Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015775 Carpinus fangiana HOM05D006262 ORTHO05D007266 3.7e-239 831.2 450 100.0
Haze_00720 Corylus avellana HOM05D006262 ORTHO05D007266 1.4e-193 679.9 551 74.4
QL10p047365 Quercus lobata HOM05D006262 ORTHO05D007266 8.1e-138 494.6 437 65.9
TAR362G0090 Trochodendron aralioides HOM05D006262 ORTHO05D007266 6.0e-125 451.8 398 62.3
Dinv22693 Davidia involucrata HOM05D006262 ORTHO05D007266 2.3e-124 449.9 392 62.0
Hma1.2p1_0597F.1_g186430 Hydrangea macrophylla HOM05D006262 ORTHO05D007266 1.5e-115 420.6 391 59.1
CSS0049911 Camellia sinensis var. sinensis HOM05D006262 ORTHO05D007266 9.7e-115 417.9 437 57.7
Atru.chr3.1601 Acer truncatum HOM05D006262 ORTHO05D007266 9.1e-113 411.4 366 63.4
Atru.chr3.1609 Acer truncatum HOM05D006262 ORTHO05D007266 9.1e-113 411.4 366 63.4
Manes.04G048800 Manihot esculenta HOM05D006262 ORTHO05D007266 1.5e-112 410.6 383 60.1
CANSAT78G0581 Cannabis sativa HOM05D006262 ORTHO05D007266 1.3e-111 407.5 396 58.8
RcHm_v2.0_Chr4g0407651 Rosa chinensis HOM05D006262 ORTHO05D007266 1.4e-110 404.1 464 57.5
FvH4_4g11340 Fragaria vesca HOM05D006262 ORTHO05D007266 1.2e-109 401.0 376 61.7
HanXRQChr15g0494811 Helianthus annuus HOM05D006262 ORTHO05D007266 1.4e-108 397.5 470 52.1
Potri.007G124600 Populus trichocarpa HOM05D006262 ORTHO05D007266 1.4e-108 397.5 389 57.6
Ciclev10020134m.g Citrus clementina HOM05D006262 ORTHO05D007266 8.8e-108 394.8 364 61.8
Prupe.1G187900 Prunus persica HOM05D006262 ORTHO05D007266 1.5e-107 394.0 369 60.7
Rhsim09G0030700 Rhododendron simsii HOM05D006262 ORTHO05D007266 1.5e-107 394.0 388 59.5
MD04G1038000 Malus domestica HOM05D006262 ORTHO05D007266 9.7e-107 391.3 376 59.3
Sed0004128 Sechium edule HOM05D006262 ORTHO05D007266 9.7e-107 391.3 460 50.4
vmacro00601 Vaccinium macrocarpon HOM05D006262 ORTHO05D007266 2.4e-105 386.7 415 55.4
PGR142G3389 Punica granatum HOM05D006262 ORTHO05D007266 1.2e-104 384.4 384 58.6
TWI63G1082 Tripterygium wilfordii HOM05D006262 ORTHO05D007266 2.0e-104 383.6 389 57.6
BcaB01g03403 Brassica carinata HOM05D006262 ORTHO05D007266 2.2e-103 380.2 384 55.2
A03p24130 Brassica napus HOM05D006262 ORTHO05D007266 2.9e-103 379.8 384 54.9
BraA03t11623Z Brassica rapa HOM05D006262 ORTHO05D007266 3.8e-103 379.4 384 54.9
BcaC01g05249 Brassica carinata HOM05D006262 ORTHO05D007266 5.0e-103 379.0 386 55.7
C03p28720 Brassica napus HOM05D006262 ORTHO05D007266 1.1e-102 377.9 386 55.4
BolC3t15234H Brassica oleracea HOM05D006262 ORTHO05D007266 1.1e-102 377.9 384 54.9
Glyma.20G245900 Glycine max HOM05D006262 ORTHO05D007266 1.9e-102 377.1 441 51.0
ClCG07G015820 Citrullus lanatus HOM05D006262 ORTHO05D007266 3.2e-102 376.3 395 53.9
