Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015733 Carpinus fangiana HOM05D005860 ORTHO05D006977 7.6e-188 661.0 523 100.0
CiPaw.04G034700 Carya illinoinensis HOM05D005860 ORTHO05D006977 1.4e-56 224.9 151 78.1
PGR083G1804 Punica granatum HOM05D005860 ORTHO05D006977 5.0e-54 216.5 188 61.7
COL.COLO4_03595 Corchorus olitorius HOM05D005860 ORTHO05D006977 1.4e-53 214.9 151 74.8
Glyma.09G171700 Glycine max HOM05D005860 ORTHO05D006977 1.9e-53 214.5 184 69.0
Manes.15G158200 Manihot esculenta HOM05D005860 ORTHO05D006977 1.6e-52 211.5 151 72.8
QL02p072028 Quercus lobata HOM05D005860 ORTHO05D006977 2.1e-52 211.1 151 70.9
Cpa.g.sc171.37 Carica papaya HOM05D005860 ORTHO05D006977 2.7e-52 210.7 149 71.8
Eucgr.J02311 Eucalyptus grandis HOM05D005860 ORTHO05D006977 6.1e-52 209.5 154 70.1
TAR622G0256 Trochodendron aralioides HOM05D005860 ORTHO05D006977 1.0e-51 208.8 151 69.5
Lj2g0013553 Lotus japonicus HOM05D005860 ORTHO05D006977 2.3e-51 207.6 150 70.7
Gohir.A10G079300 Gossypium hirsutum HOM05D005860 ORTHO05D006977 3.0e-51 207.2 152 70.4
Nn4g22386 Nelumbo nucifera HOM05D005860 ORTHO05D006977 5.1e-51 206.5 153 69.9
Phvul.004G147000 Phaseolus vulgaris HOM05D005860 ORTHO05D006977 8.8e-51 205.7 154 70.8
Sabra17G0063700 Salix brachista HOM05D005860 ORTHO05D006977 1.1e-50 205.3 153 69.3
Thecc.08G160800 Theobroma cacao HOM05D005860 ORTHO05D006977 1.5e-50 204.9 151 72.2
Atru.chr4.382 Acer truncatum HOM05D005860 ORTHO05D006977 2.6e-50 204.1 153 71.2
RcHm_v2.0_Chr2g0174841 Rosa chinensis HOM05D005860 ORTHO05D006977 2.6e-50 204.1 151 68.9
Gorai.011G077700 Gossypium raimondii HOM05D005860 ORTHO05D006977 3.3e-50 203.8 152 69.1
Haze_14838 Corylus avellana HOM05D005860 ORTHO05D006977 4.4e-50 203.4 186 60.8
Duzib116G0811 Durio zibethinus HOM05D005860 ORTHO05D006977 9.7e-50 202.2 153 69.9
VMungo0464G0018 Vigna mungo HOM05D005860 ORTHO05D006977 9.7e-50 202.2 154 68.8
Gohir.D10G072200 Gossypium hirsutum HOM05D005860 ORTHO05D006977 1.7e-49 201.4 152 68.4
Potri.017G067600 Populus trichocarpa HOM05D005860 ORTHO05D006977 1.7e-49 201.4 153 68.0
TWI56G1326 Tripterygium wilfordii HOM05D005860 ORTHO05D006977 2.2e-49 201.1 153 69.3
FAN05G4081 Fragaria x ananassa HOM05D005860 ORTHO05D006977 8.2e-49 199.1 150 68.7
Glyma.05G075600 Glycine max HOM05D005860 ORTHO05D006977 8.2e-49 199.1 154 67.5
Dinv19535 Davidia involucrata HOM05D005860 ORTHO05D006977 1.1e-48 198.7 164 64.0
Ciclev10011572m.g Citrus clementina HOM05D005860 ORTHO05D006977 1.8e-48 198.0 151 69.5
Sed0023405 Sechium edule HOM05D005860 ORTHO05D006977 1.8e-48 198.0 151 67.5
FvH4_6g53060 Fragaria vesca HOM05D005860 ORTHO05D006977 2.4e-48 197.6 150 68.7
FAN14G2391 Fragaria x ananassa HOM05D005860 ORTHO05D006977 2.4e-48 197.6 150 68.7
PSO782G4049 Papaver somniferum HOM05D005860 ORTHO05D006977 4.1e-48 196.8 152 65.1
