Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015727 Carpinus fangiana HOM05D004696 ORTHO05D005645 5.6e-107 391.0 198 100.0
Haze_00771 Corylus avellana HOM05D004696 ORTHO05D005645 1.7e-103 379.4 198 96.0
CiPaw.02G069300 Carya illinoinensis HOM05D004696 ORTHO05D005645 1.9e-91 339.3 198 87.4
QL06p014174 Quercus lobata HOM05D004696 ORTHO05D005645 1.6e-85 319.7 207 78.7
CSS0007787 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 2.9e-79 298.9 201 75.6
Dinv29511 Davidia involucrata HOM05D004696 ORTHO05D005645 3.8e-79 298.5 198 76.8
Manes.11G020900 Manihot esculenta HOM05D004696 ORTHO05D005645 6.4e-79 297.7 198 74.7
Actinidia22921 Actinidia chinensis HOM05D004696 ORTHO05D005645 3.2e-78 295.4 197 77.2
CsaV3_6G008150 Cucumis sativus L. HOM05D004696 ORTHO05D005645 3.2e-78 295.4 198 75.8
Dinv18020 Davidia involucrata HOM05D004696 ORTHO05D005645 1.6e-77 293.1 198 76.3
Lsat_1_v5_gn_1_39920 Lactuca sativa HOM05D004696 ORTHO05D005645 1.6e-77 293.1 198 74.2
Manes.03G211700 Manihot esculenta HOM05D004696 ORTHO05D005645 2.1e-77 292.7 198 73.7
TAR629G2307 Trochodendron aralioides HOM05D004696 ORTHO05D005645 4.6e-77 291.6 198 76.3
Ciclev10005920m.g Citrus clementina HOM05D004696 ORTHO05D005645 3.9e-76 288.5 201 72.1
Cpa.g.sc146.25 Carica papaya HOM05D004696 ORTHO05D005645 8.7e-76 287.3 200 74.0
Solyc05g053220.3 Solanum lycopersicum HOM05D004696 ORTHO05D005645 1.1e-75 287.0 198 72.2
Sopen05g031730 Solanum pennellii HOM05D004696 ORTHO05D005645 1.1e-75 287.0 198 72.2
TWI73G0566 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 1.9e-75 286.2 198 73.7
HanXRQChr09g0238571 Helianthus annuus HOM05D004696 ORTHO05D005645 4.3e-75 285.0 198 71.7
PGSC0003DMG400027150 Solanum tuberosum HOM05D004696 ORTHO05D005645 4.3e-75 285.0 198 71.2
CAN.G305.38 Capsicum annuum HOM05D004696 ORTHO05D005645 5.6e-75 284.6 198 71.2
Thecc.04G312600 Theobroma cacao HOM05D004696 ORTHO05D005645 5.6e-75 284.6 200 71.5
Sed0019137 Sechium edule HOM05D004696 ORTHO05D005645 9.6e-75 283.9 196 74.0
GSVIVG01017685001 Vitis vinifera HOM05D004696 ORTHO05D005645 6.2e-74 281.2 200 74.5
Lalb_Chr10g0096421 Lupinus albus HOM05D004696 ORTHO05D005645 3.1e-73 278.9 197 71.1
Atru.chr4.3144 Acer truncatum HOM05D004696 ORTHO05D005645 4.0e-73 278.5 195 72.3
Lalb_Chr17g0338851 Lupinus albus HOM05D004696 ORTHO05D005645 9.0e-73 277.3 197 69.5
vmacro08011 Vaccinium macrocarpon HOM05D004696 ORTHO05D005645 2.0e-72 276.2 210 69.0
VMungo0331G1167 Vigna mungo HOM05D004696 ORTHO05D005645 3.4e-72 275.4 198 70.2
Lsat_1_v5_gn_6_92581 Lactuca sativa HOM05D004696 ORTHO05D005645 5.8e-72 274.6 198 70.2
Eucgr.B03956 Eucalyptus grandis HOM05D004696 ORTHO05D005645 9.9e-72 273.9 199 70.9
