145 8.6e-46 189.1 299 39.5
Pp3c18_5230 Physcomitrium patens HOM05D004311 ORTHO05D005145 1.4e-40 171.8 345 34.8
SMO273G0052 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 1.8e-40 171.4 274 40.5
SMO351G0426 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 2.4e-40 171.0 274 39.8
CBR_g48670 Chara braunii HOM05D004311 ORTHO05D005145 2.3e-38 164.5 370 32.2
AagrBONN_evm.TU.Sc2ySwM_228.1282 Anthoceros agrestis HOM05D004311 ORTHO05D005145 8.0e-36 156.0 537 28.1
BcaB06g29252 Brassica carinata HOM05D004311 ORTHO05D005145 9.8e-34 149.1 485 28.9
BcaNung05216 Brassica carinata HOM05D004311 ORTHO05D005145 1.4e-32 145.2 398 31.2
Thhalv10017985m.g Eutrema salsugineum HOM05D004311 ORTHO05D005145 5.0e-30 136.7 214 41.6
Mapoly0064s0042 Marchantia polymorpha HOM05D004311 ORTHO05D005145 2.5e-29 134.4 222 40.5
SMO174G0256 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 2.5e-29 134.4 276 34.1
Nitab4.5_0001049g0080 Nicotiana tabacum HOM05D004311 ORTHO05D005145 3.1e-27 127.5 242 37.6
TWI60G1520 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 9.2e-24 115.9 146 48.6
Sabra07G0100500 Salix brachista HOM05D004311 ORTHO05D005145 3.0e-22 110.9 167 44.3
RcHm_v2.0_Chr4g0407521 Rosa chinensis HOM05D004311 ORTHO05D005145 7.3e-21 106.3 149 43.6
BcaNung00544 Brassica carinata HOM05D004311 ORTHO05D005145 2.3e-19 101.3 102 54.9
vmacro00590 Vaccinium macrocarpon HOM05D004311 ORTHO05D005145 3.1e-19 100.9 163 38.7
MCO03G002 Micromonas commoda HOM05D004311 ORTHO05D005145 2.6e-18 97.8 283 29.7
Hma1.2p1_0429F.1_g151120 Hydrangea macrophylla HOM05D004311 ORTHO05D005145 6.4e-17 93.2 137 44.5
MD04G1038400 Malus domestica HOM05D004311 ORTHO05D005145 7.1e-16 89.7 205 35.1
PGSC0003DMG400021611 Solanum tuberosum HOM05D004311 ORTHO05D005145 3.5e-15 87.4 158 39.9
CANSAT78G0609 Cannabis sativa HOM05D004311 ORTHO05D005145 1.0e-14 85.9 138 43.5
CANSAT01G2758 Cannabis sativa HOM05D004311 ORTHO05D005145 2.3e-14 84.7 141 43.3
CSS0021437 Camellia sinensis var. sinensis HOM05D004311 ORTHO05D005145 1.5e-13 82.0 177 33.9
TAR362G0891 Trochodendron aralioides HOM05D015611 ORTHO05D005145 2.1e-12 78.2 127 40.9
Lj6A60T47 Lonicera japonica HOM05D004311 ORTHO05D005145 6.2e-12 76.6 129 39.5
Cpa.g.sc1876.1 Carica papaya HOM05D004311 ORTHO05D005145 8.1e-12 76.3 118 43.2
Oeu050349.1 Olea europaea HOM05D004311 ORTHO05D005145 6.8e-11 73.2 146 37.7
TAR374G0693 Trochodendron aralioides HOM05D015611 ORTHO05D005145 8.9e-11 72.8 69 52.2
SGA_v2.0_scaffold290G47298 Striga asiatica HOM05D002786 ORTHO05D003493 1.2e-10 72.4 137 36.5
THA.LOC104798849 Tarenaya hassleriana HOM05D004311 ORTHO05D005145 9.9e-10 69.3 147 38.8
TAR374G0043 Trochodendron aralioides HOM05D004311 ORTHO05D005145 3.8e-09 67.4 60 51.7
BolC4t28477H Brassica oleracea HOM05D004311 ORTHO05D005145 6.4e-09 66.6 52 57.7
PRCOL_00004343 Prasinoderma coloniale HOM05D004311 ORTHO05D005145 1.9e-08 65.1 257 30.0
PSO170G3519 Papaver somniferum HOM05D015611 ORTHO05D026019 5.4e-08 63.5 54 50.0
PSO339G2231 Papaver somniferum HOM05D015611 ORTHO05D026019 7.1e-08 63.2 54 51.9
PSO339G0153 Papaver somniferum HOM05D015611 ORTHO05D026019 1.2e-07 62.4 105 40.0
Ah.13g074370 Amaranthus hybridus HOM05D004311 ORTHO05D005145 2.1e-07 61.6 126 34.1
SEGI_08315 Sequoiadendron giganteum HOM05D004311 ORTHO05D005145 6.0e-07 60.1 52 55.8
CARHR137590 Cardamine hirsuta HOM05D004311 ORTHO05D005145 1.3e-06 58.9 48 56.2
PSO384G3421 Papaver somniferum HOM05D015611 ORTHO05D026019 1.3e-06 58.9 101 38.6
DCAR_005511 Daucus carota HOM05D004311 ORTHO05D005145 1.7e-06 58.5 74 43.2
MD13G1258700 Malus domestica HOM05D004311 ORTHO05D005145 3.0e-06 57.8 36 69.4
Cre09.g405650 Chlamydomonas reinhardtii HOM05D004311 ORTHO05D005145 6.6e-06 56.6 84 41.7


User provided reference genes

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