Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015704 Carpinus fangiana HOM05D006364 ORTHO05D007968 2.3e-20 101.3 52 100.0
Haze_00814 Corylus avellana HOM05D006364 ORTHO05D007968 2.0e-16 88.2 66 74.2
MELO3C006742.2 Cucumis melo HOM05D006364 ORTHO05D007968 5.0e-15 83.6 66 69.7
Prupe.1G110000 Prunus persica HOM05D006364 ORTHO05D007968 5.0e-15 83.6 66 69.7
CsaV3_3G015430 Cucumis sativus L. HOM05D006364 ORTHO05D007968 1.1e-14 82.4 66 68.2
CDE11G0289 Ceratophyllum demersum HOM05D006364 ORTHO05D007968 2.5e-14 81.3 66 66.7
QL06p013601 Quercus lobata HOM05D006364 ORTHO05D007968 2.5e-14 81.3 66 68.2
SalBow4G1453 Salvia bowleyana HOM05D006364 ORTHO05D007968 2.5e-14 81.3 51 76.5
Sc07g0002970 Simmondsia chinensis HOM05D006364 ORTHO05D007968 2.5e-14 81.3 67 68.7
Nn3g21850 Nelumbo nucifera HOM05D006364 ORTHO05D007968 3.2e-14 80.9 66 68.2
GSVIVG01017645001 Vitis vinifera HOM05D006364 ORTHO05D007968 3.2e-14 80.9 66 68.2
Duzib212G0576 Durio zibethinus HOM05D006364 ORTHO05D007968 5.5e-14 80.1 66 68.2
Gohir.A02G086100 Gossypium hirsutum HOM05D006364 ORTHO05D007968 5.5e-14 80.1 66 68.2
Gohir.D02G062300 Gossypium hirsutum HOM05D006364 ORTHO05D007968 5.5e-14 80.1 66 68.2
Gorai.005G070100 Gossypium raimondii HOM05D006364 ORTHO05D007968 5.5e-14 80.1 66 68.2
RcHm_v2.0_Chr4g0426541 Rosa chinensis HOM05D006364 ORTHO05D007968 5.5e-14 80.1 66 66.7
Thecc.04G308800 Theobroma cacao HOM05D006364 ORTHO05D007968 5.5e-14 80.1 66 68.2
Lalb_Chr18g0058441 Lupinus albus HOM05D006364 ORTHO05D007968 7.2e-14 79.7 66 68.2
Ah.05g176740 Amaranthus hybridus HOM05D006364 ORTHO05D007968 1.2e-13 79.0 67 68.7
arahy.Tifrunner.gnm1.ann1.28BCJ9 Arachis hypogaea HOM05D006364 ORTHO05D007968 1.2e-13 79.0 65 67.7
arahy.Tifrunner.gnm1.ann1.8W9CKH Arachis hypogaea HOM05D006364 ORTHO05D007968 1.2e-13 79.0 65 67.7
arahy.Tifrunner.gnm1.ann1.ZVI86Q Arachis hypogaea HOM05D006364 ORTHO05D007968 1.2e-13 79.0 65 67.7
Duzib151G1172 Durio zibethinus HOM05D006364 ORTHO05D007968 1.2e-13 79.0 66 66.7
Dinv15615 Davidia involucrata HOM05D006364 ORTHO05D007968 1.6e-13 78.6 66 66.7
Dinv29542 Davidia involucrata HOM05D006364 ORTHO05D007968 1.6e-13 78.6 67 67.2
Glyma.15G136600 Glycine max HOM05D006364 ORTHO05D007968 1.6e-13 78.6 65 67.7
Potri.008G100400 Populus trichocarpa HOM05D006364 ORTHO05D007968 1.6e-13 78.6 66 66.7
Potri.010G152100 Populus trichocarpa HOM05D006364 ORTHO05D007968 1.6e-13 78.6 66 66.7