Sabra02G0114900 Salix brachista HOM05D004696 ORTHO05D005645 9.9e-72 273.9 194 73.7
TWI09G0971 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 9.9e-72 273.9 198 70.2
Glyma.01G218300 Glycine max HOM05D004696 ORTHO05D005645 2.2e-71 272.7 197 70.6
Lj2g0021207 Lotus japonicus HOM05D004696 ORTHO05D005645 2.9e-71 272.3 198 68.2
Potri.008G206400 Populus trichocarpa HOM05D004696 ORTHO05D005645 2.9e-71 272.3 194 73.2
Glyma.11G024900 Glycine max HOM05D004696 ORTHO05D005645 4.9e-71 271.6 197 71.6
Phvul.003G045400 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 6.4e-71 271.2 197 70.1
PGR031G3538 Punica granatum HOM05D004696 ORTHO05D005645 1.1e-70 270.4 200 70.0
Sc17g0002920 Simmondsia chinensis HOM05D004696 ORTHO05D005645 2.4e-70 269.2 200 67.5
Potri.010G002100 Populus trichocarpa HOM05D004696 ORTHO05D005645 3.2e-70 268.9 193 72.0
Duzib151G0078 Durio zibethinus HOM05D004696 ORTHO05D005645 4.2e-70 268.5 200 69.0
Gorai.005G071900 Gossypium raimondii HOM05D004696 ORTHO05D005645 4.2e-70 268.5 204 66.2
RcHm_v2.0_Chr4g0427441 Rosa chinensis HOM05D004696 ORTHO05D005645 4.2e-70 268.5 200 71.0
Gohir.A02G058200 Gossypium hirsutum HOM05D004696 ORTHO05D005645 5.5e-70 268.1 204 66.7
Lj4g0004970 Lotus japonicus HOM05D004696 ORTHO05D005645 7.1e-70 267.7 198 67.7
FvH4_4g21490 Fragaria vesca HOM05D004696 ORTHO05D005645 1.2e-69 266.9 198 70.7
Phvul.010G140500 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 1.6e-69 266.5 198 67.7
FAN12G0616 Fragaria x ananassa HOM05D004696 ORTHO05D005645 2.1e-69 266.2 198 70.7
Psat7g133720 Pisum sativum HOM05D004696 ORTHO05D005645 2.1e-69 266.2 198 66.7
CANSAT78G0332 Cannabis sativa HOM05D004696 ORTHO05D005645 2.7e-69 265.8 200 67.5
Psat1g042400 Pisum sativum HOM05D004696 ORTHO05D005645 4.6e-69 265.0 198 65.7
Glyma.14G125600 Glycine max HOM05D004696 ORTHO05D005645 7.9e-69 264.2 191 70.2
FAN07G1680 Fragaria x ananassa HOM05D004696 ORTHO05D005645 1.3e-68 263.5 198 69.7
Gohir.D02G064000 Gossypium hirsutum HOM05D004696 ORTHO05D005645 1.3e-68 263.5 204 65.2
Aqoxy4G02417 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 1.8e-68 263.1 196 67.3
Prupe.1G105700 Prunus persica HOM05D004696 ORTHO05D005645 3.0e-68 262.3 199 67.8
Sabra08G0150400 Salix brachista HOM05D004696 ORTHO05D005645 3.0e-68 262.3 214 66.8
EL10Ac4g08571 Beta vulgaris HOM05D004696 ORTHO05D005645 1.5e-67 260.0 192 69.3
ECA220G0002 Erigeron canadensis HOM05D004696 ORTHO05D005645 1.5e-67 260.0 184 70.7
Migut.N00002 Erythranthe guttata HOM05D004696 ORTHO05D005645 1.5e-67 260.0 199 69.3
Sabra02G0116500 Salix brachista HOM05D004696 ORTHO05D005645 1.9e-67 259.6 214 66.8
MD13G1140700 Malus domestica HOM05D004696 ORTHO05D005645 2.5e-67 259.2 198 65.7
