Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015673 Carpinus fangiana HOM05D003922 ORTHO05D004492 9.7e-80 300.1 149 100.0
CiPaw.01G168800 Carya illinoinensis HOM05D003922 ORTHO05D004492 3.7e-71 271.6 149 87.9
QL10p056544 Quercus lobata HOM05D003922 ORTHO05D004492 3.6e-66 255.0 148 83.8
ClCG11G013550 Citrullus lanatus HOM05D003922 ORTHO05D004492 2.1e-58 229.2 149 73.2
CsaV3_5G030170 Cucumis sativus L. HOM05D003922 ORTHO05D004492 6.1e-58 227.6 149 72.5
MELO3C011855.2 Cucumis melo HOM05D003922 ORTHO05D004492 3.0e-57 225.3 149 71.8
Rhsim09G0008700 Rhododendron simsii HOM05D003922 ORTHO05D004492 1.2e-56 223.4 150 72.7
CiPaw.02G099200 Carya illinoinensis HOM05D003922 ORTHO05D004492 2.0e-56 222.6 142 75.4
PGR142G3702 Punica granatum HOM05D003922 ORTHO05D004492 2.6e-56 222.2 150 73.3
Sed0023559 Sechium edule HOM05D003922 ORTHO05D004492 3.4e-56 221.9 149 70.5
Prupe.1G185700 Prunus persica HOM05D003922 ORTHO05D004492 9.8e-56 220.3 147 72.1
Oeu050329.1 Olea europaea HOM05D003922 ORTHO05D004492 1.3e-55 219.9 150 71.3
vmacro00688 Vaccinium macrocarpon HOM05D003922 ORTHO05D004492 1.3e-55 219.9 150 71.3
CSS0038398 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 1.7e-55 219.5 150 70.0
Duzib268G1060 Durio zibethinus HOM05D003922 ORTHO05D004492 2.2e-55 219.2 150 70.0
Lj6A217G7 Lonicera japonica HOM05D003922 ORTHO05D004492 2.9e-55 218.8 150 70.7
RcHm_v2.0_Chr4g0405841 Rosa chinensis HOM05D003922 ORTHO05D004492 2.9e-55 218.8 150 72.0
CSS0002835 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 3.7e-55 218.4 150 70.0
Manes.05G137000 Manihot esculenta HOM05D003922 ORTHO05D004492 6.4e-55 217.6 150 70.0
Thecc.04G164400 Theobroma cacao HOM05D003922 ORTHO05D004492 6.4e-55 217.6 147 70.7
TAR633G0046 Trochodendron aralioides HOM05D003922 ORTHO05D004492 8.3e-55 217.2 149 71.1
CANSAT56G1338 Cannabis sativa HOM05D003922 ORTHO05D004492 1.1e-54 216.9 145 73.1
DCAR_005455 Daucus carota HOM05D003922 ORTHO05D004492 1.4e-54 216.5 150 70.7
Dinv18325 Davidia involucrata HOM05D003922 ORTHO05D004492 2.4e-54 215.7 150 70.7
Gohir.A09G213608 Gossypium hirsutum HOM05D003922 ORTHO05D004492 3.2e-54 215.3 147 69.4
Gohir.D09G212300 Gossypium hirsutum HOM05D003922 ORTHO05D004492 3.2e-54 215.3 147 69.4
Gorai.006G232100 Gossypium raimondii HOM05D003922 ORTHO05D004492 3.2e-54 215.3 147 69.4
Eucgr.H00289 Eucalyptus grandis HOM05D003922 ORTHO05D004492 4.1e-54 214.9 150 70.7
GSVIVG01035132001 Vitis vinifera HOM05D003922 ORTHO05D004492 5.4e-54 214.5 150 68.7
CSS0049854 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 7.0e-54 214.2 150 70.0
Cc03_g14390 Coffea canephora HOM05D003922 ORTHO05D004492 9.2e-54 213.8 150 68.7
Aa31LG5G5270 Aethionema arabicum HOM05D003922 ORTHO05D004492 1.2e-53 213.4 150 67.3
Ciclev10022699m.g Citrus clementina HOM05D003922 ORTHO05D004492 1.2e-53 213.4 150 71.3
Lalb_Chr18g0048821 Lupinus albus HOM05D003922 ORTHO05D004492 1.2e-53 213.4 148 68.9
Actinidia27120 Actinidia chinensis HOM05D003922 ORTHO05D004492 1.6e-53 213.0 150 70.0