Cpa.g.sc146.52 Carica papaya HOM05D006364 ORTHO05D007968 2.1e-13 78.2 66 65.2
FvH4_4g21000 Fragaria vesca HOM05D006364 ORTHO05D007968 2.1e-13 78.2 66 65.2
FAN12G1354 Fragaria x ananassa HOM05D000037 ORTHO05D001684 2.1e-13 78.2 66 65.2
Glyma.09G031500 Glycine max HOM05D006364 ORTHO05D007968 2.7e-13 77.8 66 65.2
HanXRQChr09g0252081 Helianthus annuus HOM05D006364 ORTHO05D007968 2.7e-13 77.8 66 65.2
Medtr2g032700 Medicago truncatula HOM05D006364 ORTHO05D007968 2.7e-13 77.8 66 63.6
Sed0012877 Sechium edule HOM05D006364 ORTHO05D007968 2.7e-13 77.8 66 65.2
CAN.G175.13 Capsicum annuum HOM05D006364 ORTHO05D007968 3.6e-13 77.4 66 65.2
CiPaw.01G113600 Carya illinoinensis HOM05D006364 ORTHO05D007968 3.6e-13 77.4 66 65.2
AL3G30350 Arabidopsis lyrata HOM05D006364 ORTHO05D007968 4.7e-13 77.0 66 65.2
AT3G17300 Arabidopsis thaliana HOM05D006364 ORTHO05D007968 4.7e-13 77.0 66 65.2
EL10Ac1g00595 Beta vulgaris HOM05D006364 ORTHO05D007968 4.7e-13 77.0 66 66.7
CSS0027206 Camellia sinensis var. sinensis HOM05D006364 ORTHO05D007968 4.7e-13 77.0 66 65.2
Carub.0003s1701 Capsella rubella HOM05D006364 ORTHO05D007968 4.7e-13 77.0 66 65.2
Cc03_g00390 Coffea canephora HOM05D006364 ORTHO05D007968 4.7e-13 77.0 66 65.2
COL.COLO4_34533 Corchorus olitorius HOM05D006364 ORTHO05D007968 4.7e-13 77.0 66 66.7
Rhsim02G0000900 Rhododendron simsii HOM05D006364 ORTHO05D007968 4.7e-13 77.0 66 63.6
Sed0013937 Sechium edule HOM05D006364 ORTHO05D007968 6.1e-13 76.6 66 63.6
Solyc04g071180.3 Solanum lycopersicum HOM05D006364 ORTHO05D007968 6.1e-13 76.6 66 65.2
Sopen04g027130 Solanum pennellii HOM05D006364 ORTHO05D007968 6.1e-13 76.6 66 65.2
THA.LOC104820323 Tarenaya hassleriana HOM05D006364 ORTHO05D007968 6.1e-13 76.6 66 63.6
TWI73G0896 Tripterygium wilfordii HOM05D006364 ORTHO05D007968 6.1e-13 76.6 66 65.2
Peaxi162Scf00126g01328 Petunia axillaris HOM05D006364 ORTHO05D007968 8.0e-13 76.3 66 63.6
CANSAT78G0762 Cannabis sativa HOM05D006364 ORTHO05D007968 1.0e-12 75.9 66 65.2
Lsat_1_v5_gn_6_117381 Lactuca sativa HOM05D006364 ORTHO05D007968 1.0e-12 75.9 66 63.6
Lalb_Chr20g0120331 Lupinus albus HOM05D006364 ORTHO05D007968 1.0e-12 75.9 66 65.2
AUR62034532 Chenopodium quinoa HOM05D000862 ORTHO05D000943 1.4e-12 75.5 66 63.6
Nitab4.5_0000152g0370 Nicotiana tabacum HOM05D006364 ORTHO05D007968 1.4e-12 75.5 66 63.6
Nitab4.5_0003130g0060 Nicotiana tabacum HOM05D006364 ORTHO05D007968 1.4e-12 75.5 66 63.6
Psat1g163400 Pisum sativum HOM05D006364 ORTHO05D007968 1.4e-12 75.5 66 63.6