FAN09G0694 Fragaria x ananassa HOM05D005860 ORTHO05D006977 9.1e-48 195.7 150 68.0
Phvul.004G055500 Phaseolus vulgaris HOM05D005860 ORTHO05D006977 9.1e-48 195.7 154 64.9
ClCG01G016270 Citrullus lanatus HOM05D005860 ORTHO05D006977 1.2e-47 195.3 151 67.5
MELO3C007497.2 Cucumis melo HOM05D005860 ORTHO05D006977 2.0e-47 194.5 153 64.1
arahy.Tifrunner.gnm1.ann1.SB3XQV Arachis hypogaea HOM05D005860 ORTHO05D006977 4.5e-47 193.4 151 66.2
Migut.K01447 Erythranthe guttata HOM05D005860 ORTHO05D006977 4.5e-47 193.4 167 60.5
Hma1.2p1_1219F.1_g267900 Hydrangea macrophylla HOM05D005860 ORTHO05D006977 4.5e-47 193.4 165 63.0
SalBow1G3206 Salvia bowleyana HOM05D005860 ORTHO05D006977 4.5e-47 193.4 167 61.7
SalBow7G2829 Salvia bowleyana HOM05D005860 ORTHO05D006977 4.5e-47 193.4 167 61.7
CsaV3_6G042570 Cucumis sativus L. HOM05D005860 ORTHO05D006977 5.9e-47 193.0 153 64.7
arahy.Tifrunner.gnm1.ann1.WZ54PF Arachis hypogaea HOM05D005860 ORTHO05D006977 7.7e-47 192.6 151 65.6
GSVIVG01001819001 Vitis vinifera HOM05D005860 ORTHO05D006977 7.7e-47 192.6 153 64.7
Cc02_g00900 Coffea canephora HOM05D005860 ORTHO05D006977 1.0e-46 192.2 166 61.4
TAR629G2046 Trochodendron aralioides HOM05D005860 ORTHO05D006977 1.3e-46 191.8 153 66.0
PSO063G3212 Papaver somniferum HOM05D005860 ORTHO05D006977 2.2e-46 191.0 152 64.5
MD17G1015100 Malus domestica HOM05D005860 ORTHO05D006977 5.0e-46 189.9 155 65.2
Sc16g0003100 Simmondsia chinensis HOM05D005860 ORTHO05D006977 5.0e-46 189.9 163 63.2
DCAR_021767 Daucus carota HOM05D005860 ORTHO05D006977 6.5e-46 189.5 163 60.7
Glyma.19G075100 Glycine max HOM05D005860 ORTHO05D006977 6.5e-46 189.5 154 64.3
Ah.03g142080 Amaranthus hybridus HOM05D005860 ORTHO05D006977 1.9e-45 188.0 163 64.4
Aqoxy5G03469 Aquilegia oxysepala HOM05D005860 ORTHO05D006977 1.9e-45 188.0 151 63.6
MSTRG.15567 Avicennia marina HOM05D005860 ORTHO05D006977 1.9e-45 188.0 165 60.0
Peaxi162Scf00420g00442 Petunia axillaris HOM05D005860 ORTHO05D006977 1.9e-45 188.0 161 63.4
Actinidia30891 Actinidia chinensis HOM05D005860 ORTHO05D006977 2.5e-45 187.6 164 61.0
Lj7A609T51 Lonicera japonica HOM05D005860 ORTHO05D006977 7.2e-45 186.0 166 61.4
Nitab4.5_0002887g0110 Nicotiana tabacum HOM05D005860 ORTHO05D006977 7.2e-45 186.0 161 62.7
Solyc02g093940.3 Solanum lycopersicum HOM05D005860 ORTHO05D006977 9.4e-45 185.7 161 62.1
Sopen02g038590 Solanum pennellii HOM05D005860 ORTHO05D006977 9.4e-45 185.7 161 62.1
Nitab4.5_0009757g0020 Nicotiana tabacum HOM05D005860 ORTHO05D006977 1.2e-44 185.3 161 62.7
ATR0686G114 Amborella trichopoda HOM05D005860 ORTHO05D006977 1.6e-44 184.9 152 59.9
PGSC0003DMG400020220 Solanum tuberosum HOM05D005860 ORTHO05D006977 2.1e-44 184.5 161 62.1
THA.LOC104825612 Tarenaya hassleriana HOM05D005860 ORTHO05D006977 4.7e-44 183.3 160 63.8