Thhalv10001453m.g Eutrema salsugineum HOM05D006262 ORTHO05D007266 3.2e-102 376.3 386 54.9
Thecc.05G002700 Theobroma cacao HOM05D006262 ORTHO05D007266 3.2e-102 376.3 386 55.4
COL.COLO4_14416 Corchorus olitorius HOM05D006262 ORTHO05D007266 4.2e-102 375.9 386 56.5
MBI08_g33651_MAGBIO Magnolia biondii HOM05D006262 ORTHO05D007266 5.5e-102 375.6 381 55.9
Sp4g25360 Schrenkiella parvula HOM05D006262 ORTHO05D007266 1.2e-101 374.4 386 54.4
Duzib093G0344 Durio zibethinus HOM05D006262 ORTHO05D007266 3.6e-101 372.9 363 58.4
AT2G43235 Arabidopsis thaliana HOM05D006262 ORTHO05D007266 8.0e-101 371.7 370 55.9
MELO3C017699.2 Cucumis melo HOM05D006262 ORTHO05D007266 8.0e-101 371.7 397 53.1
Nn1g09825 Nelumbo nucifera HOM05D006262 ORTHO05D007266 8.0e-101 371.7 363 55.1
Carub.0004s2570 Capsella rubella HOM05D006262 ORTHO05D007266 1.8e-100 370.5 369 56.4
AL4G41890 Arabidopsis lyrata HOM05D006262 ORTHO05D007266 6.7e-100 368.6 370 55.9
DCAR_023918 Daucus carota HOM05D006262 ORTHO05D007266 2.6e-99 366.7 384 53.9
Phvul.007G004000 Phaseolus vulgaris HOM05D006262 ORTHO05D007266 3.3e-99 366.3 440 50.7
CARHR138310 Cardamine hirsuta HOM05D006262 ORTHO05D007266 5.7e-99 365.5 388 53.9
Lalb_Chr02g0144321 Lupinus albus HOM05D006262 ORTHO05D007266 7.4e-99 365.2 383 55.6
CsaV3_4G003530 Cucumis sativus L. HOM05D006262 ORTHO05D007266 2.2e-98 363.6 394 52.8
VMungo0720G2273 Vigna mungo HOM05D006262 ORTHO05D007266 3.7e-98 362.8 454 49.8
ECA238G4140 Erigeron canadensis HOM05D000005 ORTHO05D000012 6.3e-98 362.1 391 54.5
Lsat_1_v5_gn_2_51881 Lactuca sativa HOM05D006262 ORTHO05D007266 1.4e-97 360.9 391 54.0
Ca_29592_v3 Cicer arietinum L. HOM05D006262 ORTHO05D007266 3.1e-97 359.8 387 55.3
Aa31LG1G25040 Aethionema arabicum HOM05D006262 ORTHO05D007266 5.3e-97 359.0 401 54.1
arahy.Tifrunner.gnm1.ann1.6Y9ITK Arachis hypogaea HOM05D006262 ORTHO05D007266 5.3e-97 359.0 386 54.4
Eucgr.A00253 Eucalyptus grandis HOM05D006262 ORTHO05D007266 7.0e-97 358.6 333 60.1
PSO675G4698 Papaver somniferum HOM05D006262 ORTHO05D007266 7.0e-97 358.6 452 47.3
Cc03_g13170 Coffea canephora HOM05D006262 ORTHO05D007266 2.6e-96 356.7 393 52.4
Lj5g0018354 Lotus japonicus HOM05D006262 ORTHO05D007266 4.5e-96 355.9 391 52.4
arahy.Tifrunner.gnm1.ann1.BL35NN Arachis hypogaea HOM05D006262 ORTHO05D007266 6.5e-95 352.1 350 57.1
PSO017G4626 Papaver somniferum HOM05D006262 ORTHO05D007266 3.6e-93 346.3 390 51.3
PGSC0003DMG400021613 Solanum tuberosum HOM05D006262 ORTHO05D007266 4.7e-93 345.9 386 52.6
CiPaw.01G102600 Carya illinoinensis HOM05D006262 ORTHO05D007266 1.8e-92 344.0 310 63.2
Lj3A232G38 Lonicera japonica HOM05D006262 ORTHO05D007266 4.0e-92 342.8 395 50.6
