Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015740 Carpinus fangiana HOM05D005773 ORTHO05D006930 1.2e-147 526.6 273 100.0
Haze_00756 Corylus avellana HOM05D005773 ORTHO05D006930 2.0e-123 446.0 368 69.0
QL06p014502 Quercus lobata HOM05D005773 ORTHO05D006930 7.3e-73 278.1 253 64.8
CiPaw.01G128000 Carya illinoinensis HOM05D005773 ORTHO05D006930 5.2e-71 271.9 272 61.4
CSS0030034 Camellia sinensis var. sinensis HOM05D005773 ORTHO05D006930 4.1e-52 209.1 300 46.0
MD13G1156700 Malus domestica HOM05D005773 ORTHO05D006930 1.1e-44 184.5 250 49.2
Prupe.1G103600 Prunus persica HOM05D005773 ORTHO05D006930 1.4e-44 184.1 253 47.8
TAR633G1051 Trochodendron aralioides HOM05D005773 ORTHO05D006930 4.2e-44 182.6 250 50.8
Potri.010G003200 Populus trichocarpa HOM05D005773 ORTHO05D006930 1.3e-40 171.0 250 50.0
Manes.03G212700 Manihot esculenta HOM05D005773 ORTHO05D006930 2.1e-40 170.2 246 48.0
MD16G1134300 Malus domestica HOM05D005773 ORTHO05D006930 4.0e-39 166.0 251 45.0
Sabra10G0002700 Salix brachista HOM05D005773 ORTHO05D006930 2.9e-37 159.8 246 48.4
MBI19_g30285_MAGBIO Magnolia biondii HOM05D005773 ORTHO05D006930 8.4e-37 158.3 250 43.6
Oeu012285.1 Olea europaea HOM05D005773 ORTHO05D006930 4.2e-36 156.0 265 42.6
Nn4g25353 Nelumbo nucifera HOM05D005773 ORTHO05D006930 2.7e-35 153.3 247 43.7
Dinv24720 Davidia involucrata HOM05D005773 ORTHO05D006930 7.8e-35 151.8 257 42.8
FAN07G0153 Fragaria x ananassa HOM05D005773 ORTHO05D006930 3.9e-34 149.4 197 47.7
Actinidia18514 Actinidia chinensis HOM05D005773 ORTHO05D006930 5.1e-34 149.1 288 40.3
FvH4_4g21650 Fragaria vesca HOM05D005773 ORTHO05D006930 1.1e-33 147.9 197 47.2
RcHm_v2.0_Chr4g0427881 Rosa chinensis HOM05D005773 ORTHO05D006930 1.5e-33 147.5 258 42.6
FAN17G1594 Fragaria x ananassa HOM05D005773 ORTHO05D006930 5.6e-33 145.6 197 46.2
Rhsim04G0249100 Rhododendron simsii HOM05D005773 ORTHO05D006930 6.2e-32 142.1 275 38.9
TWI53G0973 Tripterygium wilfordii HOM05D005773 ORTHO05D006930 1.1e-31 141.4 238 43.7
Hund12260 Selenicereus undatus HOM05D005773 ORTHO05D006930 6.9e-31 138.7 265 39.2
TPR.G12556 Trifolium pratense HOM05D005773 ORTHO05D006930 2.0e-30 137.1 202 44.1
Aqoxy2G02494 Aquilegia oxysepala HOM05D005773 ORTHO05D006930 4.5e-30 136.0 195 42.1
Hma1.2p1_1449F.1_g284070 Hydrangea macrophylla HOM05D005773 ORTHO05D006930 9.9e-30 134.8 229 42.4
GSVIVG01017699001 Vitis vinifera HOM05D005773 ORTHO05D006930 1.3e-29 134.4 208 46.2
Nn3g21943 Nelumbo nucifera HOM05D005773 ORTHO05D006930 2.2e-29 133.7 254 37.8
Actinidia01071 Actinidia chinensis HOM05D005773 ORTHO05D006930 2.9e-29 133.3 147 51.7