Actinidia02518 Actinidia chinensis HOM05D006364 ORTHO05D007968 1.8e-12 75.1 66 63.6
CAN.G689.14 Capsicum annuum HOM05D006364 ORTHO05D007968 1.8e-12 75.1 66 63.6
Lj6g0013185 Lotus japonicus HOM05D006364 ORTHO05D007968 1.8e-12 75.1 66 63.6
Hund19242 Selenicereus undatus HOM05D006364 ORTHO05D007968 1.8e-12 75.1 66 62.1
Eucgr.H04093 Eucalyptus grandis HOM05D006364 ORTHO05D007968 2.3e-12 74.7 66 62.1
Hma1.2p1_0013F.1_g008050 Hydrangea macrophylla HOM05D006364 ORTHO05D007968 3.0e-12 74.3 66 63.6
Phvul.006G121400 Phaseolus vulgaris HOM05D006364 ORTHO05D007968 3.0e-12 74.3 66 63.6
PGSC0003DMG400008613 Solanum tuberosum HOM05D006364 ORTHO05D007968 3.0e-12 74.3 66 63.6
TPR.G30811 Trifolium pratense HOM05D006364 ORTHO05D007968 3.0e-12 74.3 66 62.1
CSS0032087 Camellia sinensis var. sinensis HOM05D006364 ORTHO05D007968 4.0e-12 73.9 66 63.6
AUR62014465 Chenopodium quinoa HOM05D000862 ORTHO05D000943 4.0e-12 73.9 66 62.1
Aqoxy2G02602 Aquilegia oxysepala HOM05D006364 ORTHO05D007968 5.2e-12 73.6 66 63.6
CARHR092600 Cardamine hirsuta HOM05D006364 ORTHO05D007968 5.2e-12 73.6 66 62.1
HPP92_017027 Vanilla planifolia HOM05D006364 ORTHO05D007968 5.2e-12 73.6 66 60.6
Zm00001eb028690 Zea mays HOM05D006364 ORTHO05D007968 5.2e-12 73.6 66 62.1
Actinidia31587 Actinidia chinensis HOM05D006364 ORTHO05D007968 6.8e-12 73.2 66 63.6
MSTRG.26303 Avicennia marina HOM05D006364 ORTHO05D007968 6.8e-12 73.2 66 62.1
BcaB04g18937 Brassica carinata HOM05D006364 ORTHO05D007968 6.8e-12 73.2 66 62.1
BcaB04g20848 Brassica carinata HOM05D006364 ORTHO05D007968 6.8e-12 73.2 66 62.1
BcaC09g48691 Brassica carinata HOM05D006364 ORTHO05D007968 6.8e-12 73.2 66 62.1
A01p37010 Brassica napus HOM05D006364 ORTHO05D007968 6.8e-12 73.2 66 62.1
A03p40140 Brassica napus HOM05D006364 ORTHO05D007968 6.8e-12 73.2 66 62.1
C01p46890 Brassica napus HOM05D006364 ORTHO05D007968 6.8e-12 73.2 66 62.1
BolC1t04661H Brassica oleracea HOM05D006364 ORTHO05D007968 6.8e-12 73.2 66 62.1
BraA01t03762Z Brassica rapa HOM05D006364 ORTHO05D007968 6.8e-12 73.2 66 62.1
BraA03t13164Z Brassica rapa HOM05D006364 ORTHO05D007968 6.8e-12 73.2 66 62.1
Thhalv10021841m.g Eutrema salsugineum HOM05D006364 ORTHO05D007968 6.8e-12 73.2 66 62.1
MD16G1140400 Malus domestica HOM05D006364 ORTHO05D007968 6.8e-12 73.2 65 63.1
Sp3g15490 Schrenkiella parvula HOM05D006364 ORTHO05D007968 6.8e-12 73.2 66 62.1
PGR004G1259 Punica granatum HOM05D006364 ORTHO05D007968 1.5e-11 72.0 66 59.1