TPR.G16707 Trifolium pratense HOM05D003922 ORTHO05D004492 1.6e-53 213.0 148 68.2
MD04G1037100 Malus domestica HOM05D003922 ORTHO05D004492 2.7e-53 212.2 148 70.9
AT2G31725 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 4.6e-53 211.5 150 66.7
Cpa.g.sc9.377 Carica papaya HOM05D003922 ORTHO05D004492 6.0e-53 211.1 150 67.3
TWI63G0384 Tripterygium wilfordii HOM05D003922 ORTHO05D004492 6.0e-53 211.1 150 68.7
C04p18050 Brassica napus HOM05D003922 ORTHO05D004492 7.8e-53 210.7 150 66.0
BolC4t23353H Brassica oleracea HOM05D003922 ORTHO05D004492 7.8e-53 210.7 150 66.0
BcaB02g10413 Brassica carinata HOM05D003922 ORTHO05D004492 1.0e-52 210.3 150 66.0
Ca_14117_v3 Cicer arietinum L. HOM05D003922 ORTHO05D004492 1.0e-52 210.3 148 67.6
Medtr3g009130 Medicago truncatula HOM05D003922 ORTHO05D004492 1.0e-52 210.3 148 65.5
AL4G26980 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.3e-52 209.9 150 66.0
Aqoxy2G04156 Aquilegia oxysepala HOM05D003922 ORTHO05D004492 1.7e-52 209.5 151 66.2
Thhalv10009017m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 1.7e-52 209.5 150 67.3
Thhalv10017374m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 1.7e-52 209.5 150 66.0
Glyma.06G319900 Glycine max HOM05D003922 ORTHO05D004492 1.7e-52 209.5 148 66.2
Sp4g14200 Schrenkiella parvula HOM05D003922 ORTHO05D004492 1.7e-52 209.5 150 66.0
arahy.Tifrunner.gnm1.ann1.D9AT9V Arachis hypogaea HOM05D003922 ORTHO05D004492 2.3e-52 209.1 148 66.2
MSTRG.24564 Avicennia marina HOM05D003922 ORTHO05D004492 2.3e-52 209.1 150 68.0
Migut.N03060 Erythranthe guttata HOM05D003922 ORTHO05D004492 3.0e-52 208.8 150 66.7
BcaC02g11282 Brassica carinata HOM05D003922 ORTHO05D004492 3.9e-52 208.4 150 65.3
MSTRG.22037 Avicennia marina HOM05D003922 ORTHO05D004492 5.0e-52 208.0 150 67.3
PGSC0003DMG400016054 Solanum tuberosum HOM05D003922 ORTHO05D004492 8.6e-52 207.2 150 66.7
THA.LOC104800922 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 8.6e-52 207.2 150 66.0
Glyma.02G058200 Glycine max HOM05D003922 ORTHO05D004492 1.1e-51 206.8 148 65.5
Solyc08g014300.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 1.1e-51 206.8 150 66.7
Sopen08g005210 Solanum pennellii HOM05D003922 ORTHO05D004492 1.1e-51 206.8 150 66.7
EL10Ac3g06102 Beta vulgaris HOM05D003922 ORTHO05D004492 1.9e-51 206.1 149 66.4
Nn2g13969 Nelumbo nucifera HOM05D003922 ORTHO05D004492 1.9e-51 206.1 147 68.0
Potri.013G127400 Populus trichocarpa HOM05D003922 ORTHO05D004492 2.5e-51 205.7 148 68.2
CARHR125410 Cardamine hirsuta HOM05D003922 ORTHO05D004492 4.3e-51 204.9 149 64.4
Atru.chr4.1453 Acer truncatum HOM05D003922 ORTHO05D004492 7.3e-51 204.1 150 68.0
BcaC07g42112 Brassica carinata HOM05D003922 ORTHO05D004492 7.3e-51 204.1 150 64.0
FvH4_3g34590 Fragaria vesca HOM05D003922 ORTHO05D004492 7.3e-51 204.1 143 70.6
FAN11G1624 Fragaria x ananassa HOM05D003922 ORTHO05D004492 7.3e-51 204.1 143 70.6
FAN25G1394 Fragaria x ananassa HOM05D003922 ORTHO05D004492 7.3e-51 204.1 143 70.6