Aqoxy5G04183 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 9.6e-67 257.3 196 65.8
Ah.06g192450 Amaranthus hybridus HOM05D004696 ORTHO05D005645 1.3e-66 256.9 198 64.1
arahy.Tifrunner.gnm1.ann1.61U0KE Arachis hypogaea HOM05D004696 ORTHO05D005645 1.6e-66 256.5 207 65.2
THA.LOC104827108 Tarenaya hassleriana HOM05D004696 ORTHO05D005645 2.1e-66 256.1 192 65.1
MSTRG.24614 Avicennia marina HOM05D004696 ORTHO05D005645 4.8e-66 255.0 188 68.6
MD07G1065600 Malus domestica HOM05D004696 ORTHO05D005645 4.8e-66 255.0 198 65.2
Ah.16g105210 Amaranthus hybridus HOM05D004696 ORTHO05D005645 1.4e-65 253.4 198 63.6
Medtr5g081850 Medicago truncatula HOM05D004696 ORTHO05D005645 1.4e-65 253.4 198 63.1
arahy.Tifrunner.gnm1.ann1.NQRV37 Arachis hypogaea HOM05D004696 ORTHO05D005645 2.4e-65 252.7 207 64.7
arahy.Tifrunner.gnm1.ann1.BY2PXQ Arachis hypogaea HOM05D004696 ORTHO05D005645 5.3e-65 251.5 207 64.3
MD16G1136700 Malus domestica HOM05D004696 ORTHO05D005645 5.3e-65 251.5 198 65.7
AUR62020507 Chenopodium quinoa HOM05D004696 ORTHO05D005645 9.0e-65 250.8 189 66.1
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 3.4e-64 248.8 195 65.6
TPR.G8061 Trifolium pratense HOM05D004696 ORTHO05D005645 4.5e-64 248.4 199 61.8
MBI03_g01483_MAGBIO Magnolia biondii HOM05D004696 ORTHO05D005645 1.0e-63 247.3 184 67.9
SGA_v2.0_scaffold49G18399 Striga asiatica HOM05D004696 ORTHO05D005645 1.0e-63 247.3 195 65.6
AL6G41010 Arabidopsis lyrata HOM05D004696 ORTHO05D005645 2.5e-62 242.7 199 63.3
SalBow2G0725 Salvia bowleyana HOM05D001196 ORTHO05D005911 9.3e-62 240.7 203 64.5
AT5G30495 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 2.1e-61 239.6 199 62.3
Cc00_g15640 Coffea canephora HOM05D004696 ORTHO05D005645 6.0e-61 238.0 226 58.8
Carub.0002s0865 Capsella rubella HOM05D004696 ORTHO05D005645 1.3e-60 236.9 190 62.6
Cc03_g00150 Coffea canephora HOM05D004696 ORTHO05D005645 1.3e-60 236.9 211 61.1
Oeu022705.1 Olea europaea HOM05D004696 ORTHO05D005645 3.0e-60 235.7 177 67.2
unitig_8.g2889 Utricularia gibba HOM05D004696 ORTHO05D005645 3.0e-60 235.7 186 65.6
Os02g0730500 Oryza sativa ssp. japonica HOM05D004696 ORTHO05D005645 2.5e-59 232.6 196 60.7
Lj6C700T16 Lonicera japonica HOM05D004696 ORTHO05D005645 3.3e-59 232.3 198 62.6
Nitab4.5_0008086g0030 Nicotiana tabacum HOM05D004696 ORTHO05D005645 3.3e-59 232.3 198 62.1
BcaC04g23715 Brassica carinata HOM05D004696 ORTHO05D005645 1.6e-58 229.9 198 62.1
ClCG06G002080 Citrullus lanatus HOM05D004696 ORTHO05D005645 3.7e-58 228.8 198 62.6
CARHR185500 Cardamine hirsuta HOM05D004696 ORTHO05D005645 8.2e-58 227.6 198 58.1
BcaB04g19639 Brassica carinata HOM05D004696 ORTHO05D005645 1.4e-57 226.9 190 60.5
Hma1.2p1_2234F.1_g317690 Hydrangea macrophylla HOM05D004696 ORTHO05D000003 1.8e-57 226.5 261 51.7