BcaC01g03770 Brassica carinata HOM05D006364 ORTHO05D007968 2.0e-11 71.6 66 60.6
Aa31LG8G4220 Aethionema arabicum HOM05D006364 ORTHO05D007968 2.6e-11 71.2 66 57.6
BcaC01g03776 Brassica carinata HOM05D006364 ORTHO05D007968 2.6e-11 71.2 66 60.6
C03p48710 Brassica napus HOM05D006364 ORTHO05D007968 2.6e-11 71.2 66 60.6
C03p48760 Brassica napus HOM05D006364 ORTHO05D007968 2.6e-11 71.2 66 60.6
BolC3t17152H Brassica oleracea HOM05D006364 ORTHO05D007968 2.6e-11 71.2 66 60.6
Os12g0566100 Oryza sativa ssp. japonica HOM05D006364 ORTHO05D007968 2.6e-11 71.2 66 59.1
Zm00001eb418900 Zea mays HOM05D006364 ORTHO05D007968 2.6e-11 71.2 66 60.6
DCAR_026961 Daucus carota HOM05D006364 ORTHO05D007968 4.4e-11 70.5 65 58.5
TWI09G0430 Tripterygium wilfordii HOM05D006364 ORTHO05D007968 4.4e-11 70.5 65 63.1
ECA246G0645 Erigeron canadensis HOM05D006364 ORTHO05D007968 9.8e-11 69.3 66 59.1
Migut.B01021 Erythranthe guttata HOM05D006364 ORTHO05D007968 9.8e-11 69.3 66 59.1
Migut.N00017 Erythranthe guttata HOM05D006364 ORTHO05D007968 9.8e-11 69.3 66 59.1
Lj7E712T1 Lonicera japonica HOM05D006364 ORTHO05D007968 1.3e-10 68.9 61 62.3
PSO210G6302 Papaver somniferum HOM05D006364 ORTHO05D007968 1.7e-10 68.6 65 58.5
PSO761G0417 Papaver somniferum HOM05D006364 ORTHO05D007968 1.7e-10 68.6 65 58.5
MBI18_g09661_MAGBIO Magnolia biondii HOM05D006364 ORTHO05D007968 2.8e-10 67.8 96 45.8
SHI21779 Sapria himalayana HOM05D006364 ORTHO05D007968 2.8e-10 67.8 66 60.6
unitig_22.g5765 Utricularia gibba HOM05D006364 ORTHO05D007968 4.8e-10 67.0 66 57.6
Hund17201 Selenicereus undatus HOM05D000862 ORTHO05D000943 1.4e-09 65.5 89 48.3
Zm00001eb193610 Zea mays HOM05D006364 ORTHO05D007968 4.1e-09 63.9 60 60.0
Zm00001eb137950 Zea mays HOM05D006364 ORTHO05D007968 7.0e-09 63.2 97 43.3
AUR62036805 Chenopodium quinoa HOM05D000862 ORTHO05D000943 2.0e-08 61.6 102 41.2
Manes.03G210000 Manihot esculenta HOM05D006364 ORTHO05D007968 3.5e-08 60.8 53 66.0
ClCG05G006780 Citrullus lanatus HOM05D006364 ORTHO05D007968 4.5e-08 60.5 118 38.1
Rhsim04G0245400 Rhododendron simsii HOM05D006364 ORTHO05D007968 5.9e-08 60.1 109 38.5
Zm00001eb224320 Zea mays HOM05D006364 ORTHO05D007968 2.2e-07 58.2 34 82.4
vmacro07987 Vaccinium macrocarpon HOM05D006364 ORTHO05D007968 5.0e-07 57.0 36 75.0
EL10Ac3g06351 Beta vulgaris HOM05D006364 ORTHO05D007968 1.5e-06 55.5 35 74.3


User provided reference genes

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