Psat5g230680 Pisum sativum HOM05D003922 ORTHO05D004492 7.3e-51 204.1 148 64.9
FAN02G1921 Fragaria x ananassa HOM05D003922 ORTHO05D004492 9.5e-51 203.8 145 69.7
FAN06G3125 Fragaria x ananassa HOM05D003922 ORTHO05D004492 9.5e-51 203.8 145 69.7
PSO017G0931 Papaver somniferum HOM05D003922 ORTHO05D004492 1.2e-50 203.4 147 65.3
A09p67310 Brassica napus HOM05D003922 ORTHO05D004492 1.6e-50 203.0 150 64.0
FAN21G3935 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.6e-50 203.0 143 69.9
FAN16G1833 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.1e-50 202.6 143 69.9
Lj3g0023756 Lotus japonicus HOM05D003922 ORTHO05D004492 2.1e-50 202.6 148 64.2
AT1G05730 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 2.8e-50 202.2 150 64.7
THA.LOC104815872 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 2.8e-50 202.2 147 65.3
unitig_578.g16270 Utricularia gibba HOM05D003922 ORTHO05D004492 2.8e-50 202.2 143 67.1
HanXRQChr11g0343091 Helianthus annuus HOM05D003922 ORTHO05D004492 3.6e-50 201.8 147 66.7
PSO573G0028 Papaver somniferum HOM05D003922 ORTHO05D004492 3.6e-50 201.8 147 64.6
Phvul.005G007000 Phaseolus vulgaris HOM05D003922 ORTHO05D004492 3.6e-50 201.8 148 65.5
BraA05t20315Z Brassica rapa HOM05D003922 ORTHO05D004492 4.7e-50 201.4 162 61.1
ECA248G0756 Erigeron canadensis HOM05D003922 ORTHO05D004492 4.7e-50 201.4 148 66.9
Glyma.04G117900 Glycine max HOM05D003922 ORTHO05D004492 8.0e-50 200.7 148 64.2
SGA_v2.0_scaffold25G11004 Striga asiatica HOM05D003922 ORTHO05D004492 1.1e-49 200.3 150 63.3
AL1G15640 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.4e-49 199.9 150 64.0
Sp1g04550 Schrenkiella parvula HOM05D003922 ORTHO05D004492 1.4e-49 199.9 150 63.3
SalBow6G3114 Salvia bowleyana HOM05D003922 ORTHO05D004492 2.3e-49 199.1 144 65.3
Lsat_1_v5_gn_1_74581 Lactuca sativa HOM05D003922 ORTHO05D004492 3.1e-49 198.7 148 63.5
CARHR005250 Cardamine hirsuta HOM05D003922 ORTHO05D004492 4.0e-49 198.4 149 63.1
Sabra13G0106500 Salix brachista HOM05D003922 ORTHO05D004492 4.0e-49 198.4 148 65.5
Carub.0004s1303 Capsella rubella HOM05D003922 ORTHO05D004492 5.2e-49 198.0 145 64.8
CAN.G759.3 Capsicum annuum HOM05D003922 ORTHO05D004492 6.8e-49 197.6 150 64.0
COL.COLO4_38113 Corchorus olitorius HOM05D003922 ORTHO05D004492 6.8e-49 197.6 134 68.7
Sopen06g018570 Solanum pennellii HOM05D003922 ORTHO05D004492 6.8e-49 197.6 150 66.0
Peaxi162Scf00075g01329 Petunia axillaris HOM05D003922 ORTHO05D004492 1.2e-48 196.8 150 66.7
SGA_v2.0_scaffold19G08849 Striga asiatica HOM05D003922 ORTHO05D004492 1.5e-48 196.4 161 59.6
BraA09t42062Z Brassica rapa HOM05D003922 ORTHO05D004492 2.0e-48 196.1 157 61.1
Hund03208 Selenicereus undatus HOM05D003922 ORTHO05D004492 2.6e-48 195.7 147 63.9
PGSC0003DMG400016330 Solanum tuberosum HOM05D003922 ORTHO05D004492 3.4e-48 195.3 144 68.1
CAN.G1401.2 Capsicum annuum HOM05D003922 ORTHO05D004492 2.2e-47 192.6 147 62.6
BolC8t52690H Brassica oleracea HOM05D003922 ORTHO05D004492 3.7e-47 191.8 160 58.8