Sc13g0007690 Simmondsia chinensis HOM05D006262 ORTHO05D007266 6.8e-92 342.0 383 50.9
Solyc09g098530.4 Solanum lycopersicum HOM05D006262 ORTHO05D007266 3.4e-91 339.7 370 54.6
EL10Ac3g06302 Beta vulgaris HOM05D006262 ORTHO05D007266 7.5e-91 338.6 414 49.0
Sopen09g036450 Solanum pennellii HOM05D006262 ORTHO05D007266 7.5e-91 338.6 370 54.3
Sabra07G0100700 Salix brachista HOM05D006262 ORTHO05D002297 1.3e-90 337.8 386 51.3
Aqoxy2G04115 Aquilegia oxysepala HOM05D006262 ORTHO05D007266 3.7e-90 336.3 405 48.9
ATR0743G268 Amborella trichopoda HOM05D006262 ORTHO05D007266 1.4e-89 334.3 389 50.4
Gohir.D04G136100 Gossypium hirsutum HOM05D006262 ORTHO05D007266 1.8e-89 334.0 366 53.8
Gorai.012G119900 Gossypium raimondii HOM05D006262 ORTHO05D007266 4.1e-89 332.8 366 53.8
Gohir.A04G096300 Gossypium hirsutum HOM05D006262 ORTHO05D007266 1.2e-88 331.3 366 53.8
Ah.07g204100 Amaranthus hybridus HOM05D006262 ORTHO05D007266 3.8e-87 326.2 381 49.9
Medtr1g116540 Medicago truncatula HOM05D006262 ORTHO05D007266 1.9e-86 323.9 401 51.1
GSVIVG01013579001 Vitis vinifera HOM05D006262 ORTHO05D007266 3.6e-85 319.7 255 65.5
TPR.G10421 Trifolium pratense HOM05D006262 ORTHO05D007266 1.8e-84 317.4 428 47.2
Migut.N03113 Erythranthe guttata HOM05D006262 ORTHO05D007266 9.8e-83 311.6 357 48.7
Hund22599 Selenicereus undatus HOM05D006262 ORTHO05D007266 1.4e-81 307.8 397 47.6
HPP92_024424 Vanilla planifolia HOM05D006262 ORTHO05D007266 1.8e-81 307.4 385 44.9
MSTRG.24585 Avicennia marina HOM05D006262 ORTHO05D007266 2.4e-81 307.0 358 50.3
SalBow6G1208 Salvia bowleyana HOM05D006262 ORTHO05D007266 3.5e-80 303.1 386 46.1
CDE09G0849 Ceratophyllum demersum HOM05D006262 ORTHO05D007266 5.0e-79 299.3 299 55.9
Psat6g241480 Pisum sativum HOM05D006262 ORTHO05D007266 2.3e-76 290.4 378 48.4
unitig_27.g25149 Utricularia gibba HOM05D006262 ORTHO05D007266 3.7e-74 283.1 371 45.6
Ca_11400_v3 Cicer arietinum L. HOM05D006262 ORTHO05D007266 3.2e-73 280.0 387 48.1
Ca_11403_v3 Cicer arietinum L. HOM05D006262 ORTHO05D007266 4.5e-72 276.2 382 47.9
Os05g0299200 Oryza sativa ssp. japonica HOM05D006262 ORTHO05D007266 1.7e-71 274.2 440 42.0
Oeu029569.3 Olea europaea HOM05D006262 ORTHO05D007266 5.0e-71 272.7 475 40.0
Zm00001eb350760 Zea mays HOM05D006262 ORTHO05D007266 1.4e-68 264.6 393 44.0
AUR62002605 Chenopodium quinoa HOM05D006262 ORTHO05D007266 4.4e-67 259.6 380 43.9
AUR62030023 Chenopodium quinoa HOM05D006262 ORTHO05D007266 9.8e-67 258.5 452 45.1
SEGI_17174 Sequoiadendron giganteum HOM05D006262 ORTHO05D007266 8.9e-60 235.3 395 39.0
AagrBONN_evm.TU.Sc2ySwM_344.5117 Anthoceros agrestis HOM05D006262 ORTHO05D007266 2.4e-57 227.3 395 39.5
Mapoly0004s0159 Marchantia polymorpha HOM05D006262 ORTHO05D007266 2.7e-56 223.8 395 35.9