Aqoxy3G02973 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 5.3e-57 224.9 160 70.0
Oeu037627.2 Olea europaea HOM05D004696 ORTHO05D005645 6.9e-57 224.6 299 45.8
PSO782G4648 Papaver somniferum HOM05D004696 ORTHO05D005645 6.9e-57 224.6 190 62.6
Sp2g19960 Schrenkiella parvula HOM05D004696 ORTHO05D005645 6.9e-57 224.6 199 59.3
Peaxi162Scf00164g00414 Petunia axillaris HOM05D004696 ORTHO05D005645 9.0e-57 224.2 198 61.1
PSO478G3068 Papaver somniferum HOM05D004696 ORTHO05D005645 1.2e-56 223.8 190 62.6
Zm00001eb189970 Zea mays HOM05D004696 ORTHO05D005645 2.0e-56 223.0 198 60.1
Aa31LG2G12130 Aethionema arabicum HOM05D004696 ORTHO05D005645 1.3e-55 220.3 196 58.7
Rhsim04G0248200 Rhododendron simsii HOM05D004696 ORTHO05D005645 1.3e-55 220.3 201 63.2
BolC9t53474H Brassica oleracea HOM05D004696 ORTHO05D005645 1.7e-55 219.9 198 60.6
BraA09t36143Z Brassica rapa HOM05D004696 ORTHO05D005645 2.2e-55 219.5 198 60.1
PSO063G5897 Papaver somniferum HOM05D004696 ORTHO05D005645 2.2e-55 219.5 197 60.9
PSO832G1751 Papaver somniferum HOM05D004696 ORTHO05D005645 2.2e-55 219.5 200 60.5
Thhalv10005420m.g Eutrema salsugineum HOM05D004696 ORTHO05D005645 2.9e-55 219.2 200 58.0
C09p05450 Brassica napus HOM05D004696 ORTHO05D005645 5.0e-55 218.4 198 60.1
A09p05040 Brassica napus HOM05D004696 ORTHO05D005645 6.5e-55 218.0 198 59.6
AT1G54770 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 8.4e-55 217.6 200 61.0
AUR62015697 Chenopodium quinoa HOM05D004696 ORTHO05D005645 5.5e-54 214.9 152 69.1
Ca_05928_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 6.7e-52 208.0 198 56.1
Actinidia01063 Actinidia chinensis HOM05D004696 ORTHO05D005645 1.9e-51 206.5 196 59.2
Ca_06214_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 1.9e-51 206.5 199 55.3
SGA_v2.0_scaffold69G23291 Striga asiatica HOM05D004696 ORTHO05D005645 9.7e-51 204.1 195 56.9
arahy.Tifrunner.gnm1.ann1.09FGJA Arachis hypogaea HOM05D004696 ORTHO05D005645 4.8e-50 201.8 198 57.1
Nitab4.5_0000745g0120 Nicotiana tabacum HOM05D004696 ORTHO05D005645 1.2e-48 197.2 198 56.1
SHI04008 Sapria himalayana HOM05D004696 ORTHO05D005645 5.9e-48 194.9 161 62.1
ECA248G3148 Erigeron canadensis HOM05D004696 ORTHO05D005645 1.7e-47 193.4 184 57.6
MELO3C035238.2 Cucumis melo HOM05D004696 ORTHO05D005645 4.2e-46 188.7 166 59.6
Nn3g16891 Nelumbo nucifera HOM05D004696 ORTHO05D005645 2.3e-44 183.0 127 68.5
SEGI_16783 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 5.7e-43 178.3 173 56.1
Mapoly0084s0020 Marchantia polymorpha HOM05D004696 ORTHO05D005645 8.2e-42 174.5 177 51.4
SEGI_41631 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 1.4e-41 173.7 190 51.6
ECA149G0001 Erigeron canadensis HOM05D004696 ORTHO05D005645 5.9e-40 168.3 193 53.9