Lalb_Chr13g0299011 Lupinus albus HOM05D005773 ORTHO05D006930 4.9e-29 132.5 256 39.5
PGR004G1534 Punica granatum HOM05D005773 ORTHO05D006930 8.4e-29 131.7 100 64.0
Ca_21368_v3 Cicer arietinum L. HOM05D005773 ORTHO05D006930 1.1e-28 131.3 126 51.6
Duzib138G1928 Durio zibethinus HOM05D005773 ORTHO05D006930 1.4e-28 131.0 249 38.2
Phvul.003G123000 Phaseolus vulgaris HOM05D005773 ORTHO05D006930 2.4e-28 130.2 195 41.0
CANSAT78G1256 Cannabis sativa HOM05D005773 ORTHO05D006930 4.2e-28 129.4 245 39.6
Atru.chr5.865 Acer truncatum HOM05D005773 ORTHO05D006930 9.3e-28 128.3 236 41.1
Medtr4g124080 Medicago truncatula HOM05D005773 ORTHO05D006930 1.2e-27 127.9 138 47.8
Duzib133G1161 Durio zibethinus HOM05D005773 ORTHO05D006930 2.1e-27 127.1 241 36.9
Sc25g0002150 Simmondsia chinensis HOM05D005773 ORTHO05D006930 2.1e-27 127.1 259 36.7
Glyma.13G118300 Glycine max HOM05D005773 ORTHO05D006930 2.7e-27 126.7 190 39.5
VMungo1215G1523 Vigna mungo HOM05D005773 ORTHO05D006930 2.7e-27 126.7 195 40.5
Glyma.17G041600 Glycine max HOM05D005773 ORTHO05D006930 6.0e-27 125.6 134 50.7
Thecc.01G324900 Theobroma cacao HOM05D005773 ORTHO05D006930 6.0e-27 125.6 269 38.7
Aqoxy2G02493 Aquilegia oxysepala HOM05D005773 ORTHO05D006930 7.9e-27 125.2 253 39.1
Lj4g0014107 Lotus japonicus HOM05D005773 ORTHO05D006930 3.0e-26 123.2 256 37.5
Gohir.D11G109200 Gossypium hirsutum HOM05D005773 ORTHO05D006930 6.7e-26 122.1 254 36.2
Eucgr.H04131 Eucalyptus grandis HOM05D005773 ORTHO05D006930 8.7e-26 121.7 244 40.2
arahy.Tifrunner.gnm1.ann1.9W2SDJ Arachis hypogaea HOM05D005773 ORTHO05D006930 1.1e-25 121.3 137 48.9
arahy.Tifrunner.gnm1.ann1.RWG9MN Arachis hypogaea HOM05D005773 ORTHO05D006930 1.1e-25 121.3 137 48.9
EL10Ac3g06235 Beta vulgaris HOM05D005773 ORTHO05D006930 1.1e-25 121.3 230 37.0
MSTRG.14719 Avicennia marina HOM05D005773 ORTHO05D006930 1.5e-25 120.9 256 37.5
Cc03_g00040 Coffea canephora HOM05D005773 ORTHO05D006930 2.5e-25 120.2 257 39.3
Gorai.007G116800 Gossypium raimondii HOM05D005773 ORTHO05D006930 2.5e-25 120.2 254 35.8
arahy.Tifrunner.gnm1.ann1.F7JGYB Arachis hypogaea HOM05D005773 ORTHO05D006930 3.3e-25 119.8 138 47.8
MSTRG.13210 Avicennia marina HOM05D005773 ORTHO05D006930 4.3e-25 119.4 253 37.9
arahy.Tifrunner.gnm1.ann1.YBC12K Arachis hypogaea HOM05D005773 ORTHO05D006930 7.4e-25 118.6 133 47.4
Gohir.A11G104400 Gossypium hirsutum HOM05D005773 ORTHO05D006930 2.1e-24 117.1 254 35.8
Psat0s1206g0160 Pisum sativum HOM05D005773 ORTHO05D006930 6.2e-24 115.5 255 32.5
SalBow7G0248 Salvia bowleyana HOM05D005773 ORTHO05D006930 8.1e-24 115.2 244 37.3