C08p51620 Brassica napus HOM05D003922 ORTHO05D004492 4.9e-47 191.4 161 58.4
Sc19g0002260 Simmondsia chinensis HOM05D003922 ORTHO05D004492 4.9e-47 191.4 150 62.0
Duzib151G1155 Durio zibethinus HOM05D003922 ORTHO05D004492 1.1e-46 190.3 181 54.7
Oeu015712.2 Olea europaea HOM05D003922 ORTHO05D004492 1.9e-46 189.5 222 48.2
Os11g0256200 Oryza sativa ssp. japonica HOM05D003922 ORTHO05D004492 3.2e-46 188.7 144 61.1
CDE09G1276 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 5.4e-46 188.0 147 63.9
VMungo1080G1004 Vigna mungo HOM05D003922 ORTHO05D004492 1.6e-45 186.4 148 60.1
Carub.0001s0508 Capsella rubella HOM05D003922 ORTHO05D004492 2.7e-45 185.7 150 60.7
AUR62002412 Chenopodium quinoa HOM05D003922 ORTHO05D004492 1.3e-44 183.3 144 62.5
Nitab4.5_0004700g0050 Nicotiana tabacum HOM05D003922 ORTHO05D004492 1.7e-44 183.0 170 59.4
ATR0743G180 Amborella trichopoda HOM05D003922 ORTHO05D004492 3.9e-44 181.8 135 64.4
DCAR_027517 Daucus carota HOM05D003922 ORTHO05D004492 5.0e-44 181.4 149 58.4
THA.LOC104804105 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 6.6e-44 181.0 152 57.2
Haze_00850 Corylus avellana HOM05D003922 ORTHO05D004492 1.9e-43 179.5 99 90.9
Lj6A207G21 Lonicera japonica HOM05D003922 ORTHO05D004492 1.9e-43 179.5 193 51.8
AL4G42550 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 9.5e-43 177.2 144 57.6
AT2G43720 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 8.1e-42 174.1 144 55.6
Peaxi162Scf00579g00013 Petunia axillaris HOM05D003922 ORTHO05D004492 1.1e-41 173.7 148 62.8
Haze_00864 Corylus avellana HOM05D003922 ORTHO05D004492 1.4e-41 173.3 89 96.6
Sp4g25790 Schrenkiella parvula HOM05D003922 ORTHO05D004492 2.3e-41 172.6 144 56.2
BcaC02g07156 Brassica carinata HOM05D000941 ORTHO05D004492 4.0e-41 171.8 150 54.0
BolC4t28571H Brassica oleracea HOM05D003922 ORTHO05D004492 4.0e-41 171.8 150 54.0
Zm00001eb169120 Zea mays HOM05D003922 ORTHO05D004492 5.2e-41 171.4 140 55.7
CARHR138910 Cardamine hirsuta HOM05D003922 ORTHO05D004492 6.8e-41 171.0 144 54.9
arahy.Tifrunner.gnm1.ann1.1Q5EFH Arachis hypogaea HOM05D003922 ORTHO05D004492 2.6e-40 169.1 148 56.8
A04p33020 Brassica napus HOM05D003922 ORTHO05D004492 1.3e-39 166.8 143 54.5
C04p70710 Brassica napus HOM05D003922 ORTHO05D004492 1.3e-39 166.8 143 54.5
BraA04t18761Z Brassica rapa HOM05D003922 ORTHO05D004492 1.3e-39 166.8 143 54.5
HPP92_023724 Vanilla planifolia HOM05D003922 ORTHO05D004492 1.3e-39 166.8 148 54.1
BcaB06g29344 Brassica carinata HOM05D003922 ORTHO05D004492 1.7e-39 166.4 143 55.2
Zm00001eb169100 Zea mays HOM05D003922 ORTHO05D004492 4.9e-39 164.9 140 52.9
Carub.0004s2626 Capsella rubella HOM05D003922 ORTHO05D004492 4.1e-38 161.8 144 51.4
Thhalv10001669m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 1.6e-37 159.8 143 51.7
MBI07_g11491_MAGBIO Magnolia biondii HOM05D003922 ORTHO05D004492 2.1e-37 159.5 142 59.2
arahy.Tifrunner.gnm1.ann1.H4TYTD Arachis hypogaea HOM05D003922 ORTHO05D004492 7.8e-37 157.5 148 54.7