CARHR220830 Cardamine hirsuta HOM05D005860 ORTHO05D006977 8.0e-44 182.6 154 62.3
CAN.G473.79 Capsicum annuum HOM05D005860 ORTHO05D006977 1.4e-43 181.8 161 61.5
Oeu050423.1 Olea europaea HOM05D005860 ORTHO05D006977 1.4e-43 181.8 164 59.8
BcaC09g50132 Brassica carinata HOM05D005860 ORTHO05D006977 1.8e-43 181.4 160 59.4
C01p28690 Brassica napus HOM05D005860 ORTHO05D006977 1.8e-43 181.4 160 59.4
BolC1t02795H Brassica oleracea HOM05D005860 ORTHO05D006977 1.8e-43 181.4 160 59.4
BcaNung00353 Brassica carinata HOM05D005860 ORTHO05D006977 2.3e-43 181.0 159 60.4
Oeu058768.1 Olea europaea HOM05D005860 ORTHO05D006977 2.3e-43 181.0 164 58.5
AT4G14605 Arabidopsis thaliana HOM05D005860 ORTHO05D006977 5.2e-43 179.9 159 61.0
Carub.0007s2760 Capsella rubella HOM05D005860 ORTHO05D006977 5.2e-43 179.9 160 56.9
Thhalv10025001m.g Eutrema salsugineum HOM05D005860 ORTHO05D006977 6.7e-43 179.5 158 60.8
CSS0015596 Camellia sinensis var. sinensis HOM05D005860 ORTHO05D006977 8.8e-43 179.1 164 57.9
CSS0028115 Camellia sinensis var. sinensis HOM05D005860 ORTHO05D006977 8.8e-43 179.1 164 57.9
Medtr2g034600 Medicago truncatula HOM05D005860 ORTHO05D006977 8.8e-43 179.1 154 62.3
BraA01t02219Z Brassica rapa HOM05D005860 ORTHO05D006977 1.1e-42 178.7 157 59.9
A01p23060 Brassica napus HOM05D005860 ORTHO05D006977 1.5e-42 178.3 162 59.3
EL10Ac1g02122 Beta vulgaris HOM05D005860 ORTHO05D006977 2.0e-42 177.9 163 61.3
AL7G41520 Arabidopsis lyrata HOM05D005860 ORTHO05D006977 7.4e-42 176.0 159 59.1
Rhsim08G0044400 Rhododendron simsii HOM05D005860 ORTHO05D006977 9.7e-42 175.6 224 46.0
CANSAT64G0040 Cannabis sativa HOM05D005860 ORTHO05D006977 1.7e-41 174.9 160 60.6
Sp7g12700 Schrenkiella parvula HOM05D005860 ORTHO05D006977 1.7e-41 174.9 159 59.1
TPR.G5727 Trifolium pratense HOM05D001503 ORTHO05D003820 1.7e-41 174.9 156 60.9
PSO478G3943 Papaver somniferum HOM05D005860 ORTHO05D006977 2.8e-41 174.1 151 57.6
PSO017G5933 Papaver somniferum HOM05D005860 ORTHO05D006977 3.7e-41 173.7 151 57.0
Rhsim08G0044700 Rhododendron simsii HOM05D005860 ORTHO05D006977 3.7e-41 173.7 195 50.3
unitig_0.g543 Utricularia gibba HOM05D005860 ORTHO05D006977 3.7e-41 173.7 162 56.2
Lju41A50T54 Lonicera japonica HOM05D005860 ORTHO05D006977 4.8e-41 173.3 165 56.4
Lalb_Chr02g0157831 Lupinus albus HOM05D005860 ORTHO05D006977 8.2e-41 172.6 153 61.4
Rhsim08G0044500 Rhododendron simsii HOM05D005860 ORTHO05D006977 8.2e-41 172.6 200 50.0
SGA_v2.0_scaffold7G03541 Striga asiatica HOM05D005860 ORTHO05D006977 1.1e-40 172.2 163 57.1
Sed0015041 Sechium edule HOM05D005860 ORTHO05D006977 1.8e-40 171.4 154 57.8
AUR62043070 Chenopodium quinoa HOM05D005860 ORTHO05D006977 4.1e-40 170.2 161 61.5
Psat1g161720 Pisum sativum HOM05D005860 ORTHO05D006977 4.1e-40 170.2 156 60.9
Aa31LG9G2730 Aethionema arabicum HOM05D005860 ORTHO05D006977 2.6e-39 167.5 158 57.0