Carub.0001s3743 Capsella rubella HOM05D005773 ORTHO05D006930 1.8e-23 114.0 249 35.3
SalBow7G4520 Salvia bowleyana HOM05D005773 ORTHO05D006930 1.8e-23 114.0 245 37.1
Ciclev10005574m.g Citrus clementina HOM05D005773 ORTHO05D006930 3.1e-23 113.2 243 39.1
AL1G54900 Arabidopsis lyrata HOM05D005773 ORTHO05D006930 6.9e-23 112.1 248 34.7
AT1G48300 Arabidopsis thaliana HOM05D005773 ORTHO05D006930 6.9e-23 112.1 249 35.3
Potri.002G187300 Populus trichocarpa HOM05D005773 ORTHO05D006930 6.9e-23 112.1 254 35.0
arahy.Tifrunner.gnm1.ann1.AWA2M3 Arachis hypogaea HOM05D000254 ORTHO05D000165 1.5e-22 110.9 134 46.3
Nn3g21941 Nelumbo nucifera HOM05D005773 ORTHO05D006930 2.0e-22 110.5 248 35.9
Migut.H01460 Erythranthe guttata HOM05D005773 ORTHO05D006930 2.6e-22 110.2 249 33.7
Cpa.g.sc146.13 Carica papaya HOM05D005773 ORTHO05D006930 3.4e-22 109.8 260 35.4
COL.COLO4_23133 Corchorus olitorius HOM05D005773 ORTHO05D006930 4.5e-22 109.4 223 38.1
ECA246G2714 Erigeron canadensis HOM05D005773 ORTHO05D006930 7.6e-22 108.6 106 50.0
PSO210G3229 Papaver somniferum HOM05D005773 ORTHO05D006930 2.2e-21 107.1 242 35.1
BcaB04g17451 Brassica carinata HOM05D005773 ORTHO05D006930 3.8e-21 106.3 246 35.4
Thhalv10011577m.g Eutrema salsugineum HOM05D005773 ORTHO05D006930 4.9e-21 105.9 251 33.9
THA.LOC104802618 Tarenaya hassleriana HOM05D005773 ORTHO05D006930 6.5e-21 105.5 273 36.3
Ciclev10020833m.g Citrus clementina HOM05D005773 ORTHO05D006930 8.4e-21 105.1 129 42.6
PGSC0003DMG400004596 Solanum tuberosum HOM05D005773 ORTHO05D006930 1.1e-20 104.8 282 35.1
A08p04910 Brassica napus HOM05D005773 ORTHO05D006930 1.9e-20 104.0 252 33.7
BraA08t32517Z Brassica rapa HOM05D005773 ORTHO05D006930 1.9e-20 104.0 252 33.7
CsaV3_3G015560 Cucumis sativus L. HOM05D005773 ORTHO05D006930 1.9e-20 104.0 109 49.5
C08p05240 Brassica napus HOM05D005773 ORTHO05D006930 2.5e-20 103.6 247 33.2
Ah.07g203560 Amaranthus hybridus HOM05D005773 ORTHO05D006930 4.2e-20 102.8 242 33.5
Sed0009476 Sechium edule HOM05D005773 ORTHO05D006930 7.1e-20 102.1 94 54.3
Aa31LG10G5470 Aethionema arabicum HOM05D005773 ORTHO05D006930 1.6e-19 100.9 247 32.4
BolC8t47338H Brassica oleracea HOM05D005773 ORTHO05D006930 2.1e-19 100.5 244 33.6
Nitab4.5_0000978g0060 Nicotiana tabacum HOM05D005773 ORTHO05D006930 2.1e-19 100.5 290 34.5
Sp1g35250 Schrenkiella parvula HOM05D005773 ORTHO05D006930 2.1e-19 100.5 248 32.7
Manes.01G234700 Manihot esculenta HOM05D005773 ORTHO05D006930 2.7e-19 100.1 190 38.4
Zm00001eb417470 Zea mays HOM05D005773 ORTHO05D006930 2.7e-19 100.1 90 57.8
AUR62023652 Chenopodium quinoa HOM05D005773 ORTHO05D006930 3.5e-19 99.8 180 37.2