Pp3c7_450 Physcomitrium patens HOM05D004696 ORTHO05D005645 1.1e-38 164.1 181 51.4
SMO139G0013 Selaginella moellendorffii HOM05D004696 ORTHO05D005645 7.2e-38 161.4 154 52.6
Lj4g0014561 Lotus japonicus HOM05D004696 ORTHO05D005645 2.4e-33 146.4 100 73.0
Lj4g0016234 Lotus japonicus HOM05D004696 ORTHO05D005645 3.5e-32 142.5 96 74.0
RcHm_v2.0_Chr4g0427481 Rosa chinensis HOM05D004696 ORTHO05D005645 3.2e-30 136.0 102 62.7
CBR_g41139 Chara braunii HOM05D004696 ORTHO05D005645 7.2e-30 134.8 147 43.5
ATR1127G170 Amborella trichopoda HOM05D004696 ORTHO05D005645 9.4e-30 134.4 127 54.3
CSS0046364 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 1.8e-28 130.2 102 60.8
HPP92_006011 Vanilla planifolia HOM05D004696 ORTHO05D005645 2.0e-27 126.7 123 52.0
Lj2g0010517 Lotus japonicus HOM05D004696 ORTHO05D005645 1.7e-26 123.6 143 49.7
CSS0022818 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 2.8e-26 122.9 101 58.4
Zm00001eb253530 Zea mays HOM05D004696 ORTHO05D005645 3.7e-26 122.5 99 66.7
MCO05G434 Micromonas commoda HOM05D004696 ORTHO05D005645 7.7e-24 114.8 154 42.9
TAR371G0358 Trochodendron aralioides HOM05D004696 ORTHO05D005645 7.7e-24 114.8 104 65.4
AagrBONN_evm.TU.Sc2ySwM_368.1627 Anthoceros agrestis HOM05D004696 ORTHO05D005645 2.9e-23 112.8 126 45.2
COL.COLO4_34519 Corchorus olitorius HOM05D004696 ORTHO05D005645 8.0e-21 104.8 117 51.3
Lj2g0009432 Lotus japonicus HOM05D004696 ORTHO05D005645 8.0e-21 104.8 92 60.9
BcaC04g19932 Brassica carinata HOM05D004696 ORTHO05D005645 1.0e-20 104.4 117 47.9
BolC9t57816H Brassica oleracea HOM05D004696 ORTHO05D005645 1.0e-20 104.4 117 48.7
PRCOL_00000839 Prasinoderma coloniale HOM05D004696 ORTHO05D005645 1.7e-18 97.1 185 36.2
Cfa024688 Carpinus fangiana HOM05D004696 ORTHO05D005645 1.2e-16 90.9 113 40.7
Zm00001eb026470 Zea mays HOM05D004696 ORTHO05D021106 5.9e-16 88.6 65 67.7
BcaB05g22696 Brassica carinata HOM05D004696 ORTHO05D005645 3.8e-15 85.9 123 42.3
Aqoxy5G04095 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 1.1e-14 84.3 70 67.1
Zm00001eb219180 Zea mays HOM05D004696 ORTHO05D005645 9.4e-14 81.3 65 64.6
Cre03.g194150 Chlamydomonas reinhardtii HOM05D004696 ORTHO05D005645 3.6e-13 79.3 180 35.0
QL04p080373 Quercus lobata HOM05D000023 ORTHO05D000014 2.3e-12 76.6 45 77.8
QL12p004065 Quercus lobata HOM05D004696 ORTHO05D005645 3.0e-12 76.3 66 65.2
CSS0030909 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 6.8e-12 75.1 102 42.2
EL10Ac1g01076 Beta vulgaris HOM05D004696 ORTHO05D005645 7.5e-11 71.6 57 64.9
Medtr7g074130 Medicago truncatula HOM05D004696 ORTHO05D005645 1.9e-06 57.0 61 50.8


User provided reference genes

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