AUR62032474 Chenopodium quinoa HOM05D005860 ORTHO05D006977 4.5e-39 166.8 161 59.6
Hund24045 Selenicereus undatus HOM05D005860 ORTHO05D006977 1.0e-38 165.6 162 58.6
vmacro18326 Vaccinium macrocarpon HOM05D005860 ORTHO05D006977 4.2e-37 160.2 167 55.7
Rhsim08G0045000 Rhododendron simsii HOM05D005860 ORTHO05D006977 5.2e-35 153.3 165 52.7
Zm00001eb246440 Zea mays HOM05D005860 ORTHO05D006977 1.6e-31 141.7 153 49.7
HanXRQChr15g0486891 Helianthus annuus HOM05D005860 ORTHO05D006977 2.7e-31 141.0 167 46.7
ECA232G2764 Erigeron canadensis HOM05D005860 ORTHO05D006977 1.0e-30 139.0 163 49.1
CiPaw.01G128900 Carya illinoinensis HOM05D005860 ORTHO05D006977 2.2e-30 137.9 108 67.6
CDE09G0687 Ceratophyllum demersum HOM05D005860 ORTHO05D006977 1.1e-29 135.6 203 43.8
Haze_00763 Corylus avellana HOM05D005860 ORTHO05D006977 4.2e-29 133.7 172 52.9
Prupe.3G302700 Prunus persica HOM05D005860 ORTHO05D006977 1.2e-28 132.1 108 62.0
Migut.C00523 Erythranthe guttata HOM05D005860 ORTHO05D006977 5.4e-24 116.7 78 74.4
Rhsim08G0044900 Rhododendron simsii HOM05D005860 ORTHO05D006977 5.4e-24 116.7 157 43.9
Lsat_1_v5_gn_4_185440 Lactuca sativa HOM05D005860 ORTHO05D006977 1.7e-17 95.1 117 48.7
Haze_00761 Corylus avellana HOM05D030039 ORTHO05D028600 3.7e-17 94.0 54 94.4
Haze_00762 Corylus avellana HOM05D030039 ORTHO05D028600 4.9e-17 93.6 98 74.5
ATR0686G162 Amborella trichopoda HOM05D005860 ORTHO05D006977 1.2e-15 89.0 143 39.2
HPP92_024250 Vanilla planifolia HOM05D005860 ORTHO05D006977 5.9e-15 86.7 111 44.1
HPP92_024230 Vanilla planifolia HOM05D005860 ORTHO05D006977 7.8e-15 86.3 111 43.2
Mapoly0029s0044 Marchantia polymorpha HOM05D005860 ORTHO05D006977 1.0e-14 85.9 156 35.3
AagrBONN_evm.TU.Sc2ySwM_117.926 Anthoceros agrestis HOM05D000273 ORTHO05D006977 2.3e-14 84.7 145 36.6
Pp3c15_12290 Physcomitrium patens HOM05D005860 ORTHO05D006977 1.1e-13 82.4 143 33.6
vmacro18330 Vaccinium macrocarpon HOM05D005860 ORTHO05D006977 1.2e-10 72.4 64 59.4
Rhsim08G0044800 Rhododendron simsii HOM05D005860 ORTHO05D006977 1.7e-09 68.6 40 80.0
TAR374G0650 Trochodendron aralioides HOM05D005860 ORTHO05D006977 2.9e-09 67.8 141 36.2
HPP92_024251 Vanilla planifolia HOM05D005860 ORTHO05D006977 3.7e-09 67.4 44 65.9
vmacro18328 Vaccinium macrocarpon HOM05D005860 ORTHO05D006977 1.4e-08 65.5 42 71.4
Pp3c9_18330 Physcomitrium patens HOM05D005860 ORTHO05D006977 4.1e-08 63.9 143 30.1
CiPaw.01G128800 Carya illinoinensis HOM05D030039 ORTHO05D028600 7.8e-07 59.7 88 47.7
FAN14G0528 Fragaria x ananassa HOM05D005860 ORTHO05D006977 5.0e-06 57.0 55 52.7
Sed0001458 Sechium edule HOM05D005860 ORTHO05D006977 6.6e-06 56.6 44 70.5
BcaC05g27015 Brassica carinata HOM05D005860 ORTHO05D006977 8.6e-06 56.2 35 74.3


User provided reference genes

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