ClCG05G006890 Citrullus lanatus HOM05D005773 ORTHO05D006930 3.5e-19 99.8 95 51.6
Os05g0137300 Oryza sativa ssp. japonica HOM05D005773 ORTHO05D006930 3.5e-19 99.8 203 39.4
Sopen12g033600 Solanum pennellii HOM05D005773 ORTHO05D006930 3.5e-19 99.8 287 34.8
Sed0002380 Sechium edule HOM05D005773 ORTHO05D006930 4.6e-19 99.4 90 53.3
Solyc12g098850.2 Solanum lycopersicum HOM05D005773 ORTHO05D006930 7.9e-19 98.6 286 34.6
CDE02G3050 Ceratophyllum demersum HOM05D005773 ORTHO05D006930 1.0e-18 98.2 251 31.5
AUR62002540 Chenopodium quinoa HOM05D005773 ORTHO05D006930 1.0e-18 98.2 230 32.2
MELO3C006755.2 Cucumis melo HOM05D005773 ORTHO05D006930 1.0e-18 98.2 109 48.6
Nitab4.5_0012375g0020 Nicotiana tabacum HOM05D005773 ORTHO05D006930 1.0e-18 98.2 280 32.1
CARHR037910 Cardamine hirsuta HOM05D005773 ORTHO05D006930 2.3e-18 97.1 241 32.4
unitig_26.g9353 Utricularia gibba HOM05D005773 ORTHO05D006930 3.9e-18 96.3 219 35.2
Peaxi162Scf00323g00817 Petunia axillaris HOM05D005773 ORTHO05D006930 5.1e-18 95.9 290 31.7
CAN.G484.97 Capsicum annuum HOM05D005773 ORTHO05D006930 6.7e-18 95.5 272 31.6
SGA_v2.0_scaffold109G31080 Striga asiatica HOM05D005773 ORTHO05D006930 1.1e-17 94.7 242 33.9
CDE09G0185 Ceratophyllum demersum HOM05D005773 ORTHO05D006930 7.4e-17 92.0 249 32.9
TAR625G0572 Trochodendron aralioides HOM05D005773 ORTHO05D006930 4.8e-16 89.4 93 50.5
HanXRQChr05g0148961 Helianthus annuus HOM05D005773 ORTHO05D006930 1.4e-15 87.8 241 32.4
Lsat_1_v5_gn_6_118320 Lactuca sativa HOM05D005773 ORTHO05D006930 1.8e-15 87.4 244 34.0
ATR0796G282 Amborella trichopoda HOM05D005773 ORTHO05D006930 4.1e-15 86.3 225 33.8
arahy.Tifrunner.gnm1.ann1.EN1MLR Arachis hypogaea HOM05D005773 ORTHO05D006930 4.1e-15 86.3 109 45.9
Atru.chr4.3177 Acer truncatum HOM05D005773 ORTHO05D006930 9.0e-15 85.1 191 36.6
BcaC07g37153 Brassica carinata HOM05D005773 ORTHO05D006930 6.5e-13 79.0 221 32.6
TAR624G0439 Trochodendron aralioides HOM05D005773 ORTHO05D006930 3.2e-12 76.6 97 43.3
Hma1.2p1_1067F.1_g253800 Hydrangea macrophylla HOM05D005773 ORTHO05D006930 1.6e-11 74.3 66 56.1
CARHR041400 Cardamine hirsuta HOM05D005773 ORTHO05D006930 2.3e-10 70.5 50 60.0
SEGI_38196 Sequoiadendron giganteum HOM05D005773 ORTHO05D006930 4.8e-08 62.8 108 36.1
Cpa.g.sc57.12 Carica papaya HOM05D005773 ORTHO05D006930 2.4e-07 60.5 44 61.4
SEGI_24223 Sequoiadendron giganteum HOM05D005773 ORTHO05D006930 3.1e-07 60.1 108 34.3
HPP92_012765 Vanilla planifolia HOM05D005773 ORTHO05D006930 9.0e-07 58.5 254 27.6
Atru.chr9.2474 Acer truncatum HOM05D000366 ORTHO05D001950 3.4e-06 56.6 76 38.2


User provided reference genes

Program Settings