Nitab4.5_0002908g0080 Nicotiana tabacum HOM05D006262 ORTHO05D007266 1.1e-54 218.4 163 66.3
Peaxi162Scf00286g00119 Petunia axillaris HOM05D006262 ORTHO05D007266 1.2e-53 214.9 168 63.7
Nitab4.5_0001049g0110 Nicotiana tabacum HOM05D006262 ORTHO05D007266 2.1e-53 214.2 161 65.2
Hma1.2p1_0597F.1_g186420 Hydrangea macrophylla HOM05D006262 ORTHO05D007266 4.1e-49 199.9 136 77.2
SMO351G0235 Selaginella moellendorffii HOM05D006262 ORTHO05D007266 2.1e-48 197.6 310 42.9
SGA_v2.0_scaffold31G12573 Striga asiatica HOM05D006262 ORTHO05D007266 3.9e-47 193.4 379 36.9
Pp3c12_3930 Physcomitrium patens HOM05D006262 ORTHO05D007266 8.6e-47 192.2 402 35.1
Pp3c9_3680 Physcomitrium patens HOM05D006262 ORTHO05D007266 3.9e-39 166.8 353 34.3
Hma1.2p1_0597F.1_g186440 Hydrangea macrophylla HOM05D006262 ORTHO05D007266 2.0e-35 154.5 196 45.9
Cpa.g.sc71.28 Carica papaya HOM05D006262 ORTHO05D007266 1.3e-34 151.8 237 43.5
Nitab4.5_0001049g0100 Nicotiana tabacum HOM05D006262 ORTHO05D007266 2.1e-32 144.4 219 43.8
Nitab4.5_0002908g0070 Nicotiana tabacum HOM05D006262 ORTHO05D007266 1.3e-31 141.7 219 43.8
Cpa.g.sc71.30 Carica papaya HOM05D006262 ORTHO05D007266 1.8e-28 131.3 86 80.2
FAN17G0796 Fragaria x ananassa HOM05D006262 ORTHO05D007266 2.0e-27 127.9 83 75.9
Peaxi162Scf00286g10017 Petunia axillaris HOM05D006262 ORTHO05D007266 1.1e-22 112.1 252 34.1
QL09p046233 Quercus lobata HOM05D006262 ORTHO05D007266 1.6e-21 108.2 83 73.5
CAN.G688.4 Capsicum annuum HOM05D006262 ORTHO05D007266 3.7e-21 107.1 75 65.3
PRCOL_00005486 Prasinoderma coloniale HOM05D006262 ORTHO05D007266 3.4e-19 100.5 281 32.4
MCO03G554 Micromonas commoda HOM05D006262 ORTHO05D007266 3.8e-18 97.1 312 29.2
CAN.G51.2 Capsicum annuum HOM05D006262 ORTHO05D007266 3.0e-15 87.4 75 57.3
FAN07G2249 Fragaria x ananassa HOM05D006262 ORTHO05D007266 1.3e-13 82.0 46 87.0
GSVIVG01020265001 Vitis vinifera HOM05D006262 ORTHO05D007266 2.1e-13 81.3 123 40.7
Cre01.g049900 Chlamydomonas reinhardtii HOM05D006262 ORTHO05D007266 4.8e-13 80.1 327 27.2
FvH4_c17g00080 Fragaria vesca HOM05D006262 ORTHO05D007266 1.8e-12 78.2 49 77.6
FAN07G1916 Fragaria x ananassa HOM05D006262 ORTHO05D007266 1.8e-12 78.2 54 72.2
AagrBONN_evm.TU.Sc2ySwM_368.1862 Anthoceros agrestis HOM05D005935 ORTHO05D007012 2.9e-10 70.9 72 55.6
Glyma.10G295900 Glycine max HOM05D006262 ORTHO05D007266 2.5e-09 67.8 147 38.8
BraA10t42873Z Brassica rapa HOM05D006262 ORTHO05D007266 1.8e-07 61.6 191 30.4
FAN05G5634 Fragaria x ananassa HOM05D010299 ORTHO05D019146 3.3e-06 57.4 104 41.3
CAN.G1343.18 Capsicum annuum HOM05D006262 ORTHO05D007266 7.4e-06 56.2 53 50.9


User provided reference genes

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