BcaC07g42114 Brassica carinata HOM05D003922 ORTHO05D004492 4.0e-33 145.2 151 51.0
CDE04G0234 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 8.9e-33 144.1 89 75.3
Lj3P164T1 Lonicera japonica HOM05D003922 ORTHO05D004492 1.2e-32 143.7 108 62.0
Lju359P1T4 Lonicera japonica HOM05D003922 ORTHO05D004492 1.2e-32 143.7 108 62.0
BcaC07g42117 Brassica carinata HOM05D003922 ORTHO05D004492 2.0e-32 142.9 151 50.3
A05p13780 Brassica napus HOM05D003922 ORTHO05D004492 2.0e-32 142.9 107 62.6
Glyma.06G288100 Glycine max HOM05D003922 ORTHO05D004492 2.6e-32 142.5 133 52.6
Glyma.06G288300 Glycine max HOM05D003922 ORTHO05D004492 2.6e-32 142.5 133 52.6
Glyma.06G320000 Glycine max HOM05D003922 ORTHO05D004492 1.3e-31 140.2 144 48.6
Nitab4.5_0007474g0040 Nicotiana tabacum HOM05D003922 ORTHO05D004492 1.6e-29 133.3 133 54.1
arahy.Tifrunner.gnm1.ann1.GG9VXM Arachis hypogaea HOM05D003922 ORTHO05D004492 2.1e-29 132.9 148 49.3
Aa31LG1G25440 Aethionema arabicum HOM05D003922 ORTHO05D004492 3.5e-29 132.1 100 62.0
Glyma.06G288000 Glycine max HOM05D003922 ORTHO05D004492 2.3e-28 129.4 143 46.2
Solyc06g053490.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 1.1e-27 127.1 89 67.4
Nitab4.5_0000013g0490 Nicotiana tabacum HOM05D003922 ORTHO05D004492 1.5e-27 126.7 89 68.5
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 9.9e-24 114.0 82 62.2
Pp3c22_16840 Physcomitrium patens HOM05D003922 ORTHO05D004492 4.9e-23 111.7 138 39.1
SEGI_40113 Sequoiadendron giganteum HOM05D003922 ORTHO05D004492 4.2e-22 108.6 86 57.0
AT1G05740 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 3.5e-21 105.5 103 50.5
Carub.0001s0509 Capsella rubella HOM05D003922 ORTHO05D004492 3.9e-20 102.1 91 50.5
Glyma.06G288200 Glycine max HOM05D003922 ORTHO05D004492 3.3e-19 99.0 143 39.9
AagrBONN_evm.TU.Sc2ySwM_228.3693 Anthoceros agrestis HOM05D003922 ORTHO05D004492 9.6e-19 97.4 137 32.1
SMO174G0123 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 9.0e-17 90.9 141 30.5
arahy.Tifrunner.gnm1.ann1.V6LTI0 Arachis hypogaea HOM05D003922 ORTHO05D004492 1.3e-15 87.0 73 58.9
SMO174G0129 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 3.2e-14 82.4 152 28.9
CiPaw.16G066500 Carya illinoinensis HOM05D003922 ORTHO05D004492 4.2e-14 82.0 56 67.9
BcaB05g24674 Brassica carinata HOM05D001689 ORTHO05D004492 6.0e-13 78.2 52 69.2
Lsat_1_v5_gn_3_36701 Lactuca sativa HOM05D003922 ORTHO05D004492 5.1e-12 75.1 102 39.2
SMO116G0121 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 1.9e-11 73.2 104 28.8
arahy.Tifrunner.gnm1.ann1.DMY77W Arachis hypogaea HOM05D003922 ORTHO05D004492 2.5e-11 72.8 87 43.7
BcaB05g25136 Brassica carinata HOM05D003922 ORTHO05D004492 6.2e-10 68.2 44 68.2
CBR_g3774 Chara braunii HOM05D003922 ORTHO05D004492 5.3e-09 65.1 113 27.4
Cre12.g551900 Chlamydomonas reinhardtii HOM05D003922 ORTHO05D004492 1.7e-07 60.1 131 26.0


User provided reference genes

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